; compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
; Program version       	1.118
; Quick mode 
; Input files
;	file1 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_discovered.tf
;	file2 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_discovered.tf
; Output files
;	match_table_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
;	html_index   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
;	alignments_1ton_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
;	prefix       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa
;	alignments_1ton	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
;	match_table_txt	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
; Matrices
;	file1	13 matrices	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_discovered.tf
;		file1	1	12	572
;		file1	2	15	525
;		file1	3	11	550
;		file1	4	16	536
;		file1	5	11	402
;		file1	6	11	525
;		file1	7	11	425
;		file1	8	13	532
;		file1	9	14	531
;		file1	10	11	228
;		file1	11	11	351
;		...	3 more matrices
;	file2	13 matrices	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_discovered.tf
;		file2		1		12		572
;		file2		2		15		525
;		file2		3		11		550
;		file2		4		16		536
;		file2		5		11		402
;		file2		6		11		525
;		file2		7		11		425
;		file2		8		13		532
;		file2		9		14		531
;		file2		10		11		228
;		file2		11		11		351
;		...	3 more matrices
; Column content
;	1	id1          	Identifier of the first matrix
;	2	id2          	Identifier of the second matrix
;	3	name1        	Name of the first matrix
;	4	name2        	Name of the second matrix
;	5	cor          	Pearson coefficient of correlation between frequency matrices
;	6	Ncor         	Normalized correlation. Ncor = cor * Wr
;	7	w1           	Width of the first matrix
;	8	w2           	Width of the second matrix
;	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
;	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
;	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
;	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
;	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
;	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
;	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
#id1	id2	name1	name2	cor	Ncor	w1	w2	w	W	Wr	wr1	wr2	strand	offset
oligos_6nt_mkv3_m3	oligos_6nt_mkv3_m3	oligos_6nt_mkv3_m3	oligos_6nt_mkv3_m3	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv4_m3	oligos_7nt_mkv4_m3	oligos_7nt_mkv4_m3	oligos_7nt_mkv4_m3	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv3_m4	oligos_6nt_mkv3_m4	oligos_6nt_mkv3_m4	oligos_6nt_mkv3_m4	1.000	1.000	16	16	16	16	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv4_m1	oligos_7nt_mkv4_m1	oligos_7nt_mkv4_m1	oligos_7nt_mkv4_m1	1.000	1.000	13	13	13	13	1.0000	1.0000	1.0000	D	0
positions_7nt_m1	positions_7nt_m1	positions_7nt_m1	positions_7nt_m1	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv4_m4	oligos_7nt_mkv4_m4	oligos_7nt_mkv4_m4	oligos_7nt_mkv4_m4	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv3_m2	oligos_6nt_mkv3_m2	oligos_6nt_mkv3_m2	oligos_6nt_mkv3_m2	1.000	1.000	15	15	15	15	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv3_m5	oligos_6nt_mkv3_m5	oligos_6nt_mkv3_m5	oligos_6nt_mkv3_m5	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
positions_6nt_m1	positions_6nt_m1	positions_6nt_m1	positions_6nt_m1	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
positions_7nt_m2	positions_7nt_m2	positions_7nt_m2	positions_7nt_m2	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv4_m2	oligos_7nt_mkv4_m2	oligos_7nt_mkv4_m2	oligos_7nt_mkv4_m2	1.000	1.000	14	14	14	14	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv3_m1	oligos_6nt_mkv3_m1	oligos_6nt_mkv3_m1	oligos_6nt_mkv3_m1	1.000	1.000	12	12	12	12	1.0000	1.0000	1.0000	D	0
positions_6nt_m2	positions_6nt_m2	positions_6nt_m2	positions_6nt_m2	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
positions_6nt_m1	positions_7nt_m1	positions_6nt_m1	positions_7nt_m1	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
positions_7nt_m1	positions_6nt_m1	positions_7nt_m1	positions_6nt_m1	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv3_m2	oligos_7nt_mkv4_m2	oligos_6nt_mkv3_m2	oligos_7nt_mkv4_m2	0.993	0.927	15	14	14	15	0.9333	0.9333	1.0000	D	1
oligos_7nt_mkv4_m2	oligos_6nt_mkv3_m2	oligos_7nt_mkv4_m2	oligos_6nt_mkv3_m2	0.993	0.927	14	15	14	15	0.9333	1.0000	0.9333	D	-1
oligos_6nt_mkv3_m2	oligos_6nt_mkv3_m4	oligos_6nt_mkv3_m2	oligos_6nt_mkv3_m4	0.982	0.921	15	16	15	16	0.9375	1.0000	0.9375	D	-1
oligos_6nt_mkv3_m4	oligos_6nt_mkv3_m2	oligos_6nt_mkv3_m4	oligos_6nt_mkv3_m2	0.982	0.921	16	15	15	16	0.9375	0.9375	1.0000	D	1
oligos_7nt_mkv4_m1	oligos_6nt_mkv3_m1	oligos_7nt_mkv4_m1	oligos_6nt_mkv3_m1	0.967	0.893	13	12	12	13	0.9231	0.9231	1.0000	D	1
oligos_6nt_mkv3_m1	oligos_7nt_mkv4_m1	oligos_6nt_mkv3_m1	oligos_7nt_mkv4_m1	0.967	0.893	12	13	12	13	0.9231	1.0000	0.9231	D	-1
oligos_6nt_mkv3_m4	oligos_7nt_mkv4_m2	oligos_6nt_mkv3_m4	oligos_7nt_mkv4_m2	0.994	0.869	16	14	14	16	0.8750	0.8750	1.0000	D	2
oligos_7nt_mkv4_m2	oligos_6nt_mkv3_m4	oligos_7nt_mkv4_m2	oligos_6nt_mkv3_m4	0.994	0.869	14	16	14	16	0.8750	1.0000	0.8750	D	-2
positions_7nt_m1	oligos_7nt_mkv4_m1	positions_7nt_m1	oligos_7nt_mkv4_m1	0.971	0.821	11	13	11	13	0.8462	1.0000	0.8462	D	0
oligos_7nt_mkv4_m1	positions_7nt_m1	oligos_7nt_mkv4_m1	positions_7nt_m1	0.971	0.821	13	11	11	13	0.8462	0.8462	1.0000	D	0
oligos_7nt_mkv4_m1	positions_6nt_m1	oligos_7nt_mkv4_m1	positions_6nt_m1	0.971	0.821	13	11	11	13	0.8462	0.8462	1.0000	D	0
positions_6nt_m1	oligos_7nt_mkv4_m1	positions_6nt_m1	oligos_7nt_mkv4_m1	0.971	0.821	11	13	11	13	0.8462	1.0000	0.8462	D	0
positions_6nt_m2	positions_7nt_m2	positions_6nt_m2	positions_7nt_m2	0.964	0.803	11	11	10	12	0.8333	0.9091	0.9091	D	1
positions_7nt_m2	positions_6nt_m2	positions_7nt_m2	positions_6nt_m2	0.964	0.803	11	11	10	12	0.8333	0.9091	0.9091	D	-1
positions_6nt_m2	oligos_6nt_mkv3_m3	positions_6nt_m2	oligos_6nt_mkv3_m3	0.760	0.760	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv3_m3	positions_6nt_m2	oligos_6nt_mkv3_m3	positions_6nt_m2	0.760	0.760	11	11	11	11	1.0000	1.0000	1.0000	D	0
positions_6nt_m1	oligos_6nt_mkv3_m1	positions_6nt_m1	oligos_6nt_mkv3_m1	0.971	0.747	11	12	10	13	0.7692	0.9091	0.8333	D	1
oligos_6nt_mkv3_m1	positions_6nt_m1	oligos_6nt_mkv3_m1	positions_6nt_m1	0.971	0.747	12	11	10	13	0.7692	0.8333	0.9091	D	-1
positions_7nt_m1	oligos_6nt_mkv3_m1	positions_7nt_m1	oligos_6nt_mkv3_m1	0.970	0.746	11	12	10	13	0.7692	0.9091	0.8333	D	1
oligos_6nt_mkv3_m1	positions_7nt_m1	oligos_6nt_mkv3_m1	positions_7nt_m1	0.970	0.746	12	11	10	13	0.7692	0.8333	0.9091	D	-1
oligos_7nt_mkv4_m2	positions_7nt_m2	oligos_7nt_mkv4_m2	positions_7nt_m2	0.929	0.730	14	11	11	14	0.7857	0.7857	1.0000	D	3
positions_7nt_m2	oligos_7nt_mkv4_m2	positions_7nt_m2	oligos_7nt_mkv4_m2	0.929	0.730	11	14	11	14	0.7857	1.0000	0.7857	D	-3
positions_6nt_m2	oligos_7nt_mkv4_m2	positions_6nt_m2	oligos_7nt_mkv4_m2	0.922	0.725	11	14	11	14	0.7857	1.0000	0.7857	D	-2
oligos_7nt_mkv4_m2	positions_6nt_m2	oligos_7nt_mkv4_m2	positions_6nt_m2	0.922	0.725	14	11	11	14	0.7857	0.7857	1.0000	D	2
positions_7nt_m2	oligos_6nt_mkv3_m2	positions_7nt_m2	oligos_6nt_mkv3_m2	0.936	0.686	11	15	11	15	0.7333	1.0000	0.7333	D	-4
oligos_6nt_mkv3_m2	positions_7nt_m2	oligos_6nt_mkv3_m2	positions_7nt_m2	0.936	0.686	15	11	11	15	0.7333	0.7333	1.0000	D	4
oligos_6nt_mkv3_m2	positions_6nt_m2	oligos_6nt_mkv3_m2	positions_6nt_m2	0.918	0.673	15	11	11	15	0.7333	0.7333	1.0000	D	3
positions_6nt_m2	oligos_6nt_mkv3_m2	positions_6nt_m2	oligos_6nt_mkv3_m2	0.918	0.673	11	15	11	15	0.7333	1.0000	0.7333	D	-3
positions_7nt_m2	oligos_6nt_mkv3_m4	positions_7nt_m2	oligos_6nt_mkv3_m4	0.915	0.629	11	16	11	16	0.6875	1.0000	0.6875	D	-5
oligos_6nt_mkv3_m4	positions_7nt_m2	oligos_6nt_mkv3_m4	positions_7nt_m2	0.915	0.629	16	11	11	16	0.6875	0.6875	1.0000	D	5
positions_6nt_m2	oligos_6nt_mkv3_m4	positions_6nt_m2	oligos_6nt_mkv3_m4	0.915	0.629	11	16	11	16	0.6875	1.0000	0.6875	D	-4
oligos_6nt_mkv3_m4	positions_6nt_m2	oligos_6nt_mkv3_m4	positions_6nt_m2	0.915	0.629	16	11	11	16	0.6875	0.6875	1.0000	D	4
oligos_6nt_mkv3_m3	positions_7nt_m2	oligos_6nt_mkv3_m3	positions_7nt_m2	0.744	0.620	11	11	10	12	0.8333	0.9091	0.9091	D	1
positions_7nt_m2	oligos_6nt_mkv3_m3	positions_7nt_m2	oligos_6nt_mkv3_m3	0.744	0.620	11	11	10	12	0.8333	0.9091	0.9091	D	-1
oligos_7nt_mkv4_m3	positions_7nt_m2	oligos_7nt_mkv4_m3	positions_7nt_m2	0.705	0.588	11	11	10	12	0.8333	0.9091	0.9091	D	-1
positions_7nt_m2	oligos_7nt_mkv4_m3	positions_7nt_m2	oligos_7nt_mkv4_m3	0.705	0.588	11	11	10	12	0.8333	0.9091	0.9091	D	1
oligos_6nt_mkv3_m3	oligos_7nt_mkv4_m2	oligos_6nt_mkv3_m3	oligos_7nt_mkv4_m2	0.721	0.566	11	14	11	14	0.7857	1.0000	0.7857	D	-2
oligos_7nt_mkv4_m2	oligos_6nt_mkv3_m3	oligos_7nt_mkv4_m2	oligos_6nt_mkv3_m3	0.721	0.566	14	11	11	14	0.7857	0.7857	1.0000	D	2
oligos_6nt_mkv3_m2	oligos_6nt_mkv3_m3	oligos_6nt_mkv3_m2	oligos_6nt_mkv3_m3	0.713	0.523	15	11	11	15	0.7333	0.7333	1.0000	D	3
oligos_6nt_mkv3_m3	oligos_6nt_mkv3_m2	oligos_6nt_mkv3_m3	oligos_6nt_mkv3_m2	0.713	0.523	11	15	11	15	0.7333	1.0000	0.7333	D	-3
oligos_6nt_mkv3_m4	oligos_6nt_mkv3_m3	oligos_6nt_mkv3_m4	oligos_6nt_mkv3_m3	0.726	0.499	16	11	11	16	0.6875	0.6875	1.0000	D	4
oligos_6nt_mkv3_m3	oligos_6nt_mkv3_m4	oligos_6nt_mkv3_m3	oligos_6nt_mkv3_m4	0.726	0.499	11	16	11	16	0.6875	1.0000	0.6875	D	-4
positions_7nt_m2	positions_7nt_m1	positions_7nt_m2	positions_7nt_m1	0.859	0.491	11	11	8	14	0.5714	0.7273	0.7273	D	3
positions_7nt_m1	positions_7nt_m2	positions_7nt_m1	positions_7nt_m2	0.859	0.491	11	11	8	14	0.5714	0.7273	0.7273	D	-3
positions_7nt_m2	positions_6nt_m1	positions_7nt_m2	positions_6nt_m1	0.857	0.490	11	11	8	14	0.5714	0.7273	0.7273	D	3
positions_6nt_m1	positions_7nt_m2	positions_6nt_m1	positions_7nt_m2	0.857	0.490	11	11	8	14	0.5714	0.7273	0.7273	D	-3
oligos_7nt_mkv4_m2	positions_7nt_m1	oligos_7nt_mkv4_m2	positions_7nt_m1	0.942	0.443	14	11	8	17	0.4706	0.5714	0.7273	D	6
positions_7nt_m1	oligos_7nt_mkv4_m2	positions_7nt_m1	oligos_7nt_mkv4_m2	0.942	0.443	11	14	8	17	0.4706	0.7273	0.5714	D	-6
positions_6nt_m1	oligos_7nt_mkv4_m2	positions_6nt_m1	oligos_7nt_mkv4_m2	0.941	0.443	11	14	8	17	0.4706	0.7273	0.5714	D	-6
oligos_7nt_mkv4_m2	positions_6nt_m1	oligos_7nt_mkv4_m2	positions_6nt_m1	0.941	0.443	14	11	8	17	0.4706	0.5714	0.7273	D	6
positions_7nt_m2	oligos_7nt_mkv4_m1	positions_7nt_m2	oligos_7nt_mkv4_m1	0.857	0.428	11	13	8	16	0.5000	0.7273	0.6154	D	3
oligos_7nt_mkv4_m1	positions_7nt_m2	oligos_7nt_mkv4_m1	positions_7nt_m2	0.857	0.428	13	11	8	16	0.5000	0.6154	0.7273	D	-3
positions_7nt_m1	oligos_6nt_mkv3_m2	positions_7nt_m1	oligos_6nt_mkv3_m2	0.942	0.418	11	15	8	18	0.4444	0.7273	0.5333	D	-7
oligos_6nt_mkv3_m2	positions_7nt_m1	oligos_6nt_mkv3_m2	positions_7nt_m1	0.942	0.418	15	11	8	18	0.4444	0.5333	0.7273	D	7
positions_6nt_m1	oligos_6nt_mkv3_m2	positions_6nt_m1	oligos_6nt_mkv3_m2	0.940	0.418	11	15	8	18	0.4444	0.7273	0.5333	D	-7
oligos_6nt_mkv3_m2	positions_6nt_m1	oligos_6nt_mkv3_m2	positions_6nt_m1	0.940	0.418	15	11	8	18	0.4444	0.5333	0.7273	D	7
positions_6nt_m2	positions_7nt_m1	positions_6nt_m2	positions_7nt_m1	0.872	0.407	11	11	7	15	0.4667	0.6364	0.6364	D	4
positions_7nt_m1	positions_6nt_m2	positions_7nt_m1	positions_6nt_m2	0.872	0.407	11	11	7	15	0.4667	0.6364	0.6364	D	-4
positions_6nt_m2	positions_6nt_m1	positions_6nt_m2	positions_6nt_m1	0.870	0.406	11	11	7	15	0.4667	0.6364	0.6364	D	4
positions_6nt_m1	positions_6nt_m2	positions_6nt_m1	positions_6nt_m2	0.870	0.406	11	11	7	15	0.4667	0.6364	0.6364	D	-4
positions_7nt_m1	oligos_6nt_mkv3_m4	positions_7nt_m1	oligos_6nt_mkv3_m4	0.962	0.405	11	16	8	19	0.4211	0.7273	0.5000	D	-8
oligos_6nt_mkv3_m4	positions_7nt_m1	oligos_6nt_mkv3_m4	positions_7nt_m1	0.962	0.405	16	11	8	19	0.4211	0.5000	0.7273	D	8
oligos_6nt_mkv3_m4	positions_6nt_m1	oligos_6nt_mkv3_m4	positions_6nt_m1	0.961	0.405	16	11	8	19	0.4211	0.5000	0.7273	D	8
positions_6nt_m1	oligos_6nt_mkv3_m4	positions_6nt_m1	oligos_6nt_mkv3_m4	0.961	0.405	11	16	8	19	0.4211	0.7273	0.5000	D	-8
; Host name	rsat
; Job started	2025-05-26.211258
; Job done	2025-05-26.211313
; Seconds	0.83
;	user	0.83
;	system	0.51
;	cuser	11.67
;	csystem	1.88
