/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.085523_2025-06-19.085523_UdMRwA/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4.tf
		file1	1	10	698
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m4 AT3G49930/UN0355.1/JASPAR oligos_6-8nt_m4 AT3G49930:UN0355.1:JASPAR 0.747 0.679 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_6-8nt_m4 MYB3/M1319_1.02/CISBP oligos_6-8nt_m4 MYB3:M1319_1.02:CISBP 0.702 0.638 10 11 10 11 0.9091 1.0000 0.9091 R 0
oligos_6-8nt_m4 MYB3/MA1038.1/JASPAR oligos_6-8nt_m4 MYB3:MA1038.1:JASPAR 0.702 0.638 10 11 10 11 0.9091 1.0000 0.9091 R 0
oligos_6-8nt_m4 Zm00001d018571/MA1822.2/JASPAR oligos_6-8nt_m4 Zm00001d018571:MA1822.2:JASPAR 0.777 0.622 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6-8nt_m4 TFLG2-Zm00001d042777/MA1835.2/JASPAR oligos_6-8nt_m4 TFLG2-Zm00001d042777:MA1835.2:JASPAR 0.766 0.613 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6-8nt_m4 Zm00001d018571/MA1822.1/JASPAR oligos_6-8nt_m4 Zm00001d018571:MA1822.1:JASPAR 0.768 0.591 10 13 10 13 0.7692 1.0000 0.7692 D -2
oligos_6-8nt_m4 TFLG2-Zm00001d042777/MA1835.1/JASPAR oligos_6-8nt_m4 TFLG2-Zm00001d042777:MA1835.1:JASPAR 0.750 0.577 10 13 10 13 0.7692 1.0000 0.7692 D -2
oligos_6-8nt_m4 TRANSCRIPTION/1qn7_B/3D-footprint oligos_6-8nt_m4 TRANSCRIPTION:1qn7_B:3D-footprint 0.716 0.573 10 8 8 10 0.8000 0.8000 1.0000 R 2
oligos_6-8nt_m4 MYB3/MA1038.2/JASPAR oligos_6-8nt_m4 MYB3:MA1038.2:JASPAR 0.707 0.565 10 8 8 10 0.8000 0.8000 1.0000 R 2
oligos_6-8nt_m4 LOC_Os09g31400/M0683_1.02/CISBP oligos_6-8nt_m4 LOC_Os09g31400:M0683_1.02:CISBP 0.716 0.537 10 11 9 12 0.7500 0.9000 0.8182 R -2
oligos_6-8nt_m4 AT3G49930/UN0355.2/JASPAR oligos_6-8nt_m4 AT3G49930:UN0355.2:JASPAR 0.764 0.535 10 7 7 10 0.7000 0.7000 1.0000 D 2
oligos_6-8nt_m4 OsEIL3/MA2351.1/JASPAR oligos_6-8nt_m4 OsEIL3:MA2351.1:JASPAR 0.838 0.533 10 8 7 11 0.6364 0.7000 0.8750 D -1
oligos_6-8nt_m4 TEIL/TEIL/Athamap oligos_6-8nt_m4 TEIL:TEIL:Athamap 0.809 0.515 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6-8nt_m4 Q9ZWK1_TOBAC/M2889_1.02/CISBP oligos_6-8nt_m4 Q9ZWK1_TOBAC:M2889_1.02:CISBP 0.809 0.515 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6-8nt_m4 CsMYB60-dreme/EEAD0150/EEADannot oligos_6-8nt_m4 CsMYB60-dreme:EEAD0150:EEADannot 0.725 0.508 10 7 7 10 0.7000 0.7000 1.0000 D 3
oligos_6-8nt_m4 bZIP65/EEAD0071/EEADannot oligos_6-8nt_m4 bZIP65:EEAD0071:EEADannot 0.832 0.499 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6-8nt_m4 NAC062/MA1676.3/JASPAR oligos_6-8nt_m4 NAC062:MA1676.3:JASPAR 0.707 0.495 10 7 7 10 0.7000 0.7000 1.0000 R 1
oligos_6-8nt_m4 ARR18/MA0948.2/JASPAR oligos_6-8nt_m4 ARR18:MA0948.2:JASPAR 0.705 0.493 10 7 7 10 0.7000 0.7000 1.0000 D 3
oligos_6-8nt_m4 EIL3/MA1751.2/JASPAR oligos_6-8nt_m4 EIL3:MA1751.2:JASPAR 0.774 0.493 10 8 7 11 0.6364 0.7000 0.8750 D -1
oligos_6-8nt_m4 ZFHD10-3/EEAD0065/EEADannot oligos_6-8nt_m4 ZFHD10-3:EEAD0065:EEADannot 0.736 0.491 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6-8nt_m4 MYB92/MA1780.2/JASPAR oligos_6-8nt_m4 MYB92:MA1780.2:JASPAR 0.700 0.490 10 7 7 10 0.7000 0.7000 1.0000 D 3
oligos_6-8nt_m4 PRH/M1167_1.02/CISBP oligos_6-8nt_m4 PRH:M1167_1.02:CISBP 0.743 0.473 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6-8nt_m4 EIL1/M0681_1.02/CISBP oligos_6-8nt_m4 EIL1:M0681_1.02:CISBP 0.765 0.446 10 9 7 12 0.5833 0.7000 0.7778 R -2
oligos_6-8nt_m4 GTAC/EEAD0169/EEADannot oligos_6-8nt_m4 GTAC:EEAD0169:EEADannot 0.855 0.427 10 5 5 10 0.5000 0.5000 1.0000 R 0
oligos_6-8nt_m4 SPL4/MA1058.2/JASPAR oligos_6-8nt_m4 SPL4:MA1058.2:JASPAR 0.823 0.412 10 5 5 10 0.5000 0.5000 1.0000 D 1
oligos_6-8nt_m4 POPTR/MA0955.1/JASPAR oligos_6-8nt_m4 POPTR:MA0955.1:JASPAR 0.747 0.408 10 7 6 11 0.5455 0.6000 0.8571 R -1
oligos_6-8nt_m4 B9GPL8_POPTR/M1568_1.02/CISBP oligos_6-8nt_m4 B9GPL8_POPTR:M1568_1.02:CISBP 0.746 0.407 10 7 6 11 0.5455 0.6000 0.8571 R -1
oligos_6-8nt_m4 SPL13A/MA1321.2/JASPAR oligos_6-8nt_m4 SPL13A:MA1321.2:JASPAR 0.810 0.405 10 8 6 12 0.5000 0.6000 0.7500 R -2
oligos_6-8nt_m4 MYB27/MA1292.2/JASPAR oligos_6-8nt_m4 MYB27:MA1292.2:JASPAR 0.707 0.404 10 12 8 14 0.5714 0.8000 0.6667 R 2 
 Host name	rsat
 Job started	2025-06-19.085553
 Job done	2025-06-19.085554
 Seconds	1.36
	user	1.36
	system	0.04
	cuser	0.21
;	csystem	0.03