; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29719
;		c	0.20408
;		g	0.20498
;		t	0.29375
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
chr1:113216454-113216742	site	oligos_7nt_mkv4_m3	R	10	20	GAACTAAAAGG	8.7
chr1:113216454-113216742	site	oligos_7nt_mkv4_m3	R	10	20	GAACTAAAAGG	8.7
chr1:113216454-113216742	site	oligos_7nt_mkv4_m3	R	10	20	GAACTAAAAGG	8.7
chr1:144062466-144062749	site	oligos_7nt_mkv4_m3	R	-22	-12	GAACTAAAACA	9.6
chr1:177583641-177583805	site	oligos_7nt_mkv4_m3	D	-49	-39	ATACTAAAACA	9.2
chr1:212874668-212874996	site	oligos_7nt_mkv4_m3	D	-21	-11	GCACTAAAAGG	7.7
chr11:46599545-46599811	site	oligos_7nt_mkv4_m3	D	10	20	GAACTAAAAAG	8.5
chr11:46599545-46599811	site	oligos_7nt_mkv4_m3	D	10	20	GAACTAAAAAG	8.5
chr11:46599545-46599811	site	oligos_7nt_mkv4_m3	D	10	20	GAACTAAAAAG	8.5
chr11:46599545-46599811	site	oligos_7nt_mkv4_m3	D	10	20	GAACTAAAAAG	8.5
chr11:46599545-46599811	site	oligos_7nt_mkv4_m3	D	10	20	GAACTAAAAAG	8.5
chr11:46599545-46599811	site	oligos_7nt_mkv4_m3	D	10	20	GAACTAAAAAG	8.5
chr11:46599545-46599811	site	oligos_7nt_mkv4_m3	D	10	20	GAACTAAAAAG	8.5
chr11:46599545-46599811	site	oligos_7nt_mkv4_m3	D	10	20	GAACTAAAAAG	8.5
chr11:46599545-46599811	site	oligos_7nt_mkv4_m3	D	10	20	GAACTAAAAAG	8.5
chr11:46599545-46599811	site	oligos_7nt_mkv4_m3	D	10	20	GAACTAAAAAG	8.5
chr13:28441642-28441780	site	oligos_7nt_mkv4_m3	D	-12	-2	AAACTAAAAAG	7.9
chr13:68616538-68616787	site	oligos_7nt_mkv4_m3	R	36	46	GCACTAAAAGG	7.7
chr13:69037064-69037334	site	oligos_7nt_mkv4_m3	D	117	127	AAACTAGAACG	7.7
chr13:84501925-84502463	site	oligos_7nt_mkv4_m3	R	7	17	AAACTAAAAAG	7.9
chr13:84501925-84502463	site	oligos_7nt_mkv4_m3	R	31	41	AAACTAAAAAA	7.8
chr14:35438586-35438735	site	oligos_7nt_mkv4_m3	R	11	21	GAAATAAAACG	8.7
chr15:83730726-83730877	site	oligos_7nt_mkv4_m3	D	4	14	GCACTAAAACA	8.6
chr15:83730726-83730877	site	oligos_7nt_mkv4_m3	D	4	14	GCACTAAAACA	8.6
chr16:89912027-89912429	site	oligos_7nt_mkv4_m3	R	32	42	AAACTAAAAAG	7.9
chr17:2455070-2455364	site	oligos_7nt_mkv4_m3	R	4	14	AAACTAAAAAG	7.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:46764892-46765009	site	oligos_7nt_mkv4_m3	R	-52	-42	GAACTAATACA	8.9
chr18:47322436-47322550	site	oligos_7nt_mkv4_m3	D	-47	-37	AAACTAAAAGG	8.2
chr2:27733386-27733659	site	oligos_7nt_mkv4_m3	R	18	28	ACACTAAAATG	8.2
chr2:231923392-231923566	site	oligos_7nt_mkv4_m3	R	-74	-64	GTACTACAAGA	7.7
chr2:231923392-231923566	site	oligos_7nt_mkv4_m3	R	-74	-64	GTACTACAAGA	7.7
chr2:231923392-231923566	site	oligos_7nt_mkv4_m3	R	-74	-64	GTACTACAAGA	7.7
chr20:48553393-48553722	site	oligos_7nt_mkv4_m3	D	-16	-6	AGACTAAAACA	8.3
chr21:40412561-40412814	site	oligos_7nt_mkv4_m3	D	13	23	ACACTAAAAGG	7.6
chr22:43397541-43397843	site	oligos_7nt_mkv4_m3	D	71	81	GAACTAAAAGG	8.7
chr22:43397541-43397843	site	oligos_7nt_mkv4_m3	D	71	81	GAACTAAAAGG	8.7
chr22:43397541-43397843	site	oligos_7nt_mkv4_m3	D	71	81	GAACTAAAAGG	8.7
chr22:43397541-43397843	site	oligos_7nt_mkv4_m3	D	71	81	GAACTAAAAGG	8.7
chr3:10685391-10685785	site	oligos_7nt_mkv4_m3	D	154	164	AAACTAATACA	8.4
chr3:127859280-127859577	site	oligos_7nt_mkv4_m3	R	-1	9	AAACTAAAAAG	7.9
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr5:58544280-58544474	site	oligos_7nt_mkv4_m3	R	64	74	CAACTATAACA	8.0
chr6:87671321-87671553	site	oligos_7nt_mkv4_m3	D	-10	0	CGACTATAACC	7.6
chr6:133867239-133867450	site	oligos_7nt_mkv4_m3	D	-43	-33	AAACTAAAACG	10.5
chr7:27464269-27464594	site	oligos_7nt_mkv4_m3	D	-123	-113	GGACTAAAATC	7.5
chr7:27464269-27464594	site	oligos_7nt_mkv4_m3	R	82	92	AAACTAAAAGG	8.2
chr7:27464269-27464594	site	oligos_7nt_mkv4_m3	D	-123	-113	GGACTAAAATC	7.5
chr7:27464269-27464594	site	oligos_7nt_mkv4_m3	R	82	92	AAACTAAAAGG	8.2
chr7:27960554-27960833	site	oligos_7nt_mkv4_m3	R	24	34	AAACTAAAACT	7.7
chr7:157139736-157140063	site	oligos_7nt_mkv4_m3	D	34	44	AAACTAAAAAG	7.9
chr7:157139736-157140063	site	oligos_7nt_mkv4_m3	D	34	44	AAACTAAAAAG	7.9
chr7:157139736-157140063	site	oligos_7nt_mkv4_m3	D	34	44	AAACTAAAAAG	7.9
chr8:71259946-71260385	site	oligos_7nt_mkv4_m3	D	-193	-183	CAACTATAATG	7.8
chr8:71259946-71260385	site	oligos_7nt_mkv4_m3	D	-193	-183	CAACTATAATG	7.8
chr8:71259946-71260385	site	oligos_7nt_mkv4_m3	D	-193	-183	CAACTATAATG	7.8
chr8:71259946-71260385	site	oligos_7nt_mkv4_m3	D	-193	-183	CAACTATAATG	7.8
chr8:71259946-71260385	site	oligos_7nt_mkv4_m3	D	-193	-183	CAACTATAATG	7.8
chr8:71259946-71260385	site	oligos_7nt_mkv4_m3	D	-193	-183	CAACTATAATG	7.8
chr9:79610636-79610957	site	oligos_7nt_mkv4_m3	R	-32	-22	GTACTAAAAAG	8.5
chr9:128666779-128667030	site	oligos_7nt_mkv4_m3	R	-35	-25	GCAATAAAACG	7.6
chr9:128666779-128667030	site	oligos_7nt_mkv4_m3	R	-35	-25	GCAATAAAACG	7.6
chr9:128666779-128667030	site	oligos_7nt_mkv4_m3	R	-35	-25	GCAATAAAACG	7.6
chr9:128666779-128667030	site	oligos_7nt_mkv4_m3	R	-35	-25	GCAATAAAACG	7.6
chr9:128666779-128667030	site	oligos_7nt_mkv4_m3	R	-35	-25	GCAATAAAACG	7.6
chr9:128666779-128667030	site	oligos_7nt_mkv4_m3	R	-35	-25	GCAATAAAACG	7.6
chrX:99855519-99855639	site	oligos_7nt_mkv4_m3	D	-58	-48	ACACTAAAATA	8.6
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv4_m3	11	4	0	-33.400	10.000	43.400	a:0.297 c:0.204 g:0.205 t:0.294 
; Number of sequences scanned	705
; Sum of sequence lengths	157204
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv4_m3	103	0
;		TOTAL          	103	0
; Host name	rsat
; Job started	2025-05-26.211322
; Job done	2025-05-26.211322
; Seconds	0.2
;	user	0.2
;	system	0.02
;	cuser	0.11
;	csystem	0.03
