

rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF


rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_query_matrices.homer -from homer -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/wt_top1_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/wt_top1_input_motifs_processed_1.tf -from tf -to transfac -prefix_id wt_top1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/wt_top1_input_motifs_processed.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/wt_top1_input_motifs_processed.tf  > /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/motif


 cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'cor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'Ncor_0.4_cor_0.6_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering'; "


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_1_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_2_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_2_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_3_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_3_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_4_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_4_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_5_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_5_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_6_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_6_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_7_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_7_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_8_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_8_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_9_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_9_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_10_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_10_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_11_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_11_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_12_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_12_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_13_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_13_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_14_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_14_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_15_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_15_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_16_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_16_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_17_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_17_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_18_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_18_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_19_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_19_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_20_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_20_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_21_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_21_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_22_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_22_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_23_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_23_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_24_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_24_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_25_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_25_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_26_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_26_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_27_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_27_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_28_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_28_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_29_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_29_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/cluster_30_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_data/cluster_30_transfac_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m23_homer_23.AGTCTGAACA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_1/cluster_1_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m7_homer_7.GYCATTGTKAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_10/cluster_10_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m12_homer_12.CCAATCCAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_1/cluster_1_matrices_temp.tf -from tf -to tf  -attr name cluster_1 -attr accession cluster_1 -set_attr merged_AC 'wt_top1:::homer_23.AGTCTGAACA' -set_attr merged_ID 'homer_23.AGTCTGAACA' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_1/cluster_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_10/cluster_10_matrices_temp.tf -from tf -to tf  -attr name cluster_10 -attr accession cluster_10 -set_attr merged_AC 'wt_top1:::homer_7.GYCATTGTKAAT' -set_attr merged_ID 'homer_7.GYCATTGTKAAT' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_10/cluster_10_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices_temp.tf -from tf -to tf  -attr name cluster_11 -attr accession cluster_11 -set_attr merged_AC 'wt_top1:::homer_12.CCAATCCAAT' -set_attr merged_ID 'homer_12.CCAATCCAAT' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_1/cluster_1_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_10/cluster_10_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m4_homer_4.GGGCACSAVTCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m10_homer_10.GCAGAGTCTT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m27_homer_27.NNCTTGGTCCGN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices_temp.tf -from tf -to tf  -attr name cluster_12 -attr accession cluster_12 -set_attr merged_AC 'wt_top1:::homer_4.GGGCACSAVTCC' -set_attr merged_ID 'homer_4.GGGCACSAVTCC' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices_temp.tf -from tf -to tf  -attr name cluster_14 -attr accession cluster_14 -set_attr merged_AC 'wt_top1:::homer_27.NNCTTGGTCCGN' -set_attr merged_ID 'homer_27.NNCTTGGTCCGN' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices_temp.tf -from tf -to tf  -attr name cluster_13 -attr accession cluster_13 -set_attr merged_AC 'wt_top1:::homer_10.GCAGAGTCTT' -set_attr merged_ID 'homer_10.GCAGAGTCTT' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m24_homer_24.GAGGACAGGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m5_homer_5.CCAAAAACCTCT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m32_homer_32.AGTWYCTATTCT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices_temp.tf -from tf -to tf  -attr name cluster_16 -attr accession cluster_16 -set_attr merged_AC 'wt_top1:::homer_5.CCAAAAACCTCT' -set_attr merged_ID 'homer_5.CCAAAAACCTCT' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices_temp.tf -from tf -to tf  -attr name cluster_17 -attr accession cluster_17 -set_attr merged_AC 'wt_top1:::homer_32.AGTWYCTATTCT' -set_attr merged_ID 'homer_32.AGTWYCTATTCT' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices_temp.tf -from tf -to tf  -attr name cluster_15 -attr accession cluster_15 -set_attr merged_AC 'wt_top1:::homer_24.GAGGACAGGT' -set_attr merged_ID 'homer_24.GAGGACAGGT' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m9_homer_9.AGGAATTTAGKM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m30_homer_30.AATTAGTC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_2/cluster_2_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m14_homer_14.ARGCACDGYG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m29_homer_29.TAAGCCACAG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices_temp.tf -from tf -to tf  -attr name cluster_18 -attr accession cluster_18 -set_attr merged_AC 'wt_top1:::homer_9.AGGAATTTAGKM' -set_attr merged_ID 'homer_9.AGGAATTTAGKM' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_2/cluster_2_matrices_temp.tf -from tf -to tf  -attr name cluster_2 -attr accession cluster_2 -set_attr merged_AC 'wt_top1:::homer_30.AATTAGTC' -set_attr merged_ID 'homer_30.AATTAGTC' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_2/cluster_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.140321_QBeSQ7


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_2/cluster_2_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m1_homer_1.GGTAGCCGGCTD_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_20/cluster_20_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m25_homer_25.CCCGGCTCGGGA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_21/cluster_21_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_20/cluster_20_matrices_temp.tf -from tf -to tf  -attr name cluster_20 -attr accession cluster_20 -set_attr merged_AC 'wt_top1:::homer_1.GGTAGCCGGCTD' -set_attr merged_ID 'homer_1.GGTAGCCGGCTD' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_20/cluster_20_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_21/cluster_21_matrices_temp.tf -from tf -to tf  -attr name cluster_21 -attr accession cluster_21 -set_attr merged_AC 'wt_top1:::homer_25.CCCGGCTCGGGA' -set_attr merged_ID 'homer_25.CCCGGCTCGGGA' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_21/cluster_21_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_20/cluster_20_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_21/cluster_21_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m21_homer_21.TCYGGWCCGGAN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_23/cluster_23_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m22_homer_22.GAAYAGGTGAGA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_24/cluster_24_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m13_homer_13.TGTRCCSCAGWY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m8_homer_8.GTCTGGCGCA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_node_1_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_23/cluster_23_matrices_temp.tf -from tf -to tf  -attr name cluster_23 -attr accession cluster_23 -set_attr merged_AC 'wt_top1:::homer_21.TCYGGWCCGGAN' -set_attr merged_ID 'homer_21.TCYGGWCCGGAN' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_23/cluster_23_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_24/cluster_24_matrices_temp.tf -from tf -to tf  -attr name cluster_24 -attr accession cluster_24 -set_attr merged_AC 'wt_top1:::homer_22.GAAYAGGTGAGA' -set_attr merged_ID 'homer_22.GAAYAGGTGAGA' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_24/cluster_24_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_22 -name cluster_22 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_23/cluster_23_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_24/cluster_24_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/IC_test_2025-05-30.140323_GwOdkC


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m16_homer_16.CCGGGCTACTTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_25/cluster_25_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m17_homer_17.GACMGCTKCT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_26/cluster_26_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_25/cluster_25_matrices_temp.tf -from tf -to tf  -attr name cluster_25 -attr accession cluster_25 -set_attr merged_AC 'wt_top1:::homer_16.CCGGGCTACTTG' -set_attr merged_ID 'homer_16.CCGGGCTACTTG' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_25/cluster_25_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_26/cluster_26_matrices_temp.tf -from tf -to tf  -attr name cluster_26 -attr accession cluster_26 -set_attr merged_AC 'wt_top1:::homer_17.GACMGCTKCT' -set_attr merged_ID 'homer_17.GACMGCTKCT' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_26/cluster_26_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_26/cluster_26_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_25/cluster_25_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m18_homer_18.GAACCAGACAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_27/cluster_27_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m15_homer_15.CTCGAGTCGMGM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_28/cluster_28_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m6_homer_6.WACACCCRYAMR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_29/cluster_29_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_27/cluster_27_matrices_temp.tf -from tf -to tf  -attr name cluster_27 -attr accession cluster_27 -set_attr merged_AC 'wt_top1:::homer_18.GAACCAGACAGC' -set_attr merged_ID 'homer_18.GAACCAGACAGC' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_27/cluster_27_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_29/cluster_29_matrices_temp.tf -from tf -to tf  -attr name cluster_29 -attr accession cluster_29 -set_attr merged_AC 'wt_top1:::homer_6.WACACCCRYAMR' -set_attr merged_ID 'homer_6.WACACCCRYAMR' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_29/cluster_29_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_28/cluster_28_matrices_temp.tf -from tf -to tf  -attr name cluster_28 -attr accession cluster_28 -set_attr merged_AC 'wt_top1:::homer_15.CTCGAGTCGMGM' -set_attr merged_ID 'homer_15.CTCGAGTCGMGM' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_28/cluster_28_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_28/cluster_28_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_29/cluster_29_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_27/cluster_27_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m11_homer_11.GTGAGTGGACCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_3/cluster_3_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m28_homer_28.CTTAGAATCCAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_30/cluster_30_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m19_homer_19.TCTGGTGAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_4/cluster_4_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_3/cluster_3_matrices_temp.tf -from tf -to tf  -attr name cluster_3 -attr accession cluster_3 -set_attr merged_AC 'wt_top1:::homer_11.GTGAGTGGACCA' -set_attr merged_ID 'homer_11.GTGAGTGGACCA' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_3/cluster_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_4/cluster_4_matrices_temp.tf -from tf -to tf  -attr name cluster_4 -attr accession cluster_4 -set_attr merged_AC 'wt_top1:::homer_19.TCTGGTGAGT' -set_attr merged_ID 'homer_19.TCTGGTGAGT' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_4/cluster_4_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_30/cluster_30_matrices_temp.tf -from tf -to tf  -attr name cluster_30 -attr accession cluster_30 -set_attr merged_AC 'wt_top1:::homer_28.CTTAGAATCCAG' -set_attr merged_ID 'homer_28.CTTAGAATCCAG' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_30/cluster_30_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_3/cluster_3_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_4/cluster_4_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_30/cluster_30_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m20_homer_20.CAATCGCG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_5/cluster_5_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m2_homer_2.RAGTTCCGCGSG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m31_homer_31.CACGGGAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_5/cluster_5_matrices_temp.tf -from tf -to tf  -attr name cluster_5 -attr accession cluster_5 -set_attr merged_AC 'wt_top1:::homer_20.CAATCGCG' -set_attr merged_ID 'homer_20.CAATCGCG' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_5/cluster_5_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices_temp.tf -from tf -to tf  -attr name cluster_7 -attr accession cluster_7 -set_attr merged_AC 'wt_top1:::homer_31.CACGGGAC' -set_attr merged_ID 'homer_31.CACGGGAC' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices_temp.tf -from tf -to tf  -attr name cluster_6 -attr accession cluster_6 -set_attr merged_AC 'wt_top1:::homer_2.RAGTTCCGCGSG' -set_attr merged_ID 'homer_2.RAGTTCCGCGSG' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_5/cluster_5_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m3_homer_3.CCCGTGTGGGCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/wt_top1_m26_homer_26.TGTGTATTCCAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_9/cluster_9_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices_temp.tf -from tf -to tf  -attr name cluster_8 -attr accession cluster_8 -set_attr merged_AC 'wt_top1:::homer_3.CCCGTGTGGGCC' -set_attr merged_ID 'homer_3.CCCGTGTGGGCC' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_9/cluster_9_matrices_temp.tf -from tf -to tf  -attr name cluster_9 -attr accession cluster_9 -set_attr merged_AC 'wt_top1:::homer_26.TGTGTATTCCAC' -set_attr merged_ID 'homer_26.TGTGTATTCCAC' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_9/cluster_9_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_9/cluster_9_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


rm -r /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_pairwise_compa_logos


cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_logo_tree.html


cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_portable_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_portable_logo_tree.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_html/pairwise_compa_matrix_descriptions.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/distance_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/alignment_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/clusters.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_tables/clusters_motif_names.html


mv -f /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2025/05/30/matrix-clustering_2025-05-30.140306_psZTRF/matrix-clustering_portable_logo_tree.html
