position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title znf492_2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 705 Sum of sequence lengths 157204 Min sequence length 0 Max sequence length 607 Average sequence length 222 Possible positions 157204 Oligonucleotide statistics: Total occurrences 39095 Position interval parameters: Position interval 20 Number of windows 32 Total positions 157204 Degrees of freedom 31 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -16 [-319,-300] -309.5 1 4 2 -15 [-299,-280] -289.5 1 20 3 -14 [-279,-260] -269.5 2 30 4 -13 [-259,-240] -249.5 4 52 5 -12 [-239,-220] -229.5 11 150 6 -11 [-219,-200] -209.5 18 342 7 -10 [-199,-180] -189.5 23 422 8 -9 [-179,-160] -169.5 59 707 9 -8 [-159,-140] -149.5 162 1909 10 -7 [-139,-120] -129.5 250 4077 11 -6 [-119,-100] -109.5 398 6826 12 -5 [-99,-80] -89.5 584 9588 13 -4 [-79,-60] -69.5 659 12702 14 -3 [-59,-40] -49.5 704 13966 15 -2 [-39,-20] -29.5 705 14094 16 -1 [-19,0] -9.5 705 14100 17 0 [1,20] 10.5 705 14100 18 1 [21,40] 30.5 705 14094 19 2 [41,60] 50.5 704 13921 20 3 [61,80] 70.5 657 12660 21 4 [81,100] 90.5 584 9357 22 5 [101,120] 110.5 386 6667 23 6 [121,140] 130.5 248 4008 24 7 [141,160] 150.5 162 1753 25 8 [161,180] 170.5 56 668 26 9 [181,200] 190.5 23 416 27 10 [201,220] 210.5 17 334 28 11 [221,240] 230.5 11 136 29 12 [241,260] 250.5 4 50 30 13 [261,280] 270.5 2 28 31 14 [281,300] 290.5 1 20 32 15 [301,320] 310.5 1 3 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -309.5 occurrences in window 1 [-319,-300] 11 -289.5 occurrences in window 2 [-299,-280] 12 -269.5 occurrences in window 3 [-279,-260] 13 -249.5 occurrences in window 4 [-259,-240] 14 -229.5 occurrences in window 5 [-239,-220] 15 -209.5 occurrences in window 6 [-219,-200] 16 -189.5 occurrences in window 7 [-199,-180] 17 -169.5 occurrences in window 8 [-179,-160] 18 -149.5 occurrences in window 9 [-159,-140] 19 -129.5 occurrences in window 10 [-139,-120] 20 -109.5 occurrences in window 11 [-119,-100] 21 -89.5 occurrences in window 12 [-99,-80] 22 -69.5 occurrences in window 13 [-79,-60] 23 -49.5 occurrences in window 14 [-59,-40] 24 -29.5 occurrences in window 15 [-39,-20] 25 -9.5 occurrences in window 16 [-19,0] 26 10.5 occurrences in window 17 [1,20] 27 30.5 occurrences in window 18 [21,40] 28 50.5 occurrences in window 19 [41,60] 29 70.5 occurrences in window 20 [61,80] 30 90.5 occurrences in window 21 [81,100] 31 110.5 occurrences in window 22 [101,120] 32 130.5 occurrences in window 23 [121,140] 33 150.5 occurrences in window 24 [141,160] 34 170.5 occurrences in window 25 [161,180] 35 190.5 occurrences in window 26 [181,200] 36 210.5 occurrences in window 27 [201,220] 37 230.5 occurrences in window 28 [221,240] 38 250.5 occurrences in window 29 [241,260] 39 270.5 occurrences in window 30 [261,280] 40 290.5 occurrences in window 31 [281,300] 41 310.5 occurrences in window 32 [301,320]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 11654 | 147.6 | 31 | 4.0e-17 | 1.6e-16 | 15.79 | 1 | 1 | 6 | 10 | 16 | 20 | 42 | 58 | 85 | 177 | 278 | 544 | 786 | 953 | 1016 | 1055 | 1069 | 1056 | 939 | 960 | 853 | 672 | 467 | 246 | 160 | 67 | 33 | 43 | 15 | 13 | 9 | 4 | 1 |
| g | g | 7984 | 132.8 | 31 | 1.5e-14 | 5.9e-14 | 13.23 | 2 | 1 | 9 | 8 | 10 | 20 | 13 | 28 | 64 | 129 | 226 | 338 | 526 | 647 | 693 | 707 | 659 | 633 | 671 | 642 | 627 | 471 | 371 | 231 | 133 | 46 | 23 | 19 | 17 | 10 | 6 | 6 | 0 |
| c | c | 7942 | 92.6 | 31 | 4.8e-08 | 1.9e-07 | 6.72 | 3 | 2 | 1 | 3 | 10 | 17 | 29 | 31 | 47 | 140 | 238 | 350 | 465 | 638 | 696 | 715 | 688 | 655 | 685 | 685 | 611 | 490 | 312 | 209 | 101 | 31 | 33 | 22 | 18 | 9 | 7 | 4 | 0 |
| t | t | 11515 | 63.6 | 31 | 4.9e-04 | 0.002 | 2.70 | 4 | 0 | 4 | 9 | 10 | 13 | 18 | 32 | 63 | 145 | 291 | 460 | 643 | 857 | 1000 | 965 | 1021 | 1091 | 1133 | 1081 | 941 | 679 | 452 | 295 | 156 | 58 | 38 | 15 | 18 | 13 | 6 | 6 | 2 |
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