AC  assembly_1
XX
ID  aaaaggca
XX
DE  nnAAAAGGCann
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         8.11      0.00      0.00      0.00
4         8.11      0.00      0.00      0.00
5         8.11      0.00      0.00      0.00
6         8.11      0.00      0.00      0.00
7         0.00      0.00      8.11      0.00
8         0.00      0.00      8.11      0.00
9         0.00      3.19      0.00      0.00
10        0.37      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
12        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 1
CC  id: assembly_1
CC  name: aaaaggca
CC  asmb.seed: aaaagg
CC  matrix.nb: 1
CC  sites: 3
CC  consensus.strict: --AAAAGGCa--
CC  consensus.strict.rc: --TGCCTTTT--
CC  consensus.IUPAC: nnAAAAGGCann
CC  consensus.IUPAC.rc: NNTGCCTTTTNN
CC  consensus.regexp: [acgt][acgt]AAAAGGCa[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TGCCTTTT[ACGT][ACGT]
XX
//
AC  assembly_2
XX
ID  aagcaacaaaa
XX
DE  nnaaGCAACAAAann
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         1.27      0.00      0.00      0.00
4         1.27      0.00      0.00      0.00
5         0.00      0.00      2.31      0.00
6         0.00      2.31      0.00      0.00
7         3.15      0.00      0.00      0.00
8         3.15      0.00      0.00      0.00
9         0.00      3.15      0.00      0.00
10        3.15      0.00      0.00      0.00
11        3.15      0.00      0.00      0.00
12        3.15      0.00      0.00      0.00
13        0.77      0.00      0.00      0.00
14        0.00      0.00      0.00      0.00
15        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 2
CC  id: assembly_2
CC  name: aagcaacaaaa
CC  asmb.seed: aacaaa
CC  matrix.nb: 2
CC  sites: 6
CC  consensus.strict: --aaGCAACAAAa--
CC  consensus.strict.rc: --TTTTGTTGCTT--
CC  consensus.IUPAC: nnaaGCAACAAAann
CC  consensus.IUPAC.rc: NNTTTTGTTGCTTNN
CC  consensus.regexp: [acgt][acgt]aaGCAACAAAa[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTTTGTTGCTT[ACGT][ACGT]
XX
//
AC  assembly_3
XX
ID  caagaaa
XX
DE  nncaagaaann
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      0.07      0.00      0.00
4         1.24      0.00      0.00      0.00
5         1.24      0.00      0.00      0.00
6         0.00      0.00      1.24      0.00
7         1.24      0.00      0.00      0.00
8         1.24      0.00      0.00      0.00
9         1.24      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 3
CC  id: assembly_3
CC  name: caagaaa
CC  asmb.seed: aagaaa
CC  matrix.nb: 3
CC  sites: 2
CC  consensus.strict: --caagaaa--
CC  consensus.strict.rc: --TTTCTTG--
CC  consensus.IUPAC: nncaagaaann
CC  consensus.IUPAC.rc: NNTTTCTTGNN
CC  consensus.regexp: [acgt][acgt]caagaaa[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTTCTTG[ACGT][ACGT]
XX
//
AC  assembly_4
XX
ID  agagcaacaaaa
XX
DE  nnagaGCAACAAAann
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.32      0.00      0.00      0.00
4         0.00      0.00      0.82      0.00
5         1.12      0.00      0.00      0.00
6         0.00      0.00      2.31      0.00
7         0.00      2.31      0.00      0.00
8         3.15      0.00      0.00      0.00
9         3.15      0.00      0.00      0.00
10        0.00      3.15      0.00      0.00
11        3.15      0.00      0.00      0.00
12        3.15      0.00      0.00      0.00
13        3.15      0.00      0.00      0.00
14        0.77      0.00      0.00      0.00
15        0.00      0.00      0.00      0.00
16        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 4
CC  id: assembly_4
CC  name: agagcaacaaaa
CC  asmb.seed: gagcaa
CC  matrix.nb: 4
CC  sites: 7
CC  consensus.strict: --agaGCAACAAAa--
CC  consensus.strict.rc: --TTTTGTTGCTCT--
CC  consensus.IUPAC: nnagaGCAACAAAann
CC  consensus.IUPAC.rc: NNTTTTGTTGCTCTNN
CC  consensus.regexp: [acgt][acgt]agaGCAACAAAa[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTTTGTTGCTCT[ACGT][ACGT]
XX
//
AC  assembly_5
XX
ID  ctcagcc
XX
DE  nnctcagccnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      0.43      0.00      0.00
4         0.00      0.00      0.00      0.43
5         0.00      0.43      0.00      0.00
6         0.43      0.00      0.00      0.00
7         0.00      0.00      0.43      0.00
8         0.00      0.43      0.00      0.00
9         0.00      0.10      0.00      0.00
10        0.00      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 5
CC  id: assembly_5
CC  name: ctcagcc
CC  asmb.seed: ctcagc
CC  matrix.nb: 5
CC  sites: 2
CC  consensus.strict: --ctcagcc--
CC  consensus.strict.rc: --GGCTGAG--
CC  consensus.IUPAC: nnctcagccnn
CC  consensus.IUPAC.rc: NNGGCTGAGNN
CC  consensus.regexp: [acgt][acgt]ctcagcc[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]GGCTGAG[ACGT][ACGT]
XX
//
