AC  assembly_1
XX
ID  aaaaaggca
XX
DE  nnAAAAAGGCAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         5.15      0.00      0.00      0.00
4         5.15      0.00      0.00      0.00
5         5.15      0.00      0.00      0.00
6         5.15      0.00      0.00      0.00
7         5.15      0.00      0.00      0.00
8         0.00      0.00      5.15      0.00
9         0.00      0.00      5.15      0.00
10        0.00      3.16      0.00      0.00
11        3.16      0.00      0.00      0.00
12        0.00      0.00      0.00      0.00
13        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 1
CC  id: assembly_1
CC  name: aaaaaggca
CC  asmb.seed: aaaaagg
CC  matrix.nb: 1
CC  sites: 3
CC  consensus.strict: --AAAAAGGCA--
CC  consensus.strict.rc: --TGCCTTTTT--
CC  consensus.IUPAC: nnAAAAAGGCAnn
CC  consensus.IUPAC.rc: NNTGCCTTTTTNN
CC  consensus.regexp: [acgt][acgt]AAAAAGGCA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TGCCTTTTT[ACGT][ACGT]
XX
//
AC  assembly_2
XX
ID  agcaacaaaa
XX
DE  nnaGCAACAAAAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.53      0.00      0.00      0.00
4         0.00      0.00      1.90      0.00
5         0.00      2.63      0.00      0.00
6         2.63      0.00      0.00      0.00
7         2.63      0.00      0.00      0.00
8         0.00      2.63      0.00      0.00
9         2.63      0.00      0.00      0.00
10        2.63      0.00      0.00      0.00
11        2.63      0.00      0.00      0.00
12        2.41      0.00      0.00      0.00
13        0.00      0.00      0.00      0.00
14        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 2
CC  id: assembly_2
CC  name: agcaacaaaa
CC  asmb.seed: caacaaa
CC  matrix.nb: 2
CC  sites: 4
CC  consensus.strict: --aGCAACAAAA--
CC  consensus.strict.rc: --TTTTGTTGCT--
CC  consensus.IUPAC: nnaGCAACAAAAnn
CC  consensus.IUPAC.rc: NNTTTTGTTGCTNN
CC  consensus.regexp: [acgt][acgt]aGCAACAAAA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTTTGTTGCT[ACGT][ACGT]
XX
//
AC  assembly_3
XX
ID  actaaaa
XX
DE  nnACTAAAAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         2.38      0.00      0.00      0.00
4         0.00      2.38      0.00      0.00
5         0.00      0.00      0.00      2.38
6         2.38      0.00      0.00      0.00
7         2.38      0.00      0.00      0.00
8         2.38      0.00      0.00      0.00
9         2.38      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 3
CC  id: assembly_3
CC  name: actaaaa
CC  asmb.seed: actaaaa
CC  matrix.nb: 3
CC  sites: 1
CC  consensus.strict: --ACTAAAA--
CC  consensus.strict.rc: --TTTTAGT--
CC  consensus.IUPAC: nnACTAAAAnn
CC  consensus.IUPAC.rc: NNTTTTAGTNN
CC  consensus.regexp: [acgt][acgt]ACTAAAA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTTTAGT[ACGT][ACGT]
XX
//
AC  assembly_4
XX
ID  tagataa
XX
DE  nntagataann
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      0.00      0.00      0.02
4         0.02      0.00      0.00      0.00
5         0.00      0.00      0.02      0.00
6         0.02      0.00      0.00      0.00
7         0.00      0.00      0.00      0.02
8         0.02      0.00      0.00      0.00
9         0.02      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 4
CC  id: assembly_4
CC  name: tagataa
CC  asmb.seed: tagataa
CC  matrix.nb: 4
CC  sites: 1
CC  consensus.strict: --tagataa--
CC  consensus.strict.rc: --TTATCTA--
CC  consensus.IUPAC: nntagataann
CC  consensus.IUPAC.rc: NNTTATCTANN
CC  consensus.regexp: [acgt][acgt]tagataa[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTATCTA[ACGT][ACGT]
XX
//
