position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title m4 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 220 Sum of sequence lengths 66184 Min sequence length 0 Max sequence length 999 Average sequence length 300 Possible positions 66184 Oligonucleotide statistics: Total occurrences 64764 Position interval parameters: Position interval 20 Number of windows 50 Total positions 66184 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 28 554 2 -24 [-479,-460] -469.5 29 568 3 -23 [-459,-440] -449.5 31 610 4 -22 [-439,-420] -429.5 33 650 5 -21 [-419,-400] -409.5 34 676 6 -20 [-399,-380] -389.5 34 680 7 -19 [-379,-360] -369.5 37 726 8 -18 [-359,-340] -349.5 38 745 9 -17 [-339,-320] -329.5 39 766 10 -16 [-319,-300] -309.5 40 794 11 -15 [-299,-280] -289.5 42 824 12 -14 [-279,-260] -269.5 42 840 13 -13 [-259,-240] -249.5 44 852 14 -12 [-239,-220] -229.5 48 935 15 -11 [-219,-200] -209.5 52 1018 16 -10 [-199,-180] -189.5 59 1108 17 -9 [-179,-160] -169.5 62 1235 18 -8 [-159,-140] -149.5 64 1276 19 -7 [-139,-120] -129.5 69 1334 20 -6 [-119,-100] -109.5 73 1440 21 -5 [-99,-80] -89.5 81 1564 22 -4 [-79,-60] -69.5 121 1997 23 -3 [-59,-40] -49.5 199 3435 24 -2 [-39,-20] -29.5 220 4165 25 -1 [-19,0] -9.5 220 4400 26 0 [1,20] 10.5 220 4400 27 1 [21,40] 30.5 220 4144 28 2 [41,60] 50.5 199 3377 29 3 [61,80] 70.5 118 1956 30 4 [81,100] 90.5 81 1555 31 5 [101,120] 110.5 73 1436 32 6 [121,140] 130.5 69 1332 33 7 [141,160] 150.5 64 1274 34 8 [161,180] 170.5 62 1234 35 9 [181,200] 190.5 59 1102 36 10 [201,220] 210.5 52 1015 37 11 [221,240] 230.5 48 930 38 12 [241,260] 250.5 44 848 39 13 [261,280] 270.5 42 840 40 14 [281,300] 290.5 42 824 41 15 [301,320] 310.5 40 793 42 16 [321,340] 330.5 39 764 43 17 [341,360] 350.5 38 744 44 18 [361,380] 370.5 37 722 45 19 [381,400] 390.5 34 680 46 20 [401,420] 410.5 34 674 47 21 [421,440] 430.5 33 650 48 22 [441,460] 450.5 31 607 49 23 [461,480] 470.5 29 566 50 24 [481,500] 490.5 28 525 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 13438 | 136.9 | 49 | 3.0e-10 | 1.2e-09 | 8.92 | 1 | 82 | 105 | 92 | 104 | 118 | 119 | 124 | 134 | 150 | 144 | 150 | 152 | 178 | 191 | 206 | 214 | 226 | 252 | 233 | 259 | 282 | 430 | 753 | 894 | 924 | 934 | 956 | 785 | 398 | 300 | 313 | 257 | 250 | 241 | 236 | 217 | 176 | 181 | 144 | 163 | 186 | 157 | 153 | 147 | 109 | 125 | 113 | 116 | 120 | 145 |
| g | g | 18589 | 122.4 | 49 | 3.3e-08 | 1.3e-07 | 6.88 | 2 | 140 | 147 | 175 | 158 | 170 | 173 | 190 | 198 | 198 | 222 | 206 | 213 | 252 | 261 | 296 | 296 | 319 | 358 | 393 | 407 | 460 | 556 | 961 | 1176 | 1281 | 1205 | 1092 | 838 | 562 | 441 | 452 | 412 | 373 | 345 | 312 | 275 | 271 | 247 | 281 | 244 | 217 | 232 | 234 | 240 | 251 | 236 | 197 | 184 | 131 | 111 |
| c | c | 18998 | 111.0 | 49 | 1.0e-06 | 4.2e-06 | 5.38 | 3 | 138 | 139 | 160 | 204 | 189 | 191 | 225 | 240 | 261 | 255 | 281 | 240 | 249 | 290 | 313 | 347 | 403 | 393 | 389 | 440 | 447 | 525 | 844 | 1091 | 1217 | 1291 | 1190 | 974 | 592 | 462 | 402 | 373 | 347 | 379 | 314 | 290 | 275 | 226 | 248 | 248 | 211 | 199 | 195 | 181 | 198 | 187 | 215 | 193 | 185 | 152 |
| a | a | 13739 | 103.9 | 49 | 8.1e-06 | 3.2e-05 | 4.49 | 4 | 102 | 77 | 100 | 124 | 134 | 141 | 140 | 147 | 137 | 153 | 156 | 176 | 149 | 193 | 203 | 248 | 267 | 255 | 264 | 281 | 303 | 426 | 819 | 984 | 945 | 912 | 879 | 761 | 380 | 321 | 252 | 253 | 282 | 249 | 220 | 213 | 194 | 163 | 162 | 169 | 179 | 176 | 162 | 154 | 122 | 126 | 125 | 114 | 130 | 117 |
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