/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085330_2025-06-19.085330_NC5YGx/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085330_2025-06-19.085330_NC5YGx/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085330_2025-06-19.085330_NC5YGx/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085330_2025-06-19.085330_NC5YGx/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085330_2025-06-19.085330_NC5YGx/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085330_2025-06-19.085330_NC5YGx/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085330_2025-06-19.085330_NC5YGx/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085330_2025-06-19.085330_NC5YGx/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085330_2025-06-19.085330_NC5YGx/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085330_2025-06-19.085330_NC5YGx/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085330_2025-06-19.085330_NC5YGx/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4.tf
		file1	1	12	2
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m4 NAC017/MA1674.2/JASPAR oligos_6-8nt_m4 NAC017:MA1674.2:JASPAR 0.717 0.717 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m4 NAC096/MA2037.1/JASPAR oligos_6-8nt_m4 NAC096:MA2037.1:JASPAR 0.715 0.656 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_6-8nt_m4 NAC045/UN0375.1/JASPAR oligos_6-8nt_m4 NAC045:UN0375.1:JASPAR 0.718 0.564 12 13 11 14 0.7857 0.9167 0.8462 D 1
oligos_6-8nt_m4 NTL8/MA1678.2/JASPAR oligos_6-8nt_m4 NTL8:MA1678.2:JASPAR 0.711 0.559 12 13 11 14 0.7857 0.9167 0.8462 D 1
oligos_6-8nt_m4 NTL8/MA1678.3/JASPAR oligos_6-8nt_m4 NTL8:MA1678.3:JASPAR 0.802 0.535 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_6-8nt_m4 NAC045/MA2048.2/JASPAR oligos_6-8nt_m4 NAC045:MA2048.2:JASPAR 0.801 0.534 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_6-8nt_m4 NAC105/MA2053.2/JASPAR oligos_6-8nt_m4 NAC105:MA2053.2:JASPAR 0.706 0.529 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_6-8nt_m4 NAC050/MA1663.3/JASPAR oligos_6-8nt_m4 NAC050:MA1663.3:JASPAR 0.775 0.517 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_6-8nt_m4 At3g60580.DAP/M0307/AthalianaCistrome oligos_6-8nt_m4 At3g60580.DAP:M0307:AthalianaCistrome 0.743 0.496 12 8 8 12 0.6667 0.6667 1.0000 D 2
oligos_6-8nt_m4 ZAT9/UN0417.1/JASPAR oligos_6-8nt_m4 ZAT9:UN0417.1:JASPAR 0.743 0.495 12 8 8 12 0.6667 0.6667 1.0000 R 2
oligos_6-8nt_m4 NAC062/MA1676.3/JASPAR oligos_6-8nt_m4 NAC062:MA1676.3:JASPAR 0.840 0.490 12 7 7 12 0.5833 0.5833 1.0000 D 3
oligos_6-8nt_m4 NAC096/MA2037.2/JASPAR oligos_6-8nt_m4 NAC096:MA2037.2:JASPAR 0.836 0.487 12 7 7 12 0.5833 0.5833 1.0000 D 3
oligos_6-8nt_m4 NAC028/MA1427.3/JASPAR oligos_6-8nt_m4 NAC028:MA1427.3:JASPAR 0.807 0.471 12 7 7 12 0.5833 0.5833 1.0000 D 3
oligos_6-8nt_m4 NAC057/MA2034.2/JASPAR oligos_6-8nt_m4 NAC057:MA2034.2:JASPAR 0.798 0.465 12 7 7 12 0.5833 0.5833 1.0000 D 3
oligos_6-8nt_m4 NAC017/MA1674.3/JASPAR oligos_6-8nt_m4 NAC017:MA1674.3:JASPAR 0.789 0.460 12 7 7 12 0.5833 0.5833 1.0000 D 3
oligos_6-8nt_m4 ONAC127/UN0429.2/JASPAR oligos_6-8nt_m4 ONAC127:UN0429.2:JASPAR 0.744 0.434 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_6-8nt_m4 ANAC096.DAP/M0645/AthalianaCistrome oligos_6-8nt_m4 ANAC096.DAP:M0645:AthalianaCistrome 0.781 0.434 12 16 10 18 0.5556 0.8333 0.6250 D -6
oligos_6-8nt_m4 NTL8.DAP/M0671/AthalianaCistrome oligos_6-8nt_m4 NTL8.DAP:M0671:AthalianaCistrome 0.777 0.427 12 19 11 20 0.5500 0.9167 0.5789 R -8
oligos_6-8nt_m4 ZAT9/UN0417.2/JASPAR oligos_6-8nt_m4 ZAT9:UN0417.2:JASPAR 0.852 0.426 12 6 6 12 0.5000 0.5000 1.0000 R 4
oligos_6-8nt_m4 MYB98/MA1392.2/JASPAR oligos_6-8nt_m4 MYB98:MA1392.2:JASPAR 0.770 0.411 12 11 8 15 0.5333 0.6667 0.7273 R 4
oligos_6-8nt_m4 MYB52/MYB52/ArabidopsisPBM oligos_6-8nt_m4 MYB52:MYB52:ArabidopsisPBM 0.705 0.403 12 10 8 14 0.5714 0.6667 0.8000 D 4 
 Host name	rsat
 Job started	2025-06-19.085349
 Job done	2025-06-19.085350
 Seconds	1.32
	user	1.32
	system	0.06
	cuser	0.22
;	csystem	0.04