RSAT - peak-motifs result

Analysis: morc3chip_thresh5_mergedist200 (03/06/2025 06:55)

peak-motifs  -v 1 -title morc3chip_thresh5_mergedist200 -i $RSAT/public_html/tmp/www-data/2025/06/03/peak-motifs.2025-06-03.065440_2025-06-03.065440_xAFzzE/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/06/03/peak-motifs.2025-06-03.065440_2025-06-03.065440_xAFzzE

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: ctgcggcaa (sig=30.23; e-value=5.9e-31) RC: ttgccgcag oligos_6nt_mkv3_m2 assembly: gtctgtcc (sig=13.39; e-value=4.1e-14) RC: ggacagac oligos_6nt_mkv3_m3 assembly: tcagcacca (sig=11.75; e-value=1.8e-12) RC: tggtgctga oligos_6nt_mkv3_m4 assembly: aataaa (sig=4.57; e-value=2.7e-05) RC: tttatt oligos_6nt_mkv3_m5 assembly: cgcggcaa (sig=30.23; e-value=5.9e-31) RC: ttgccgcg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: tcagcacca (sig=15.30; e-value=5e-16) RC: tggtgctga oligos_7nt_mkv4_m2 assembly: gctgtcca (sig=11.36; e-value=4.4e-12) RC: tggacagc oligos_7nt_mkv4_m3 assembly: tgcggcaa (sig=9.06; e-value=8.7e-10) RC: ttgccgca oligos_7nt_mkv4_m4 assembly: acagctcc (sig=4.91; e-value=1.2e-05) RC: ggagctgt oligos_7nt_mkv4_m5 assembly: ccgaaacc (sig=4.72; e-value=1.9e-05) RC: ggtttcgg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=30.23; evalue=5.9e-31 kyyTGCGGCAAra TYTTGCCGCARRM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 468 (19.51%) Max nb of predicted sites per peak: 6  (chr13:64169755-64170094) Mean nb of predicted sites per peak: 1.41	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=13.39; evalue=4.1e-14 stGTCTGTCCtk MAGGACAGACAS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 261 (10.88%) Max nb of predicted sites per peak: 20  (chrY:90811915-90812458) Mean nb of predicted sites per peak: 1.37	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=11.75; evalue=1.8e-12 ttTCRGCACCArc GYTGGTGCYGAAA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 399 (16.63%) Max nb of predicted sites per peak: 7  (chr2:39806789-39807074) Mean nb of predicted sites per peak: 1.35	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=4.57; evalue=2.7e-05 dtAATAAArm KYTTTATTAH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 649 (27.05%) Max nb of predicted sites per peak: 7  (chr6:15716210-15716521) Mean nb of predicted sites per peak: 1.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=30.23; evalue=5.9e-31 yyyGCGGCAarr YYTTGCCGCRRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 303 (12.63%) Max nb of predicted sites per peak: 9  (chr2:26648235-26648339) Mean nb of predicted sites per peak: 1.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=15.30; evalue=5e-16 ttTCRGCACCarc GYTGGTGCYGAAA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 386 (16.09%) Max nb of predicted sites per peak: 7  (chr2:39806789-39807074) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=11.36; evalue=4.4e-12 ktGCTGTCCAyg CRTGGACAGCAM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 209 (8.71%) Max nb of predicted sites per peak: 7  (chr2:39806789-39807074) Mean nb of predicted sites per peak: 1.65	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=9.06; evalue=8.7e-10 yyTGCgGCAAra TYTTGCCGCARR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 456 (19.01%) Max nb of predicted sites per peak: 5  (chr7:127611000-127612206) Mean nb of predicted sites per peak: 1.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=4.91; evalue=1.2e-05 msACAGCTCCys SRGGAGCTGTSK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 281 (11.71%) Max nb of predicted sites per peak: 3  (chr6:81864560-81865003) Mean nb of predicted sites per peak: 1.16	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv4_m5	k-mer sig=4.72; evalue=1.9e-05 TkCCGrAACCmG CKGGTTYCGGMA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 497 (20.72%) Max nb of predicted sites per peak: 3  (chr7:14299622-14299761) Mean nb of predicted sites per peak: 1.36	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title morc3chip_thresh5_mergedist200 -i $RSAT/public_html/tmp/www-data/2025/06/03/peak-motifs.2025-06-03.065440_2025-06-03.065440_xAFzzE/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/06/03/peak-motifs.2025-06-03.065440_2025-06-03.065440_xAFzzE

Warning: Not a single pattern was found in file tmp/www-data/2025/06/03/peak-motifs.2025-06-03.065440_2025-06-03.065440_xAFzzE/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/06/03/peak-motifs.2025-06-03.065440_2025-06-03.065440_xAFzzE/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab