; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	17
;

; assembly # 1	seed: aaaagg	3 assembled patterns	length 8
; alignt	 rev_cpl	score
aaaagg..	..cctttt	8.11
.aaaggc.	.gccttt.	3.19
..aaggca	tgcctt..	0.37
aaaaggca	tgcctttt	8.11	best consensus

; assembly # 2	seed: aacaaa	6 assembled patterns	length 11
;    alignt	    rev_cpl	score
aagcaa.....	.....ttgctt	1.27
.agcaac....	....gttgct.	1.12
..gcaaca...	...tgttgc..	2.31
...caacaa..	..ttgttg...	1.86
....aacaaa.	.tttgtt....	3.15
.....acaaaa	ttttgt.....	0.77
aagcaacaaaa	ttttgttgctt	3.15	best consensus

; assembly # 3	seed: aagaaa	2 assembled patterns	length 7
;alignt	rev_cpl	score
caagaa.	.ttcttg	0.07
.aagaaa	tttctt.	1.24
caagaaa	tttcttg	1.24	best consensus

; assembly # 4	seed: gagcaa	7 assembled patterns	length 12
;     alignt	     rev_cpl	score
agagca......	......tgctct	0.32
.gagcaa.....	.....ttgctc.	0.82
..agcaac....	....gttgct..	1.12
...gcaaca...	...tgttgc...	2.31
....caacaa..	..ttgttg....	1.86
.....aacaaa.	.tttgtt.....	3.15
......acaaaa	ttttgt......	0.77
agagcaacaaaa	ttttgttgctct	3.15	best consensus

; assembly # 5	seed: ctcagc	2 assembled patterns	length 7
;alignt	rev_cpl	score
ctcagc.	.gctgag	0.43
.tcagcc	ggctga.	0.10
ctcagcc	ggctgag	0.43	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 1.
; Host name	rsat
; Job started	2025-05-26.211238
; Job done	2025-05-26.211239
; Seconds	0.52
;	user	0.52
;	system	0.01
;	cuser	0
;	csystem	0
