; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm.asmb
; Input score column           	9
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	4
;

; assembly # 1	seed: aaaagg	2 assembled patterns	length 7
;alignt	rev_cpl	score
aaaaag.	.cttttt	3.23
.aaaagg	cctttt.	5.85
aaaaagg	ccttttt	5.85	best consensus

; assembly # 2	seed: aacaaa	2 assembled patterns	length 7
;alignt	rev_cpl	score
caacaa.	.ttgttg	0.22
.aacaaa	tttgtt.	1.23
caacaaa	tttgttg	1.23	best consensus
; Host name	rsat
; Job started	2025-05-26.211248
; Job done	2025-05-26.211248
; Seconds	0.11
;	user	0.11
;	system	0.01
;	cuser	0
;	csystem	0
