; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/04/oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/06/04/oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/06/04/oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/06/04/oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/06/04/oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	96	109	112	154	92	215	213	220	230	218	231	77	65	220	228	217	200	79	192	174	108	124
c	32	23	25	21	22	5	6	10	6	7	3	5	11	12	7	11	15	16	18	16	23	19
g	25	39	22	21	14	13	12	9	9	9	6	14	22	11	7	11	16	20	18	24	30	32
t	118	100	112	75	143	38	40	32	26	37	31	175	173	28	29	32	40	156	43	57	110	96
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m1_rc.png
;
a	80	85	47	168	162	25	20	22	26	163	162	22	27	23	154	96	87	89	85
c	32	19	4	16	11	6	6	5	8	11	6	5	12	8	8	10	19	27	22
g	18	12	8	4	5	6	5	5	9	6	5	9	5	10	12	23	27	22	19
t	88	102	159	30	40	181	187	186	175	38	45	182	174	177	44	89	85	80	92
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m2_rc.png
;
a	100	113	55	183	40	36	208	214	202	207	49	53	203	195	194	117	104
c	24	15	6	16	7	10	5	4	1	5	7	13	7	7	3	19	16
g	19	29	13	5	6	13	5	2	7	9	11	16	8	10	13	22	23
t	103	89	172	42	193	187	28	26	36	25	179	164	28	34	36	88	103
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m3_rc.png
;
a	83	87	27	161	28	22	191	193	193	193	55	187	104	96
c	21	23	11	3	5	8	8	3	3	1	8	3	26	20
g	23	15	8	6	7	4	5	8	5	5	98	8	22	35
t	86	88	167	43	173	179	9	9	12	14	52	15	61	62
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m4_rc.png
;
a	116	107	114	143	96	226	222	227	231	243	229	243	75	64	219	233	224	208	80	194	174	132	136
c	24	26	29	18	23	13	14	7	12	4	6	4	7	10	17	6	6	9	23	20	15	20	21
g	25	33	37	27	28	12	12	16	11	9	5	10	21	27	18	14	13	23	14	26	23	32	32
t	120	119	105	97	138	34	37	35	31	29	45	28	182	184	31	32	42	45	168	45	73	101	96
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m5_rc.png
;
a	79	73	55	157	36	42	168	167	167	171	156	161	39	45	75	140	85	67
c	15	17	10	7	5	6	6	7	0	2	2	3	4	10	15	9	18	31
g	19	20	20	3	10	7	4	9	9	3	4	9	4	13	52	10	22	22
t	79	82	107	25	141	137	14	9	16	16	30	19	145	124	50	33	67	72
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m6_rc.png
;
a	72	71	40	139	28	32	155	169	166	168	152	159	42	71	126	90	79
c	11	25	7	4	8	8	12	4	0	3	2	2	4	9	11	20	27
g	20	12	5	3	7	5	5	3	4	3	5	11	7	62	11	16	18
t	84	79	135	41	144	142	15	11	17	13	28	15	134	45	39	61	63
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m7_rc.png
;
a	27	27	21	11	10	50	50	13	20	8	10	59	57	15	54	12	12	57	59	50	54	17	20	51	59	43	34	35
c	8	9	8	1	8	0	3	4	4	4	4	2	3	3	2	2	1	3	3	0	3	4	4	5	3	2	4	4
g	4	4	2	3	5	4	4	3	0	3	3	1	2	2	3	3	2	4	4	4	4	3	0	8	1	8	9	8
t	35	34	43	59	51	20	17	54	50	59	57	12	12	54	15	57	59	10	8	20	13	50	50	10	11	21	27	27
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m8_rc.png
;
a	6	6	2	14	0	1	0	1	1	2	3	8	3
c	2	2	2	0	0	14	15	14	13	1	3	2	4
g	1	0	0	0	0	0	0	0	0	1	3	0	2
t	6	7	11	1	15	0	0	0	1	11	6	5	6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m9_rc.png
;
a	102	97	15	185	14	14	200	201	27	200	90	81
c	20	15	0	8	4	3	5	3	2	7	20	19
g	19	20	7	2	3	5	3	4	8	0	15	20
t	81	90	200	27	201	200	14	14	185	15	97	102
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m10_rc.png
;
a	46	42	94	0	94	94	0	94	41	36
c	9	11	0	0	0	0	0	0	7	10
g	13	12	0	0	0	0	0	0	7	5
t	26	29	0	94	0	0	94	0	39	43
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m11_rc.png
;
a	28	18	3	1	2	5	6	6	64	22	30
c	11	15	63	0	0	55	55	5	1	12	10
g	8	10	0	1	0	2	1	0	3	15	5
t	24	28	5	69	69	9	9	60	3	22	26
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m12_rc.png
;
a	119	123	124	222	204	219	238	218	225	68	66	206	220	207	176	79	186	173	111	120
c	19	27	29	6	13	10	2	6	4	4	9	15	7	8	16	17	22	11	21	19
g	30	32	45	10	16	11	5	9	12	16	19	14	8	18	20	13	18	19	31	30
t	95	81	65	25	30	23	18	30	22	175	169	28	28	30	51	154	37	60	100	94
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m13_rc.png
;
a	7	4	2	0	1	0	0	14	3	13	7	7
c	0	3	1	0	0	0	0	0	0	0	1	0
g	2	5	9	12	13	14	13	0	0	0	3	1
t	5	2	2	2	0	0	1	0	11	1	3	6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m14_rc.png
;
a	10	10	0	27	0	0	27	27	10	9
c	5	3	0	0	0	0	0	0	3	4
g	3	6	27	0	27	0	0	0	4	4
t	9	8	0	0	0	27	0	0	10	10
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m15_rc.png
;
a	9	13	24	21	3	4	2	1	4	22	5	21	9	12
c	1	3	0	0	1	0	0	0	0	0	4	1	1	1
g	2	6	0	2	19	17	20	22	17	0	1	0	4	4
t	12	2	0	1	1	3	2	1	3	2	14	2	10	7
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m16_rc.png
;
a	84	100	52	162	34	47	190	196	192	188	175	195	58	165	72	64	133	67	87	101
c	13	19	13	4	9	13	7	6	5	8	4	5	9	13	12	14	11	20	28	29
g	24	8	18	4	2	9	6	6	5	5	10	8	9	8	19	15	13	14	27	21
t	104	98	142	55	180	156	22	17	23	24	36	17	149	39	122	132	68	124	83	74
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m17_rc.png
;
a	10	14	0	0	0	41	41	41	17	8
c	7	4	0	0	41	0	0	0	5	6
g	9	10	41	0	0	0	0	0	7	10
t	15	13	0	41	0	0	0	0	12	17
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m18_rc.png
;
a	82	92	72	180	34	48	200	201	199	204	183	192	45	63	97	110	93
c	24	20	19	3	11	11	10	6	3	3	1	4	5	9	28	24	27
g	22	23	28	6	9	5	4	8	7	2	6	9	6	14	30	22	21
t	98	91	107	37	172	162	12	11	17	17	36	21	170	140	71	70	85
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m19_rc.png
;
a	116	121	39	222	18	18	244	250	238	251	101	119	130	121
c	18	26	7	2	7	12	7	4	2	0	22	12	27	23
g	28	27	16	1	3	8	6	4	8	4	44	45	22	38
t	104	92	204	41	238	228	9	8	18	11	99	90	87	84
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m20.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.175931_M3VRsq_pssm_count_matrices_logo_m20_rc.png
;
; Host name	rsat
; Job started	2025-06-04.175946
; Job done	2025-06-04.175952
; Seconds	0.27
;	user	0.27
;	system	0.21
;	cuser	5.34
;	csystem	0.81