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matrix-clustering -v 1 -max_matrices 300 -matrix oct4_peak_motifs_permuted $RSAT/public_html/tmp/www-data/2025/06/17/matrix-clustering_2025-06-17.204213_6yTPo9/matrix-clustering_query_matrices.transfac transfac -hclust_method average -calc sum -title clustering_column-permuted_matrices_discovered_in_oct4_chip-seq -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.4 -quick -rand -radial_tree_only -label_in_tree name -return json,heatmap -o $RSAT/public_html/tmp/www-data/2025/06/17/matrix-clustering_2025-06-17.204213_6yTPo9/matrix-clustering