; position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return chi,sig,rank,distrib,index -max_graphs 100 -2str -noov -seqtype dna -l 7 -ci 50 -lth_occ 1 -lth_sig 0 -uth_rank 100 -img_format png -title znf492_2 -origin center -offset 0 -max_graphs 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab
; Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
; Sequence file                	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
; Sequence format              	fasta
; Sequence type                	dna
; Output file                  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab
; Oligo length                 	7
; Occurrences counted  on both strands
; Grouping reverse complements
; Lower threshold on occurrences	1
; Conditions of applicability checked.
; Background model estimation: homogeneous repartition
; Sequence statistics:
;	Nb of sequences              	705
;	Sum of sequence lengths      	157204
;	Min sequence length          	0
;	Max sequence length          	607
;	Average sequence length      	222
;	Possible positions           	305948
; Oligonucleotide statistics:
;	Total occurrences    	37712
;	Total overlaps       	290
; Position interval parameters:
;	Position interval    	50
;	Number of windows    	13
;	Total positions      	152974
;	Degrees of freedom   	12
; K-mer clustering parameters:
;	Number of clusters   	0
;	Clustering method    	complete
; Position intervals:
;	window	[min,max]	mid	seq	occ
;	1	-7	[-349,-300]	-324.5	1	4
;	2	-6	[-299,-250]	-274.5	2	70
;	3	-5	[-249,-200]	-224.5	18	524
;	4	-4	[-199,-150]	-174.5	80	1795
;	5	-3	[-149,-100]	-124.5	398	12146
;	6	-2	[-99,-50]	-74.5	698	29216
;	7	-1	[-49,0]	-24.5	705	35234
;	8	0	[1,50]	25.5	705	35181
;	9	1	[51,100]	75.5	694	26967
;	10	2	[101,150]	125.5	358	9946
;	11	3	[151,200]	175.5	59	1422
;	12	4	[201,250]	225.5	17	410
;	13	5	[251,300]	275.5	2	59
;
; Column headers
;	1	seq            	pattern sequence
;	2	id             	pattern identifier
;	3	occ            	pattern occurrences
;	4	over           	overlapping occurrences (discarded)
;	5	chi2           	observed chi-square
;	6	df             	degrees of freedom
;	7	Pval           	P-value (probability for one word to be a false positive)
;	8	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
;	9	sig            	Significance (sig = -log10(Eval))
;	10	rank           	rank of the pattern according to sorting criterion
;	11	-324.5         	occurrences in window	1	[-349,-300]
;	12	-274.5         	occurrences in window	2	[-299,-250]
;	13	-224.5         	occurrences in window	3	[-249,-200]
;	14	-174.5         	occurrences in window	4	[-199,-150]
;	15	-124.5         	occurrences in window	5	[-149,-100]
;	16	-74.5          	occurrences in window	6	[-99,-50]
;	17	-24.5          	occurrences in window	7	[-49,0]
;	18	25.5           	occurrences in window	8	[1,50]
;	19	75.5           	occurrences in window	9	[51,100]
;	20	125.5          	occurrences in window	10	[101,150]
;	21	175.5          	occurrences in window	11	[151,200]
;	22	225.5          	occurrences in window	12	[201,250]
;	23	275.5          	occurrences in window	13	[251,300]
#seq	id	occ	over	chi2	df	Pval	Eval	sig	rank	-324.5	-274.5	-224.5	-174.5	-124.5	-74.5	-24.5	25.5	75.5	125.5	175.5	225.5	275.5
aaaaagg	aaaaagg|ccttttt	56	0	58.8	12	3.8e-08	0.00026	3.59	1	0	0	0	0	3	7	50	43	7	2	2	0	0
aacaaaa	aacaaaa|ttttgtt	38	2	47.1	12	4.4e-06	0.03	1.53	2	0	0	0	0	0	8	42	26	5	3	0	0	0
; Host name	rsat
; Job started	2025-05-26.211250
; Job done	2025-05-26.211254
; Seconds	4.04
;	user	4.04
;	system	0.12
;	cuser	0
;	csystem	0
