; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29719
;		c	0.20408
;		g	0.20498
;		t	0.29375
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
chr1:10051874-10052049	site	oligos_6nt_mkv3_m5	R	56	66	GCCTCAGCCTC	10.3
chr1:10051874-10052049	site	oligos_6nt_mkv3_m5	R	56	66	GCCTCAGCCTC	10.3
chr1:204485343-204485495	site	oligos_6nt_mkv3_m5	D	3	13	AGCTCAGCCTT	8.1
chr1:204485343-204485495	site	oligos_6nt_mkv3_m5	D	3	13	AGCTCAGCCTT	8.1
chr1:204485343-204485495	site	oligos_6nt_mkv3_m5	D	3	13	AGCTCAGCCTT	8.1
chr1:204485343-204485495	site	oligos_6nt_mkv3_m5	D	3	13	AGCTCAGCCTT	8.1
chr1:204485343-204485495	site	oligos_6nt_mkv3_m5	D	3	13	AGCTCAGCCTT	8.1
chr1:204485343-204485495	site	oligos_6nt_mkv3_m5	D	3	13	AGCTCAGCCTT	8.1
chr1:204485343-204485495	site	oligos_6nt_mkv3_m5	D	3	13	AGCTCAGCCTT	8.1
chr1:231475714-231475907	site	oligos_6nt_mkv3_m5	R	58	68	GCCTCGGCCTC	9.3
chr1:231475714-231475907	site	oligos_6nt_mkv3_m5	R	58	68	GCCTCGGCCTC	9.3
chr1:231475714-231475907	site	oligos_6nt_mkv3_m5	R	58	68	GCCTCGGCCTC	9.3
chr10:7502949-7503206	site	oligos_6nt_mkv3_m5	R	59	69	CACTCAGCCGG	8.9
chr10:7502949-7503206	site	oligos_6nt_mkv3_m5	R	103	113	GTCTCGGCCTC	9.6
chr10:7502949-7503206	site	oligos_6nt_mkv3_m5	R	59	69	CACTCAGCCGG	8.9
chr10:7502949-7503206	site	oligos_6nt_mkv3_m5	R	103	113	GTCTCGGCCTC	9.6
chr10:7502949-7503206	site	oligos_6nt_mkv3_m5	R	59	69	CACTCAGCCGG	8.9
chr10:7502949-7503206	site	oligos_6nt_mkv3_m5	R	103	113	GTCTCGGCCTC	9.6
chr10:7502949-7503206	site	oligos_6nt_mkv3_m5	R	59	69	CACTCAGCCGG	8.9
chr10:7502949-7503206	site	oligos_6nt_mkv3_m5	R	103	113	GTCTCGGCCTC	9.6
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr14:51473859-51474029	site	oligos_6nt_mkv3_m5	R	59	69	GGATCAGCCTC	8.4
chr15:72918213-72918704	site	oligos_6nt_mkv3_m5	R	-120	-110	GCCTCAGCCTC	10.3
chr15:72918213-72918704	site	oligos_6nt_mkv3_m5	R	-88	-78	GCCTCCGCCTC	9.5
chr15:72918213-72918704	site	oligos_6nt_mkv3_m5	R	-120	-110	GCCTCAGCCTC	10.3
chr15:72918213-72918704	site	oligos_6nt_mkv3_m5	R	-88	-78	GCCTCCGCCTC	9.5
chr16:23158280-23158475	site	oligos_6nt_mkv3_m5	R	-31	-21	GTCTCAGCTTG	7.5
chr16:23158280-23158475	site	oligos_6nt_mkv3_m5	R	-31	-21	GTCTCAGCTTG	7.5
chr16:23158280-23158475	site	oligos_6nt_mkv3_m5	R	-31	-21	GTCTCAGCTTG	7.5
chr16:89912027-89912429	site	oligos_6nt_mkv3_m5	D	156	166	AGCTCCGCCTC	8.3
chr16:89912027-89912429	site	oligos_6nt_mkv3_m5	D	188	198	GCCTCAGCCTC	10.3
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-38	-28	GCCTCCGCCTG	8.6
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-22	-12	GACTCAGCCTC	10.2
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-38	-28	GCCTCCGCCTG	8.6
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-22	-12	GACTCAGCCTC	10.2
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-38	-28	GCCTCCGCCTG	8.6
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-22	-12	GACTCAGCCTC	10.2
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-38	-28	GCCTCCGCCTG	8.6
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-22	-12	GACTCAGCCTC	10.2
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-38	-28	GCCTCCGCCTG	8.6
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-22	-12	GACTCAGCCTC	10.2
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-38	-28	GCCTCCGCCTG	8.6
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-22	-12	GACTCAGCCTC	10.2
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-38	-28	GCCTCCGCCTG	8.6
chr17:78420555-78420740	site	oligos_6nt_mkv3_m5	D	-22	-12	GACTCAGCCTC	10.2
chr18:24090040-24090139	site	oligos_6nt_mkv3_m5	R	-2	8	CGCTCAGCGAC	9.2
chr18:24090040-24090139	site	oligos_6nt_mkv3_m5	R	-2	8	CGCTCAGCGAC	9.2
chr18:24090040-24090139	site	oligos_6nt_mkv3_m5	R	-2	8	CGCTCAGCGAC	9.2
chr18:24090040-24090139	site	oligos_6nt_mkv3_m5	R	-2	8	CGCTCAGCGAC	9.2
chr18:24090040-24090139	site	oligos_6nt_mkv3_m5	R	-2	8	CGCTCAGCGAC	9.2
chr18:24090040-24090139	site	oligos_6nt_mkv3_m5	R	-2	8	CGCTCAGCGAC	9.2
chr2:55298151-55298265	site	oligos_6nt_mkv3_m5	D	-50	-40	ACCTCGGCCTC	8.4
chr20:1246086-1246387	site	oligos_6nt_mkv3_m5	R	-148	-138	CTCTCCGCCAC	8.5
chr20:1246086-1246387	site	oligos_6nt_mkv3_m5	R	-148	-138	CTCTCCGCCAC	8.5
chr20:3488638-3488812	site	oligos_6nt_mkv3_m5	R	-14	-4	CGCCCAGCCTT	7.7
chr20:3488638-3488812	site	oligos_6nt_mkv3_m5	R	30	40	GCCTCAGCCTC	10.3
chr20:3488638-3488812	site	oligos_6nt_mkv3_m5	R	-14	-4	CGCCCAGCCTT	7.7
chr20:3488638-3488812	site	oligos_6nt_mkv3_m5	R	30	40	GCCTCAGCCTC	10.3
chr20:3488638-3488812	site	oligos_6nt_mkv3_m5	R	-14	-4	CGCCCAGCCTT	7.7
chr20:3488638-3488812	site	oligos_6nt_mkv3_m5	R	30	40	GCCTCAGCCTC	10.3
chr20:3488638-3488812	site	oligos_6nt_mkv3_m5	R	-14	-4	CGCCCAGCCTT	7.7
chr20:3488638-3488812	site	oligos_6nt_mkv3_m5	R	30	40	GCCTCAGCCTC	10.3
chr20:60841926-60842084	site	oligos_6nt_mkv3_m5	R	60	70	GCCTCAGCCTC	10.3
chr20:60841926-60842084	site	oligos_6nt_mkv3_m5	R	60	70	GCCTCAGCCTC	10.3
chr20:60841926-60842084	site	oligos_6nt_mkv3_m5	R	60	70	GCCTCAGCCTC	10.3
chr20:60841926-60842084	site	oligos_6nt_mkv3_m5	R	60	70	GCCTCAGCCTC	10.3
chr7:43595326-43595648	site	oligos_6nt_mkv3_m5	R	120	130	AGCTCAGCCCC	7.8
chr7:43595326-43595648	site	oligos_6nt_mkv3_m5	R	120	130	AGCTCAGCCCC	7.8
chr7:140706116-140706324	site	oligos_6nt_mkv3_m5	D	-36	-26	CTCTCCGCCAC	8.5
chr7:140706116-140706324	site	oligos_6nt_mkv3_m5	D	-36	-26	CTCTCCGCCAC	8.5
chr7:154649546-154649755	site	oligos_6nt_mkv3_m5	D	29	39	CACTCAGCCAG	8.0
chr7:154649546-154649755	site	oligos_6nt_mkv3_m5	D	29	39	CACTCAGCCAG	8.0
chr7:154649546-154649755	site	oligos_6nt_mkv3_m5	D	29	39	CACTCAGCCAG	8.0
chr7:154649546-154649755	site	oligos_6nt_mkv3_m5	D	29	39	CACTCAGCCAG	8.0
chr7:154649546-154649755	site	oligos_6nt_mkv3_m5	D	29	39	CACTCAGCCAG	8.0
chr7:154649546-154649755	site	oligos_6nt_mkv3_m5	D	29	39	CACTCAGCCAG	8.0
chr7:154649546-154649755	site	oligos_6nt_mkv3_m5	D	29	39	CACTCAGCCAG	8.0
chr7:154649546-154649755	site	oligos_6nt_mkv3_m5	D	29	39	CACTCAGCCAG	8.0
chr7:154649546-154649755	site	oligos_6nt_mkv3_m5	D	29	39	CACTCAGCCAG	8.0
chr7:154649546-154649755	site	oligos_6nt_mkv3_m5	D	29	39	CACTCAGCCAG	8.0
chr7:157139736-157140063	site	oligos_6nt_mkv3_m5	D	-104	-94	GCCTCGGCCTC	9.3
chr7:157139736-157140063	site	oligos_6nt_mkv3_m5	D	-104	-94	GCCTCGGCCTC	9.3
chr7:157139736-157140063	site	oligos_6nt_mkv3_m5	D	-104	-94	GCCTCGGCCTC	9.3
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	-10	0	GCCTCGGCCTC	9.3
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	34	44	CGCCCAGCCTT	7.7
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	-10	0	GCCTCGGCCTC	9.3
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	34	44	CGCCCAGCCTT	7.7
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	-10	0	GCCTCGGCCTC	9.3
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	34	44	CGCCCAGCCTT	7.7
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	-10	0	GCCTCGGCCTC	9.3
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	34	44	CGCCCAGCCTT	7.7
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	-10	0	GCCTCGGCCTC	9.3
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	34	44	CGCCCAGCCTT	7.7
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	-10	0	GCCTCGGCCTC	9.3
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	34	44	CGCCCAGCCTT	7.7
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	-10	0	GCCTCGGCCTC	9.3
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	34	44	CGCCCAGCCTT	7.7
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	-10	0	GCCTCGGCCTC	9.3
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	34	44	CGCCCAGCCTT	7.7
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	-10	0	GCCTCGGCCTC	9.3
chr8:38093716-38093856	site	oligos_6nt_mkv3_m5	D	34	44	CGCCCAGCCTT	7.7
chr9:36555999-36556322	site	oligos_6nt_mkv3_m5	D	138	148	GCCTCAGCCTC	10.3
chr9:36555999-36556322	site	oligos_6nt_mkv3_m5	D	138	148	GCCTCAGCCTC	10.3
chr9:36555999-36556322	site	oligos_6nt_mkv3_m5	D	138	148	GCCTCAGCCTC	10.3
chr9:36555999-36556322	site	oligos_6nt_mkv3_m5	D	138	148	GCCTCAGCCTC	10.3
chr9:36555999-36556322	site	oligos_6nt_mkv3_m5	D	138	148	GCCTCAGCCTC	10.3
chr9:36555999-36556322	site	oligos_6nt_mkv3_m5	D	138	148	GCCTCAGCCTC	10.3
chr9:36555999-36556322	site	oligos_6nt_mkv3_m5	D	138	148	GCCTCAGCCTC	10.3
chr9:36555999-36556322	site	oligos_6nt_mkv3_m5	D	138	148	GCCTCAGCCTC	10.3
chr9:36555999-36556322	site	oligos_6nt_mkv3_m5	D	138	148	GCCTCAGCCTC	10.3
chr9:36555999-36556322	site	oligos_6nt_mkv3_m5	D	138	148	GCCTCAGCCTC	10.3
chr9:79610636-79610957	site	oligos_6nt_mkv3_m5	D	-122	-112	CGCCCAGCCTT	7.7
chrX:68727184-68727335	site	oligos_6nt_mkv3_m5	D	10	20	CCCTCAGCCTC	9.8
chrX:101695896-101696241	site	oligos_6nt_mkv3_m5	D	-154	-144	CCCTCAGCCCA	7.7
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv3_m5	11	4	0	-24.600	11.600	36.200	a:0.297 c:0.204 g:0.205 t:0.294 
; Number of sequences scanned	705
; Sum of sequence lengths	157204
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv3_m5	148	0
;		TOTAL          	148	0
; Host name	rsat
; Job started	2025-05-26.211317
; Job done	2025-05-26.211318
; Seconds	0.17
;	user	0.17
;	system	0.02
;	cuser	0.11
;	csystem	0.01
