/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title m2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	721
	Sum of sequence lengths      	337168
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	467
	Possible positions           	336447
 Oligonucleotide statistics:
	Total occurrences    	321381
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	336447
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	104	2064
	2	-24	[-479,-460]	-469.5	109	2128
	3	-23	[-459,-440]	-449.5	113	2227
	4	-22	[-439,-420]	-429.5	120	2354
	5	-21	[-419,-400]	-409.5	127	2475
	6	-20	[-399,-380]	-389.5	134	2589
	7	-19	[-379,-360]	-369.5	143	2795
	8	-18	[-359,-340]	-349.5	152	2970
	9	-17	[-339,-320]	-329.5	163	3154
	10	-16	[-319,-300]	-309.5	172	3361
	11	-15	[-299,-280]	-289.5	181	3529
	12	-14	[-279,-260]	-269.5	197	3768
	13	-13	[-259,-240]	-249.5	207	4070
	14	-12	[-239,-220]	-229.5	222	4313
	15	-11	[-219,-200]	-209.5	235	4526
	16	-10	[-199,-180]	-189.5	271	4975
	17	-9	[-179,-160]	-169.5	445	6759
	18	-8	[-159,-140]	-149.5	626	11137
	19	-7	[-139,-120]	-129.5	718	13216
	20	-6	[-119,-100]	-109.5	721	14382
	21	-5	[-99,-80]	-89.5	721	14420
	22	-4	[-79,-60]	-69.5	721	14420
	23	-3	[-59,-40]	-49.5	721	14420
	24	-2	[-39,-20]	-29.5	721	14420
	25	-1	[-19,0]	-9.5	721	14420
	26	0	[1,20]	10.5	721	14420
	27	1	[21,40]	30.5	721	14420
	28	2	[41,60]	50.5	721	14420
	29	3	[61,80]	70.5	721	14420
	30	4	[81,100]	90.5	721	14418
	31	5	[101,120]	110.5	719	14377
	32	6	[121,140]	130.5	718	13038
	33	7	[141,160]	150.5	626	10739
	34	8	[161,180]	170.5	403	6443
	35	9	[181,200]	190.5	262	4904
	36	10	[201,220]	210.5	231	4503
	37	11	[221,240]	230.5	220	4285
	38	12	[241,260]	250.5	207	4047
	39	13	[261,280]	270.5	195	3737
	40	14	[281,300]	290.5	180	3513
	41	15	[301,320]	310.5	172	3339
	42	16	[321,340]	330.5	161	3131
	43	17	[341,360]	350.5	151	2955
	44	18	[361,380]	370.5	143	2777
	45	19	[381,400]	390.5	133	2575
	46	20	[401,420]	410.5	126	2462
	47	21	[421,440]	430.5	119	2340
	48	22	[441,460]	450.5	113	2218
	49	23	[461,480]	470.5	108	2117
	50	24	[481,500]	490.5	104	1957

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
ta ta 11936 813.1 49 0.0e+00 0 300 1 75 49 55 55 65 78 65 66 84 76 84 108 110 104 118 143 292 472 398 349 342 467 677 793 742 539 499 470 550 619 562 407 280 195 177 179 175 158 138 111 78 97 87 127 175 124 102 89 65 66
tt tt 17645 658.2 49 0.0e+00 0 300 2 83 82 68 73 113 104 83 98 118 124 114 142 142 158 156 170 307 578 652 638 768 831 982 967 859 811 881 890 785 786 755 678 463 247 260 241 198 221 236 175 166 180 151 193 189 182 163 151 108 125
gg gg 23568 606.2 49 0.0e+00 0 300 3 191 169 161 195 174 185 244 244 213 253 265 295 310 354 373 382 525 792 1145 1225 1097 903 803 789 858 859 857 913 939 902 1010 1056 870 507 338 356 280 263 281 328 332 264 218 132 100 130 128 121 130 109
at at 15099 398.7 49 2.6e-56 4.1e-55 54.38 4 84 81 85 88 77 94 94 94 125 112 122 132 153 156 135 175 320 599 591 720 723 678 762 839 767 586 574 545 628 702 676 512 415 269 216 180 204 212 201 127 122 128 131 147 188 137 108 105 81 99
cc cc 23061 364.7 49 7.8e-50 1.3e-48 47.90 5 206 164 162 197 214 182 213 231 246 270 246 292 325 331 356 379 411 595 789 994 1115 1220 987 868 872 963 1047 1013 1032 881 826 876 742 467 307 306 298 221 231 211 224 243 246 229 164 129 127 122 158 133
aa aa 16766 361.3 49 3.4e-49 5.5e-48 47.26 6 61 80 86 97 90 101 85 113 120 105 136 144 151 172 174 192 354 700 712 695 652 682 741 875 855 807 769 704 700 723 778 612 486 340 250 217 201 240 204 181 159 125 136 143 159 141 138 135 126 119
ct ct 20382 340.7 49 2.6e-45 4.1e-44 43.39 7 98 132 115 106 135 133 148 134 152 181 180 199 223 213 242 254 341 554 661 744 750 899 970 917 947 1005 1022 1021 999 948 915 823 645 377 297 265 252 250 212 223 181 190 155 191 167 158 190 168 165 135
cg cg 22789 301.4 49 5.1e-38 8.2e-37 36.08 8 145 144 152 163 162 156 205 198 197 192 209 231 255 296 309 333 384 607 892 1007 1036 893 816 766 871 987 1049 1131 1071 988 1014 992 908 511 351 313 291 246 250 252 268 247 233 177 154 138 149 153 146 151
gc gc 32320 267.9 49 6.3e-32 1e-30 30.00 9 186 205 202 204 212 216 275 266 259 318 332 330 387 413 436 472 534 937 1264 1457 1470 1325 1212 1185 1228 1401 1406 1549 1496 1462 1481 1393 1200 681 503 441 437 351 339 367 361 339 307 258 202 203 211 198 212 197
tc tc 17063 226.5 49 1.2e-24 2e-23 22.71 10 81 99 123 115 125 118 120 130 136 147 123 172 178 186 192 190 282 481 597 683 786 803 782 734 735 781 860 842 797 755 766 643 530 318 219 220 187 199 203 160 151 162 148 151 166 141 152 147 123 124
ga ga 16392 179.2 49 9.8e-17 1.6e-15 14.80 11 102 93 94 116 99 100 97 125 127 132 158 151 146 197 198 246 346 584 695 812 688 652 634 665 680 762 672 682 661 689 737 721 625 342 257 209 227 235 189 171 179 130 157 124 98 114 115 129 123 107
ac ac 18591 158.3 49 2.0e-13 3.1e-12 11.51 12 110 101 110 107 128 148 129 142 163 142 185 196 216 232 247 277 398 601 681 699 724 785 887 925 938 903 862 796 794 815 738 665 582 321 265 238 237 221 203 186 175 153 171 169 158 166 142 130 131 99
ag ag 19441 139.9 49 1.1e-10 1.8e-09 8.75 13 117 98 116 136 117 126 129 139 144 185 196 183 198 244 235 298 415 705 810 849 728 763 777 842 832 888 809 821 826 903 918 835 685 388 286 296 276 243 209 206 199 160 173 148 131 150 127 138 140 104
gt gt 17516 91.2 49 2.4e-04 0.0039 2.41 14 105 109 120 110 139 142 144 162 164 135 143 205 226 205 242 266 378 671 737 663 700 751 767 761 791 713 756 731 763 765 761 678 509 333 262 250 239 238 178 192 178 176 157 147 133 141 115 90 86 89
ca ca 24765 81.0 49 2.7e-03 0.044 1.36 15 128 145 161 157 161 190 177 198 221 230 250 258 301 327 319 355 478 828 1007 1080 1139 1133 1137 1138 1077 1094 1074 1017 1027 1115 1039 881 764 448 338 330 322 281 279 237 237 219 226 215 206 224 151 158 156 132
tg tg 24047 73.8 49 1.3e-02 0.2 0.70 16 132 169 137 141 169 169 193 209 207 208 245 262 303 282 329 354 484 877 1007 1092 1046 1066 1011 1008 1020 983 978 1012 1024 1036 1053 968 765 471 368 303 332 329 255 270 250 238 204 205 165 155 162 128 138 135 
 Host name	rsat
 Job started	2025-06-19.085528
 Job done	2025-06-19.085530
 Seconds	1.85
	user	1.85
	system	0
	cuser	0.01
;	csystem	0