position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/03/peak-motifs.2025-06-03.065440_2025-06-03.065440_xAFzzE/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title morc3chip_thresh5_mergedist200 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/03/peak-motifs.2025-06-03.065440_2025-06-03.065440_xAFzzE/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/06/03/peak-motifs.2025-06-03.065440_2025-06-03.065440_xAFzzE/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/06/03/peak-motifs.2025-06-03.065440_2025-06-03.065440_xAFzzE/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 2399 Sum of sequence lengths 433389 Min sequence length 0 Max sequence length 1000 Average sequence length 180 Possible positions 433389 Oligonucleotide statistics: Total occurrences 146322 Position interval parameters: Position interval 20 Number of windows 50 Total positions 433389 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 19 380 2 -24 [-479,-460] -469.5 20 399 3 -23 [-459,-440] -449.5 21 402 4 -22 [-439,-420] -429.5 22 422 5 -21 [-419,-400] -409.5 24 460 6 -20 [-399,-380] -389.5 25 484 7 -19 [-379,-360] -369.5 26 508 8 -18 [-359,-340] -349.5 28 534 9 -17 [-339,-320] -329.5 31 598 10 -16 [-319,-300] -309.5 33 636 11 -15 [-299,-280] -289.5 40 754 12 -14 [-279,-260] -269.5 49 873 13 -13 [-259,-240] -249.5 61 1095 14 -12 [-239,-220] -229.5 86 1490 15 -11 [-219,-200] -209.5 123 2142 16 -10 [-199,-180] -189.5 180 3013 17 -9 [-179,-160] -169.5 274 4640 18 -8 [-159,-140] -149.5 401 6819 19 -7 [-139,-120] -129.5 595 10054 20 -6 [-119,-100] -109.5 844 14406 21 -5 [-99,-80] -89.5 1141 19916 22 -4 [-79,-60] -69.5 1511 26840 23 -3 [-59,-40] -49.5 1884 34427 24 -2 [-39,-20] -29.5 2174 40961 25 -1 [-19,0] -9.5 2399 45624 26 0 [1,20] 10.5 2368 45386 27 1 [21,40] 30.5 2163 40679 28 2 [41,60] 50.5 1870 34092 29 3 [61,80] 70.5 1498 26453 30 4 [81,100] 90.5 1126 19622 31 5 [101,120] 110.5 830 14149 32 6 [121,140] 130.5 581 9861 33 7 [141,160] 150.5 396 6699 34 8 [161,180] 170.5 270 4546 35 9 [181,200] 190.5 176 2960 36 10 [201,220] 210.5 120 2105 37 11 [221,240] 230.5 86 1463 38 12 [241,260] 250.5 61 1080 39 13 [261,280] 270.5 49 863 40 14 [281,300] 290.5 40 746 41 15 [301,320] 310.5 33 636 42 16 [321,340] 330.5 31 593 43 17 [341,360] 350.5 28 532 44 18 [361,380] 370.5 26 506 45 19 [381,400] 390.5 25 484 46 20 [401,420] 410.5 24 457 47 21 [421,440] 430.5 22 421 48 22 [441,460] 450.5 21 401 49 23 [461,480] 470.5 20 398 50 24 [481,500] 490.5 19 380 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 37620 | 3345.1 | 49 | 0.0e+00 | 0 | 300 | 1 | 77 | 87 | 97 | 89 | 102 | 102 | 119 | 120 | 122 | 118 | 138 | 159 | 170 | 242 | 299 | 350 | 497 | 664 | 875 | 1261 | 1636 | 2034 | 2749 | 3107 | 3668 | 3560 | 3058 | 2566 | 2027 | 1625 | 1259 | 946 | 665 | 491 | 425 | 321 | 254 | 193 | 170 | 143 | 132 | 112 | 107 | 98 | 114 | 98 | 94 | 92 | 103 | 85 |
| c | c | 35935 | 2770.2 | 49 | 0.0e+00 | 0 | 300 | 2 | 72 | 88 | 91 | 100 | 77 | 121 | 96 | 105 | 110 | 121 | 135 | 180 | 194 | 213 | 298 | 345 | 482 | 653 | 875 | 1171 | 1594 | 1918 | 2472 | 3048 | 3701 | 3623 | 2959 | 2533 | 1910 | 1464 | 1127 | 871 | 609 | 428 | 325 | 265 | 230 | 160 | 167 | 136 | 96 | 97 | 105 | 83 | 96 | 92 | 74 | 84 | 71 | 70 |
| t | t | 36568 | 2276.9 | 49 | 0.0e+00 | 0 | 300 | 3 | 98 | 66 | 80 | 88 | 96 | 111 | 94 | 85 | 90 | 116 | 146 | 142 | 187 | 221 | 281 | 352 | 522 | 712 | 946 | 1235 | 1585 | 2033 | 2506 | 2962 | 3674 | 3686 | 3132 | 2698 | 2007 | 1575 | 1131 | 811 | 609 | 450 | 307 | 256 | 182 | 171 | 145 | 133 | 103 | 98 | 76 | 93 | 91 | 89 | 74 | 67 | 74 | 82 |
| g | g | 36199 | 1961.9 | 49 | 0.0e+00 | 0 | 300 | 4 | 83 | 78 | 57 | 70 | 95 | 66 | 96 | 85 | 104 | 107 | 124 | 130 | 172 | 230 | 284 | 369 | 450 | 665 | 904 | 1167 | 1444 | 1959 | 2560 | 3095 | 3636 | 3617 | 3021 | 2612 | 2051 | 1625 | 1161 | 880 | 663 | 489 | 357 | 273 | 190 | 162 | 128 | 137 | 114 | 94 | 66 | 77 | 77 | 89 | 69 | 61 | 73 | 83 |
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