/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.102627_UMluAO/matrix-clustering_tables/alignment_table.tab


id name cluster strand offset_up offset_down width aligned_consensus aligned_consensus_rc
oct4_peak_motifs_m16_local_words_8nt_m1 local_words_8nt_m1 cluster_1 R 4 2 24 ++++WHATTTGCATAACAAWRS++ ++sywTTgTTATGCAAATdw++++
oct4_peak_motifs_m17_local_words_8nt_m2 local_words_8nt_m2 cluster_1 D 4 2 24 ++++whATTTGCATAAcAAwrs++ ++SYWTTGTTATGCAAATDW++++
oct4_peak_motifs_m5_local_words_7nt_m1 local_words_7nt_m1 cluster_1 R 4 2 24 ++++WHATTTGCATAACAAWRS++ ++sywTTgTtATGCAAAtdw++++
oct4_peak_motifs_m6_local_words_7nt_m2 local_words_7nt_m2 cluster_1 D 4 2 24 ++++whaTTTGCATaAcAAwrs++ ++SYWTTGTTATGCAAATDW++++
oct4_peak_motifs_m10_positions_7nt_m2 positions_7nt_m2 cluster_1 D 4 2 24 ++++whaTTTGCATaAcAAwrs++ ++SYWTTGTTATGCAAATDW++++
oct4_meme-chip_m21_MEME_ChIP_21 MEME_ChIP_21 cluster_1 R 6 9 24 ++++++ATTWGCATA+++++++++ +++++++++TATGcwAAT++++++
oct4_meme-chip_m24_MEME_ChIP_24 MEME_ChIP_24 cluster_1 R 6 9 24 ++++++ATTWRCATA+++++++++ +++++++++TATGywAAT++++++
oct4_meme-chip_m13_MEME_ChIP_13 MEME_ChIP_13 cluster_1 R 2 6 24 ++KYKMATTWGCATAMWA++++++ ++++++twkTATGCWAATkmrm++
oct4_meme-chip_m14_MEME_ChIP_14 MEME_ChIP_14 cluster_1 R 2 6 24 ++KYTMATTWGCATAHWR++++++ ++++++ywdTATGCWAATkarm++
oct4_meme-chip_m16_MEME_ChIP_16 MEME_ChIP_16 cluster_1 R 4 8 24 ++++WMATTWRCATAW++++++++ ++++++++wTATGywAATkw++++
oct4_meme-chip_m18_MEME_ChIP_18 MEME_ChIP_18 cluster_1 R 4 8 24 ++++WMATTWGCATAW++++++++ ++++++++wTATGcwAATkw++++
oct4_meme-chip_m20_MEME_ChIP_20 MEME_ChIP_20 cluster_1 R 6 9 24 ++++++ATTWGCATA+++++++++ +++++++++TATGCwAAT++++++
oct4_meme-chip_m15_MEME_ChIP_15 MEME_ChIP_15 cluster_1 R 6 9 24 ++++++ATTTGCATA+++++++++ +++++++++TATGCAAAT++++++
oct4_meme-chip_m10_MEME_ChIP_10 MEME_ChIP_10 cluster_1 R 6 3 24 ++++++ATTTGCATRWSAAWR+++ +++ywTTswyATGCAaAt++++++
oct4_meme-chip_m25_MEME_ChIP_25 MEME_ChIP_25 cluster_1 D 6 3 24 ++++++aTtwGCATawsAAwr+++ +++YWTTSWTATGCWAAT++++++
oct4_peak_motifs_m19_positions_8nt_m1 positions_8nt_m1 cluster_1 R 3 2 24 +++KWCATTTGCATAACAATRS++ ++syaTTgTtATGCAAATgwm+++
oct4_homer_m1_homer_1 homer_1 cluster_1 R 7 3 24 +++++++TTTGCATAWSAAWR+++ +++ywTTswtATGcAaA+++++++
oct4_peak_motifs_m1_oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 cluster_1 R 4 8 24 ++++WCATTTGCATWW++++++++ ++++++++wwATGCAAATgw++++
oct4_meme-chip_m11_MEME_ChIP_11 MEME_ChIP_11 cluster_1 R 5 8 24 +++++AATTWGCATAW++++++++ ++++++++wTATGcwAATt+++++
oct4_meme-chip_m12_MEME_ChIP_12 MEME_ChIP_12 cluster_1 R 5 7 24 +++++MATTWGCATAWT+++++++ +++++++awTATGCwAATk+++++
oct4_meme-chip_m17_MEME_ChIP_17 MEME_ChIP_17 cluster_1 R 4 7 24 ++++WAATTWGCATAWW+++++++ +++++++wwTATGCwAATtw++++
oct4_meme-chip_m19_MEME_ChIP_19 MEME_ChIP_19 cluster_1 R 3 7 24 +++CTMATTWGCATAWT+++++++ +++++++awTATGCwAATkAg+++
oct4_meme-chip_m23_MEME_ChIP_23 MEME_ChIP_23 cluster_1 D 3 8 24 +++ykmATTTGCATrw++++++++ ++++++++WYATGCAAATKMR+++
oct4_peak_motifs_m11_positions_7nt_m4 positions_7nt_m4 cluster_1 D 3 7 24 +++yaTATGCGCATAtr+++++++ +++++++YATATGCGCATATR+++
oct4_peak_motifs_m21_positions_8nt_m3 positions_8nt_m3 cluster_1 R 2 6 24 ++GCATATGCGCATATGC++++++ ++++++gcaTATGCGCATAtgc++
oct4_peak_motifs_m2_oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 cluster_1 R 5 8 24 +++++AATTAGCATWW++++++++ ++++++++wwATGCTAAtt+++++
oct4_peak_motifs_m18_local_words_8nt_m3 local_words_8nt_m3 cluster_1 D 4 8 24 ++++dmATATGCATrw++++++++ ++++++++WYATGCATATKH++++
oct4_homer_m9_homer_9 homer_9 cluster_1 R 4 6 24 ++++AWATGCGCATAYSM++++++ ++++++ksrTATGCGCATwt++++
oct4_peak_motifs_m7_local_words_7nt_m3 local_words_7nt_m3 cluster_1 R 4 6 24 ++++WCATTTGCATATSW++++++ ++++++wsATATGCAAATgw++++
oct4_meme-chip_m1_MEME_ChIP_1 MEME_ChIP_1 cluster_1 R 7 10 24 +++++++TTWRCAT++++++++++ ++++++++++ATGYwAA+++++++
oct4_peak_motifs_m9_positions_7nt_m1 positions_7nt_m1 cluster_1 R 4 0 24 ++++WYATTTGCATATGCAAATRW wyaTtTgCATATGcAaAtrw++++
oct4_peak_motifs_m20_positions_8nt_m2 positions_8nt_m2 cluster_1 D 5 1 24 +++++yayATGCATATGCATrtr+ +YAYATGCATATGCATRTR+++++
oct4_peak_motifs_m4_oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 cluster_1 D 10 2 24 ++++++++++rmATAACAATrr++ ++YYATTGTTATKY++++++++++
oct4_peak_motifs_m22_positions_8nt_m4 positions_8nt_m4 cluster_1 D 9 3 24 +++++++++wrCATGACAAwr+++ +++YWTTGTCATGYW+++++++++
oct4_homer_m13_homer_13 homer_13 cluster_1 D 4 10 24 ++++kmATtWGCAW++++++++++ ++++++++++WTGCWAATKM++++
oct4_peak_motifs_m8_local_words_7nt_m4 local_words_7nt_m4 cluster_1 D 0 2 24 kyaTTgTTaTGCAtAAcAAtrm++ ++KYATTGTTATGCATAACAATRM
oct4_meme-chip_m3_MEME_ChIP_3 MEME_ChIP_3 cluster_1 D 12 4 24 ++++++++++++WTTGTYAT++++ ++++ATrACAAw++++++++++++
oct4_peak_motifs_m12_oligos_8nt_mkv6_m1 oligos_8nt_mkv6_m1 cluster_2 D 2 0 14 ++sgCGCAGGCGss SSCGCCTGCGCS++
oct4_peak_motifs_m13_oligos_8nt_mkv6_m2 oligos_8nt_mkv6_m2 cluster_2 D 2 0 14 ++ygCGCatGCGcr YGCGCATGCGCR++
oct4_homer_m4_homer_4 homer_4 cluster_2 R 0 0 14 MSYGCGCATGCGCR yGCGCAtGCGCrsk
oct4_meme-chip_m5_MEME_ChIP_5 MEME_ChIP_5 cluster_2 D 2 4 14 ++TGCGCAkr++++ ++++YMTGCGCA++
oct4_homer_m19_homer_19 homer_19 cluster_2 R 2 2 14 ++TGCGCATGCG++ ++CGCATGCGCA++
oct4_peak_motifs_m15_oligos_8nt_mkv6_m4 oligos_8nt_mkv6_m4 cluster_2 D 2 0 14 ++SSCGGCTGCGSS ssCGCAGCCGss++
oct4_peak_motifs_m14_oligos_8nt_mkv6_m3 oligos_8nt_mkv6_m3 cluster_2 R 2 0 14 ++SSCGGAAGCGSS ssCGCTTCCGss++
oct4_homer_m16_homer_16 homer_16 cluster_3 R 6 4 20 ++++++YTKKKTTTTK++++ ++++mAaAammmAr++++++
oct4_homer_m18_homer_18 homer_18 cluster_3 R 6 4 20 ++++++TTTTTTTTTT++++ ++++AAAAAAAAAA++++++
oct4_homer_m6_homer_6 homer_6 cluster_3 D 2 4 20 ++CAAAACAAAACAAA++++ ++++TTTGTTtTGtTtTG++
oct4_meme-chip_m22_MEME_ChIP_22 MEME_ChIP_22 cluster_3 D 0 0 20 CMWWMWAAAMAMARMAAMMK mKkTTkyTkTkTttwkwwkG
oct4_meme-chip_m2_MEME_ChIP_2 MEME_ChIP_2 cluster_4 D 0 3 11 CCMCdCCC+++ +++GGGHGKGG
oct4_meme-chip_m9_MEME_ChIP_9 MEME_ChIP_9 cluster_4 D 0 0 11 CCCCwCCyCCm KGGRGGWGGGG
oct4_meme-chip_m8_MEME_ChIP_8 MEME_ChIP_8 cluster_4 D 2 1 11 ++GGMGGMGG+ +CCkCCkCC++
oct4_homer_m12_homer_12 homer_12 cluster_4 R 0 1 11 YYYYYYYYYY+ +rRrrrrrrrR
oct4_peak_motifs_m3_oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 cluster_4 D 0 0 11 SSGAGGGCGSS ssCGCCCTCss
oct4_homer_m3_homer_3 homer_3 cluster_5 D 0 0 14 sCtsCTGCTgCybs SVRGCAGCAGSAGS
oct4_homer_m15_homer_15 homer_15 cluster_5 R 0 4 14 SCWGCWGCWG++++ ++++CwGCwGCwGs
oct4_meme-chip_m4_MEME_ChIP_4 MEME_ChIP_4 cluster_6 D 4 0 10 ++++rGGAAr YTTCCY++++
oct4_meme-chip_m7_MEME_ChIP_7 MEME_ChIP_7 cluster_6 D 3 1 10 +++CwGGrA+ +TYCCWG+++
oct4_homer_m14_homer_14 homer_14 cluster_6 R 0 0 10 YTSCWGRRAR ytyyCwgsar
oct4_homer_m2_homer_2 homer_2 cluster_7 D 0 0 14 aGgCwGGsCTkGrr YYCMAGSCCWGCCT
oct4_homer_m11_homer_11 homer_11 cluster_7 R 3 1 14 +++SWRRGCWGRG+ +cyCwGcyyws+++
oct4_homer_m10_homer_10 homer_10 cluster_8 D 0 0 10 sCWkkstyWg CWRASMMWGS
oct4_homer_m17_homer_17 homer_17 cluster_9 D 0 0 10 TGTGTGTGTG CACACACACA
oct4_homer_m5_homer_5 homer_5 cluster_10 D 0 0 14 rGGGGCGGRGCsks SMSGCYCCGCCCCY
oct4_homer_m8_homer_8 homer_8 cluster_11 D 0 0 14 kkrGgTGTGgycyt ARGRCCACACCYMM
oct4_homer_m7_homer_7 homer_7 cluster_12 D 0 0 14 kCCCAgCaCCCACa TGTGGGTGCTGGGM
oct4_meme-chip_m6_MEME_ChIP_6 MEME_ChIP_6 cluster_13 D 0 0 8 CAAGGTCA TGACCTTG