; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/04/oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/06/04/oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/06/04/oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/06/04/oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/06/04/oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 5 5 8 11 4 0 0 1 0 1 17 7 7
c 1 3 1 0 0 0 0 0 0 1 0 3 1
g 5 5 6 3 14 17 18 16 18 0 1 5 3
t 7 5 3 4 0 1 0 1 0 16 0 3 7
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m1_rc.png
;
a 126 127 208 219 225 222 103 209 227 230 224 214 210 90 208 133 128
c 29 26 14 4 11 2 8 7 8 5 7 5 9 7 16 22 31
g 28 30 13 10 11 6 13 17 10 8 10 10 12 21 15 33 30
t 79 79 27 29 15 32 138 29 17 19 21 33 31 144 23 74 73
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m2_rc.png
;
a 19 27 27 30 31 16 28 34 37 35 38 34 16 32 32 28 9 5 7 22 5 4 3 3 2 11 24 10 6 10 8 14
c 5 4 1 3 3 1 2 5 1 2 1 3 2 3 3 4 3 4 2 4 2 1 4 3 3 3 3 0 5 6 5 6
g 6 5 6 5 0 3 3 3 3 4 1 2 4 2 4 3 4 3 3 2 3 1 2 1 5 2 1 3 3 1 4 5
t 14 8 10 6 10 24 11 2 3 3 4 5 22 7 5 9 28 32 32 16 34 38 35 37 34 28 16 31 30 27 27 19
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m3_rc.png
;
a 4 3 1 12 0 1 0 0 0 4 2 3 6 4
c 3 2 1 0 12 11 11 12 12 2 8 7 2 6
g 0 2 0 0 0 0 0 0 0 0 1 1 0 0
t 5 5 10 0 0 0 1 0 0 6 1 1 4 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m4_rc.png
;
a 5 6 0 0 0 0 15 0 6 6
c 1 2 15 0 0 0 0 15 2 4
g 2 2 0 0 0 15 0 0 2 0
t 7 5 0 15 15 0 0 0 5 5
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m5_rc.png
;
a 18 13 0 0 0 51 51 51 18 14
c 5 12 0 0 51 0 0 0 8 8
g 7 12 0 0 0 0 0 0 6 7
t 21 14 51 51 0 0 0 0 19 22
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m6_rc.png
;
a 115 119 134 217 213 216 99 222 222 228 236 229 220 223 86 220 133 131
c 35 29 26 10 12 11 11 5 9 11 4 2 5 9 11 16 19 25
g 26 26 33 11 11 11 17 12 10 11 7 11 11 12 19 14 40 34
t 91 93 74 29 31 29 140 28 26 17 20 25 31 23 151 17 75 77
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m7_rc.png
;
a 146 147 221 227 230 237 115 228 247 242 255 259 254 252 256 118 242 151 149
c 33 41 21 21 12 8 16 15 10 6 14 5 4 4 6 9 17 20 27
g 32 29 22 11 18 15 27 12 11 18 10 12 10 12 12 24 20 42 41
t 91 85 38 43 42 42 144 47 34 36 23 26 34 34 28 151 23 89 85
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m8_rc.png
;
a 113 125 189 197 198 99 192 215 216 221 207 212 101 209 203 197 123 95 139 159 144 111 103
c 28 24 13 12 7 13 9 5 8 9 6 5 9 7 10 11 12 18 23 15 23 33 33
g 28 34 13 12 9 15 11 7 8 4 10 9 14 12 13 19 28 30 34 24 30 35 29
t 83 69 37 31 38 125 40 25 20 18 29 26 128 24 26 25 89 109 56 54 55 73 87
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m9_rc.png
;
a 128 148 118 207 113 253 262 262 262 262 88 263 232 222 228 127 131
c 32 30 23 16 26 7 9 9 12 1 10 6 8 16 8 22 23
g 30 26 30 12 19 13 7 3 4 6 13 9 20 15 17 49 37
t 106 92 125 61 138 23 18 22 18 27 185 18 36 43 43 98 105
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/06/04//oligo-analysis_2025-06-04.182330_9um3gD_pssm_count_matrices_logo_m10_rc.png
;
; Host name rsat
; Job started 2025-06-04.182340
; Job done 2025-06-04.182344
; Seconds 0.22
; user 0.22
; system 0.11
; cuser 2.7
; csystem 0.43