/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Matrices
	file1	13 matrices	$RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	12	572
		file1	2	15	525
		file1	3	11	550
		file1	4	16	536
		file1	5	11	402
		file1	6	11	525
		file1	7	11	425
		file1	8	13	532
		file1	9	14	531
		file1	10	11	228
		file1	11	11	351
		...	3 more matrices
	file2	13 matrices	$RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.211230_2025-05-26.211230_ZHQlvw/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		12		572
		file2		2		15		525
		file2		3		11		550
		file2		4		16		536
		file2		5		11		402
		file2		6		11		525
		file2		7		11		425
		file2		8		13		532
		file2		9		14		531
		file2		10		11		228
		file2		11		11		351
		...	3 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_7nt_m1 positions_7nt_m1 positions_7nt_m1 positions_7nt_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_7nt_m2 positions_7nt_m2 positions_7nt_m2 positions_7nt_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 positions_6nt_m2 positions_6nt_m2 positions_6nt_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_7nt_m1 positions_6nt_m1 positions_7nt_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_7nt_m1 positions_6nt_m1 positions_7nt_m1 positions_6nt_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m2 oligos_7nt_mkv4_m2 0.993 0.927 15 14 14 15 0.9333 0.9333 1.0000 D 1
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m2 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m2 0.993 0.927 14 15 14 15 0.9333 1.0000 0.9333 D -1
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m4 0.982 0.921 15 16 15 16 0.9375 1.0000 0.9375 D -1
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m2 0.982 0.921 16 15 15 16 0.9375 0.9375 1.0000 D 1
oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 0.967 0.893 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 0.967 0.893 12 13 12 13 0.9231 1.0000 0.9231 D -1
oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m2 0.994 0.869 16 14 14 16 0.8750 0.8750 1.0000 D 2
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m4 0.994 0.869 14 16 14 16 0.8750 1.0000 0.8750 D -2
positions_7nt_m1 oligos_7nt_mkv4_m1 positions_7nt_m1 oligos_7nt_mkv4_m1 0.971 0.821 11 13 11 13 0.8462 1.0000 0.8462 D 0
oligos_7nt_mkv4_m1 positions_7nt_m1 oligos_7nt_mkv4_m1 positions_7nt_m1 0.971 0.821 13 11 11 13 0.8462 0.8462 1.0000 D 0
oligos_7nt_mkv4_m1 positions_6nt_m1 oligos_7nt_mkv4_m1 positions_6nt_m1 0.971 0.821 13 11 11 13 0.8462 0.8462 1.0000 D 0
positions_6nt_m1 oligos_7nt_mkv4_m1 positions_6nt_m1 oligos_7nt_mkv4_m1 0.971 0.821 11 13 11 13 0.8462 1.0000 0.8462 D 0
positions_6nt_m2 positions_7nt_m2 positions_6nt_m2 positions_7nt_m2 0.964 0.803 11 11 10 12 0.8333 0.9091 0.9091 D 1
positions_7nt_m2 positions_6nt_m2 positions_7nt_m2 positions_6nt_m2 0.964 0.803 11 11 10 12 0.8333 0.9091 0.9091 D -1
positions_6nt_m2 oligos_6nt_mkv3_m3 positions_6nt_m2 oligos_6nt_mkv3_m3 0.760 0.760 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m3 positions_6nt_m2 oligos_6nt_mkv3_m3 positions_6nt_m2 0.760 0.760 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 oligos_6nt_mkv3_m1 positions_6nt_m1 oligos_6nt_mkv3_m1 0.971 0.747 11 12 10 13 0.7692 0.9091 0.8333 D 1
oligos_6nt_mkv3_m1 positions_6nt_m1 oligos_6nt_mkv3_m1 positions_6nt_m1 0.971 0.747 12 11 10 13 0.7692 0.8333 0.9091 D -1
positions_7nt_m1 oligos_6nt_mkv3_m1 positions_7nt_m1 oligos_6nt_mkv3_m1 0.970 0.746 11 12 10 13 0.7692 0.9091 0.8333 D 1
oligos_6nt_mkv3_m1 positions_7nt_m1 oligos_6nt_mkv3_m1 positions_7nt_m1 0.970 0.746 12 11 10 13 0.7692 0.8333 0.9091 D -1
oligos_7nt_mkv4_m2 positions_7nt_m2 oligos_7nt_mkv4_m2 positions_7nt_m2 0.929 0.730 14 11 11 14 0.7857 0.7857 1.0000 D 3
positions_7nt_m2 oligos_7nt_mkv4_m2 positions_7nt_m2 oligos_7nt_mkv4_m2 0.929 0.730 11 14 11 14 0.7857 1.0000 0.7857 D -3
positions_6nt_m2 oligos_7nt_mkv4_m2 positions_6nt_m2 oligos_7nt_mkv4_m2 0.922 0.725 11 14 11 14 0.7857 1.0000 0.7857 D -2
oligos_7nt_mkv4_m2 positions_6nt_m2 oligos_7nt_mkv4_m2 positions_6nt_m2 0.922 0.725 14 11 11 14 0.7857 0.7857 1.0000 D 2
positions_7nt_m2 oligos_6nt_mkv3_m2 positions_7nt_m2 oligos_6nt_mkv3_m2 0.936 0.686 11 15 11 15 0.7333 1.0000 0.7333 D -4
oligos_6nt_mkv3_m2 positions_7nt_m2 oligos_6nt_mkv3_m2 positions_7nt_m2 0.936 0.686 15 11 11 15 0.7333 0.7333 1.0000 D 4
oligos_6nt_mkv3_m2 positions_6nt_m2 oligos_6nt_mkv3_m2 positions_6nt_m2 0.918 0.673 15 11 11 15 0.7333 0.7333 1.0000 D 3
positions_6nt_m2 oligos_6nt_mkv3_m2 positions_6nt_m2 oligos_6nt_mkv3_m2 0.918 0.673 11 15 11 15 0.7333 1.0000 0.7333 D -3
positions_7nt_m2 oligos_6nt_mkv3_m4 positions_7nt_m2 oligos_6nt_mkv3_m4 0.915 0.629 11 16 11 16 0.6875 1.0000 0.6875 D -5
oligos_6nt_mkv3_m4 positions_7nt_m2 oligos_6nt_mkv3_m4 positions_7nt_m2 0.915 0.629 16 11 11 16 0.6875 0.6875 1.0000 D 5
positions_6nt_m2 oligos_6nt_mkv3_m4 positions_6nt_m2 oligos_6nt_mkv3_m4 0.915 0.629 11 16 11 16 0.6875 1.0000 0.6875 D -4
oligos_6nt_mkv3_m4 positions_6nt_m2 oligos_6nt_mkv3_m4 positions_6nt_m2 0.915 0.629 16 11 11 16 0.6875 0.6875 1.0000 D 4
oligos_6nt_mkv3_m3 positions_7nt_m2 oligos_6nt_mkv3_m3 positions_7nt_m2 0.744 0.620 11 11 10 12 0.8333 0.9091 0.9091 D 1
positions_7nt_m2 oligos_6nt_mkv3_m3 positions_7nt_m2 oligos_6nt_mkv3_m3 0.744 0.620 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv4_m3 positions_7nt_m2 oligos_7nt_mkv4_m3 positions_7nt_m2 0.705 0.588 11 11 10 12 0.8333 0.9091 0.9091 D -1
positions_7nt_m2 oligos_7nt_mkv4_m3 positions_7nt_m2 oligos_7nt_mkv4_m3 0.705 0.588 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m2 0.721 0.566 11 14 11 14 0.7857 1.0000 0.7857 D -2
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m3 0.721 0.566 14 11 11 14 0.7857 0.7857 1.0000 D 2
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m3 0.713 0.523 15 11 11 15 0.7333 0.7333 1.0000 D 3
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m2 0.713 0.523 11 15 11 15 0.7333 1.0000 0.7333 D -3
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m3 0.726 0.499 16 11 11 16 0.6875 0.6875 1.0000 D 4
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m4 0.726 0.499 11 16 11 16 0.6875 1.0000 0.6875 D -4
positions_7nt_m2 positions_7nt_m1 positions_7nt_m2 positions_7nt_m1 0.859 0.491 11 11 8 14 0.5714 0.7273 0.7273 D 3
positions_7nt_m1 positions_7nt_m2 positions_7nt_m1 positions_7nt_m2 0.859 0.491 11 11 8 14 0.5714 0.7273 0.7273 D -3
positions_7nt_m2 positions_6nt_m1 positions_7nt_m2 positions_6nt_m1 0.857 0.490 11 11 8 14 0.5714 0.7273 0.7273 D 3
positions_6nt_m1 positions_7nt_m2 positions_6nt_m1 positions_7nt_m2 0.857 0.490 11 11 8 14 0.5714 0.7273 0.7273 D -3
oligos_7nt_mkv4_m2 positions_7nt_m1 oligos_7nt_mkv4_m2 positions_7nt_m1 0.942 0.443 14 11 8 17 0.4706 0.5714 0.7273 D 6
positions_7nt_m1 oligos_7nt_mkv4_m2 positions_7nt_m1 oligos_7nt_mkv4_m2 0.942 0.443 11 14 8 17 0.4706 0.7273 0.5714 D -6
positions_6nt_m1 oligos_7nt_mkv4_m2 positions_6nt_m1 oligos_7nt_mkv4_m2 0.941 0.443 11 14 8 17 0.4706 0.7273 0.5714 D -6
oligos_7nt_mkv4_m2 positions_6nt_m1 oligos_7nt_mkv4_m2 positions_6nt_m1 0.941 0.443 14 11 8 17 0.4706 0.5714 0.7273 D 6
positions_7nt_m2 oligos_7nt_mkv4_m1 positions_7nt_m2 oligos_7nt_mkv4_m1 0.857 0.428 11 13 8 16 0.5000 0.7273 0.6154 D 3
oligos_7nt_mkv4_m1 positions_7nt_m2 oligos_7nt_mkv4_m1 positions_7nt_m2 0.857 0.428 13 11 8 16 0.5000 0.6154 0.7273 D -3
positions_7nt_m1 oligos_6nt_mkv3_m2 positions_7nt_m1 oligos_6nt_mkv3_m2 0.942 0.418 11 15 8 18 0.4444 0.7273 0.5333 D -7
oligos_6nt_mkv3_m2 positions_7nt_m1 oligos_6nt_mkv3_m2 positions_7nt_m1 0.942 0.418 15 11 8 18 0.4444 0.5333 0.7273 D 7
positions_6nt_m1 oligos_6nt_mkv3_m2 positions_6nt_m1 oligos_6nt_mkv3_m2 0.940 0.418 11 15 8 18 0.4444 0.7273 0.5333 D -7
oligos_6nt_mkv3_m2 positions_6nt_m1 oligos_6nt_mkv3_m2 positions_6nt_m1 0.940 0.418 15 11 8 18 0.4444 0.5333 0.7273 D 7
positions_6nt_m2 positions_7nt_m1 positions_6nt_m2 positions_7nt_m1 0.872 0.407 11 11 7 15 0.4667 0.6364 0.6364 D 4
positions_7nt_m1 positions_6nt_m2 positions_7nt_m1 positions_6nt_m2 0.872 0.407 11 11 7 15 0.4667 0.6364 0.6364 D -4
positions_6nt_m2 positions_6nt_m1 positions_6nt_m2 positions_6nt_m1 0.870 0.406 11 11 7 15 0.4667 0.6364 0.6364 D 4
positions_6nt_m1 positions_6nt_m2 positions_6nt_m1 positions_6nt_m2 0.870 0.406 11 11 7 15 0.4667 0.6364 0.6364 D -4
positions_7nt_m1 oligos_6nt_mkv3_m4 positions_7nt_m1 oligos_6nt_mkv3_m4 0.962 0.405 11 16 8 19 0.4211 0.7273 0.5000 D -8
oligos_6nt_mkv3_m4 positions_7nt_m1 oligos_6nt_mkv3_m4 positions_7nt_m1 0.962 0.405 16 11 8 19 0.4211 0.5000 0.7273 D 8
oligos_6nt_mkv3_m4 positions_6nt_m1 oligos_6nt_mkv3_m4 positions_6nt_m1 0.961 0.405 16 11 8 19 0.4211 0.5000 0.7273 D 8
positions_6nt_m1 oligos_6nt_mkv3_m4 positions_6nt_m1 oligos_6nt_mkv3_m4 0.961 0.405 11 16 8 19 0.4211 0.7273 0.5000 D -8 
 Host name	rsat
 Job started	2025-05-26.211258
 Job done	2025-05-26.211313
 Seconds	0.83
	user	0.83
	system	0.51
	cuser	11.67
;	csystem	1.88