; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	9
;

; assembly # 1	seed: aaaaagg	3 assembled patterns	length 9
;  alignt	  rev_cpl	score
aaaaagg..	..ccttttt	5.15
.aaaaggc.	.gcctttt.	2.90
..aaaggca	tgccttt..	3.16
aaaaaggca	tgccttttt	5.15	best consensus

; assembly # 2	seed: caacaaa	4 assembled patterns	length 10
;   alignt	   rev_cpl	score
agcaaca...	...tgttgct	0.53
.gcaacaa..	..ttgttgc.	1.90
..caacaaa.	.tttgttg..	2.63
...aacaaaa	ttttgtt...	2.41
agcaacaaaa	ttttgttgct	2.63	best consensus

; assembly # 3	seed: actaaaa	1 assembled patterns	length 7
;alignt	rev_cpl	score
actaaaa	ttttagt	2.38
actaaaa	ttttagt	2.38	best consensus

; assembly # 4	seed: tagataa	1 assembled patterns	length 7
;alignt	rev_cpl	score
tagataa	ttatcta	0.02
tagataa	ttatcta	0.02	best consensus
; Host name	rsat
; Job started	2025-05-26.211243
; Job done	2025-05-26.211243
; Seconds	0.22
;	user	0.22
;	system	0.01
;	cuser	0
;	csystem	0
