rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO


rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_query_matrices.transfac -from transfac -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/oct4_peak_motifs_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/oct4_peak_motifs_input_motifs_processed_1.tf -from tf -to transfac -prefix_id oct4_peak_motifs -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/oct4_peak_motifs_input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_second_matrices. -from transfac -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/oct4_meme-chip_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/oct4_meme-chip_input_motifs_processed_1.tf -from tf -to transfac -prefix_id oct4_meme-chip -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/oct4_meme-chip_input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_third_matrices.transfac -from transfac -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/oct4_homer_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/oct4_homer_input_motifs_processed_1.tf -from tf -to transfac -prefix_id oct4_homer -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/oct4_homer_input_motifs_processed.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/oct4_peak_motifs_input_motifs_processed.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/oct4_meme-chip_input_motifs_processed.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/oct4_homer_input_motifs_processed.tf  > /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/motif


 cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'cor_0.6_Ncor_0.4_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering'; "


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_1_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_2_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_2_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_3_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_3_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_4_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_4_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_5_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_5_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_6_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_6_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_7_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_7_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_8_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_8_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_9_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_9_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_10_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_10_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_11_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_11_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_12_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_12_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/cluster_13_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/cluster_13_transfac_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m5_homer_5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_10/cluster_10_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m8_homer_8_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices_temp.tf -from tf -to tf  -attr name cluster_11 -attr accession cluster_11 -set_attr merged_AC 'oct4_homer:::homer_8' -set_attr merged_ID 'homer_8' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_10/cluster_10_matrices_temp.tf -from tf -to tf  -attr name cluster_10 -attr accession cluster_10 -set_attr merged_AC 'oct4_homer:::homer_5' -set_attr merged_ID 'homer_5' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_10/cluster_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102647_0YL1g6


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102647_kVGOgY


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102647_U6KX40


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_10/cluster_10_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m7_homer_7_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m6_MEME_ChIP_6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m13_MEME_ChIP_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m14_MEME_ChIP_14_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices_temp.tf -from tf -to tf  -attr name cluster_12 -attr accession cluster_12 -set_attr merged_AC 'oct4_homer:::homer_7' -set_attr merged_ID 'homer_7' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices_temp.tf -from tf -to tf  -attr name cluster_13 -attr accession cluster_13 -set_attr merged_AC 'oct4_meme-chip:::MEME_ChIP_6' -set_attr merged_ID 'MEME_ChIP_6' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102648_7xKGIg


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102648_lNhLRU


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102648_RiQuGm


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m12_oligos_8nt_mkv6_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m13_oligos_8nt_mkv6_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m4_homer_4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m12_oligos_8nt_mkv6_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m13_oligos_8nt_mkv6_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m16_homer_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m18_homer_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m19_homer_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m5_MEME_ChIP_5_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m6_homer_6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m16_homer_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m18_homer_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m22_MEME_ChIP_22_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m6_homer_6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m16_homer_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m18_homer_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102649_sSa6bf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102649_EbzQWz


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102649_p5Cfqj


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102649_sdZkyE


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102649_Os0rOS


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102649_8BTZ0P


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102649_nGRblt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102649_vdppBR


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m15_oligos_8nt_mkv6_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m4_homer_4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m12_oligos_8nt_mkv6_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m13_oligos_8nt_mkv6_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m10_MEME_ChIP_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m25_MEME_ChIP_25_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m14_oligos_8nt_mkv6_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m15_oligos_8nt_mkv6_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m4_homer_4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m12_oligos_8nt_mkv6_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m13_oligos_8nt_mkv6_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m15_MEME_ChIP_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m19_positions_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m19_homer_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m5_MEME_ChIP_5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m14_oligos_8nt_mkv6_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m15_oligos_8nt_mkv6_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m4_homer_4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m12_oligos_8nt_mkv6_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m13_oligos_8nt_mkv6_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102650_yEopdN


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102650_PfGE6U


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102650_5oPXt9


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102650_bT4QBe


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102650_jjoeHm


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102650_ZrMxrg


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m2_MEME_ChIP_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m9_MEME_ChIP_9_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m8_MEME_ChIP_8_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m2_MEME_ChIP_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m9_MEME_ChIP_9_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m12_homer_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m8_MEME_ChIP_8_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m2_MEME_ChIP_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m9_MEME_ChIP_9_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m1_homer_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m10_MEME_ChIP_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m25_MEME_ChIP_25_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102651_vugUl5


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102651_wcYJaA


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102651_K6u0mf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102651_1oEqH6


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102651_xzBGNs


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m15_homer_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m3_homer_3_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_node_15_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m3_oligos_7nt_mkv5_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m12_homer_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m8_MEME_ChIP_8_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m2_MEME_ChIP_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m9_MEME_ChIP_9_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_node_15_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102652_mvOH6z


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102652_PzPrQG


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102652_EQ5krK


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102652_ctQnRx


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_15/cluster_1_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m11_positions_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m21_positions_8nt_m3_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_17/cluster_1_node_17_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_16/cluster_1_node_16_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m2_oligos_7nt_mkv5_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_18/cluster_1_node_18_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_17/cluster_1_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_17/cluster_1_node_17_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_16/cluster_1_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_16/cluster_1_node_16_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_18/cluster_1_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_18/cluster_1_node_18_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_18/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102653_Kgu6WT


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_17/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102653_xlW6yt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_16/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102653_yrCazf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_17/cluster_1_node_17_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_18/cluster_1_node_18_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_16/cluster_1_node_16_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m9_homer_9_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m11_positions_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m21_positions_8nt_m3_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_20/cluster_1_node_20_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m7_local_words_7nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m13_MEME_ChIP_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m14_MEME_ChIP_14_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_21/cluster_1_node_21_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_19/cluster_1_node_19_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_20/cluster_1_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_20/cluster_1_node_20_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_19/cluster_1_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_19/cluster_1_node_19_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_21/cluster_1_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_21/cluster_1_node_21_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_19/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102654_co9d4F


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_21/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102654_NDCagu


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_20/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102654_49UGc7


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_21/cluster_1_node_21_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_19/cluster_1_node_19_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_20/cluster_1_node_20_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m11_homer_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m2_homer_2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m4_MEME_ChIP_4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m7_MEME_ChIP_7_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_22/cluster_1_node_22_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m2_oligos_7nt_mkv5_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_23/cluster_1_node_23_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_22/cluster_1_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_22/cluster_1_node_22_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_23/cluster_1_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_23/cluster_1_node_23_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102655_bgmz3I


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102655_pYQ0A0


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_22/cluster_1_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102655_wfq0Vm


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_23/cluster_1_nb_motifs_10.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102655_lYwuTV


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_22/cluster_1_node_22_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_23/cluster_1_node_23_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m14_homer_14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m4_MEME_ChIP_4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m7_MEME_ChIP_7_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m19_positions_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m1_homer_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m10_MEME_ChIP_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m25_MEME_ChIP_25_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_24/cluster_1_node_24_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_24/cluster_1_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_24/cluster_1_node_24_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102656_4QZ2UN


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_24/cluster_1_nb_motifs_9.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102656_GbPKs3


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_24/cluster_1_node_24_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m20_positions_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m9_positions_7nt_m1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_26/cluster_1_node_26_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m1_MEME_ChIP_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m15_MEME_ChIP_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_25/cluster_1_node_25_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_26/cluster_1_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_26/cluster_1_node_26_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_25/cluster_1_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_25/cluster_1_node_25_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_26/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102657_UtIINM


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_25/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102657_Xj4CDr


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_25/cluster_1_node_25_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_26/cluster_1_node_26_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m10_homer_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices_temp.tf -from tf -to tf  -attr name cluster_8 -attr accession cluster_8 -set_attr merged_AC 'oct4_homer:::homer_10' -set_attr merged_ID 'homer_10' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m22_positions_8nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m4_oligos_7nt_mkv5_m4_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_28/cluster_1_node_28_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_28/cluster_1_node_28_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_28/cluster_1_node_28_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m7_local_words_7nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m13_MEME_ChIP_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m14_MEME_ChIP_14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m2_oligos_7nt_mkv5_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_27/cluster_1_node_27_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m13_homer_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m7_local_words_7nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m13_MEME_ChIP_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m14_MEME_ChIP_14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m2_oligos_7nt_mkv5_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_29/cluster_1_node_29_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_27/cluster_1_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_27/cluster_1_node_27_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_29/cluster_1_node_29_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_29/cluster_1_node_29_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_28/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102658_a4UtCV


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_27/cluster_1_nb_motifs_13.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102658_BhRDOm


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_29/cluster_1_nb_motifs_14.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102658_mQyj3G


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_28/cluster_1_node_28_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_27/cluster_1_node_27_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_29/cluster_1_node_29_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m17_homer_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_9/cluster_9_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_9/cluster_9_matrices_temp.tf -from tf -to tf  -attr name cluster_9 -attr accession cluster_9 -set_attr merged_AC 'oct4_homer:::homer_17' -set_attr merged_ID 'homer_17' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_9/cluster_9_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m1_MEME_ChIP_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m15_MEME_ChIP_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m13_homer_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m7_local_words_7nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m13_MEME_ChIP_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m14_MEME_ChIP_14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m2_oligos_7nt_mkv5_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_30/cluster_1_node_30_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_30/cluster_1_node_30_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_30/cluster_1_node_30_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_9/cluster_9_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_30/cluster_1_nb_motifs_19.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102659_fWOtvl


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_30/cluster_1_node_30_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m3_MEME_ChIP_3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m22_positions_8nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m4_oligos_7nt_mkv5_m4_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_32/cluster_1_node_32_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m8_local_words_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m19_positions_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m1_homer_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m10_MEME_ChIP_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m25_MEME_ChIP_25_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_31/cluster_1_node_31_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_32/cluster_1_node_32_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_32/cluster_1_node_32_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_31/cluster_1_node_31_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_31/cluster_1_node_31_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_32/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102700_FLpbCN


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_31/cluster_1_nb_motifs_10.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102700_LLhI5e


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_32/cluster_1_node_32_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_31/cluster_1_node_31_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m20_positions_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m9_positions_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m8_local_words_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m19_positions_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m1_homer_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m10_MEME_ChIP_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m25_MEME_ChIP_25_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_33/cluster_1_node_33_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_33/cluster_1_node_33_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_33/cluster_1_node_33_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m1_MEME_ChIP_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m15_MEME_ChIP_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m13_homer_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m7_local_words_7nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m13_MEME_ChIP_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m14_MEME_ChIP_14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m2_oligos_7nt_mkv5_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m20_positions_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m9_positions_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m8_local_words_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m19_positions_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m1_homer_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m10_MEME_ChIP_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m25_MEME_ChIP_25_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_34/cluster_1_node_34_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_34/cluster_1_node_34_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_34/cluster_1_node_34_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_33/cluster_1_nb_motifs_12.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102701_3w4CVG


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_34/cluster_1_nb_motifs_31.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102701_72b10B


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_33/cluster_1_node_33_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_34/cluster_1_node_34_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m9_homer_9_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m11_positions_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m21_positions_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m1_MEME_ChIP_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m15_MEME_ChIP_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m13_homer_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m7_local_words_7nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m13_MEME_ChIP_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m14_MEME_ChIP_14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m2_oligos_7nt_mkv5_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m20_positions_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m9_positions_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m8_local_words_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m19_positions_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m1_homer_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m10_MEME_ChIP_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m25_MEME_ChIP_25_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_35/cluster_1_node_35_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_35/cluster_1_node_35_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_35/cluster_1_node_35_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_35/cluster_1_nb_motifs_34.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102702_CsbSns


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_35/cluster_1_node_35_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m3_MEME_ChIP_3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m22_positions_8nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m4_oligos_7nt_mkv5_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m9_homer_9_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m11_positions_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m21_positions_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m1_MEME_ChIP_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m15_MEME_ChIP_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m13_homer_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m7_local_words_7nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m13_MEME_ChIP_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m14_MEME_ChIP_14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m2_oligos_7nt_mkv5_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m20_positions_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m9_positions_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m8_local_words_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m19_positions_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_homer_m1_homer_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m10_MEME_ChIP_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/oct4_meme-chip_m25_MEME_ChIP_25_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_36/cluster_1_node_36_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_36/cluster_1_node_36_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_36/cluster_1_node_36_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_36/cluster_1_nb_motifs_37.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.102703_MK4Kbp


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_36/cluster_1_node_36_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


rm -r /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_pairwise_compa_logos


cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_logo_tree.html


cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_portable_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_portable_logo_tree.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_html/pairwise_compa_matrix_descriptions.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/distance_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/alignment_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters_motif_names.html


mv -f /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_portable_logo_tree.html


 cat /var/www/html/rsat/R-scripts/heatmap_clusters_by_collection.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " cluster.counts.file = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters_summary_table.tab'; heatmap.table.d3 = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/collection_heatmap_tab.tsv'; attributes.list.file = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/collection_heatmap_order.tab'; percent.table.file = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters_summary_percent_table.tab'; coverage.table.file = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters_summary_coverage_contingency_table.tab'; motif.richness.table = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_motif_richness.tsv'; coverage.table.d3 = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/convergency_heatmap_tab.tsv'; coverage.heatmap.attributes.file = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/convergency_heatmap_attributes.tab'; coverage.json.folder = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_coverage_json'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; root.motifs.table = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_root_motifs_table.tab'; "


cp /var/www/html/rsat/public_html/templates_html/dynamic_heatmap_d3.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_dynamic_heatmap.html


mv /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_dynamic_heatmap.html


cp /var/www/html/rsat/public_html/templates_html/dynamic_heatmap_d3_and_tables_motif_collection_coverage.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_dynamic_coverage_heatmap.html


mv /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_dynamic_coverage_heatmap.html
; matrix-clustering  -v 1 -max_matrices 300 -matrix oct4_peak_motifs $RSAT/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_query_matrices.transfac transfac -matrix oct4_meme-chip $RSAT/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_second_matrices. transfac -matrix oct4_homer $RSAT/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_third_matrices.transfac transfac -hclust_method average -calc sum -title oct4_motifs_found_in_chen_2008_peak_sets_discovered_by_peak-motifs,_meme-chip_and_homer -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.4 -quick -label_in_tree name -return json,heatmap -o $RSAT/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering
; Program version       	1.05
; Number of matrices          	66
; Output files
;	central_motifs_tf           	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_central_motifs_transfac.tf
;	motif_richness_tsv          	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_motif_richness.tsv
;	reference_compa_html        	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_html/Root_vs_reference_collection_compa.html
;	pairwise_compa              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/pairwise_compa.tab
;	temp_html_2                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_temporary_2.html
;	consensus_cladogram_json    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_trees/tree.json
;	alignment_table             	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/alignment_table.tab
;	distance_table_html         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/distance_table.html
;	coverage_json_folder        	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_coverage_json
;	input_matrices              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf
;	distance_table              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/distance_table.tab
;	alignment_table_html        	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/alignment_table.html
;	hexa_colors                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_hexa_colors.txt
;	heatmap_collections_d3      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/collection_heatmap_tab.tsv
;	Rlog                        	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_Rlog.txt
;	heatmap_coverage_d3         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/convergency_heatmap_tab.tsv
;	logo_cladogram_html         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_logo_tree.html
;	pairwise_compa_html         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_html/pairwise_compa.html
;	int_align                   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/intermediate_alignments.tab
;	temp_html_3                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_temporary_3.html
;	html_index                  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_html/index.html
;	cluster_IDs_names           	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_cluster_IDs.txt
;	heatmap_collections_attributes	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/collection_heatmap_order.tab
;	small_forest_export         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_small_forest.html
;	reference_compa             	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/Root_vs_reference_collection_compa.tab
;	err_log                     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_errors.txt
;	heatmap_coverage_attributes 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/convergency_heatmap_attributes.tab
;	all_concatenated_motifs     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
;	root_motifs                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_cluster_root_motifs.tf
;	small_logo_cladogram_html   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_portable_logo_tree.html
;	matrix_descriptions         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab
;	radial_tree                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_radial_tree.html
;	matrix_descriptions_html    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_html/pairwise_compa_matrix_descriptions.html
;	ref_collection_tf           	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_reference_collection.tf
;	nb_clusters_table           	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/number_of_clusters.tab
;	archive                     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_archive.zip
;	clusters_table              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters.tab
;	internal_nodes_attributes_table	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/internal_nodes_attributes.tab
;	dynamic_coverage_heatmap_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_dynamic_coverage_heatmap.html
;	clusters_table_motif_names  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters_motif_names.tab
;	radial_tree_template        	/var/www/html/rsat/public_html/templates_html/Radial_tree_template.html
;	coverage_table              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters_summary_coverage_contingency_table.tab
;	log                         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_log.txt
;	heatmap_jpg                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_figures/heatmap.jpg
;	summary_temp                	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_SUMMARY_TEMP.html
;	root_motifs_table           	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_root_motifs_table.tab
;	motif_richness_barplot_html 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_motif_richness_barplot.html
;	percent_table               	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters_summary_percent_table.tab
;	cluster_summary_table       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters_summary_table.tab
;	heatmap_pdf                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_figures/heatmap.pdf
;	clusters_table_html         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters.html
;	motif_file                  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data/input_motifs_processed.tf
;	clusters_table_motif_names_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/clusters_motif_names.html
;	central_motifs_IDs_temp     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_central_motifs_IDs_temporal.tab
;	prefix                      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering
;	temp_html                   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_temporary.html
;	summary                     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_SUMMARY.html
;	central_motifs              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_central_motifs_IDs.tab
;	dynamic_heatmap_html        	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_dynamic_heatmap.html
; Directories
;	output                      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO
;	data                        	/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_data
; Host name	rsat
; Job started	2025-05-30.102628
; Job done	2025-05-30.102710
; Seconds	1.21
;	user	1.21
;	system	0.62
;	cuser	83.58
;	csystem	17.22