/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title m4 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	220
	Sum of sequence lengths      	66184
	Min sequence length          	0
	Max sequence length          	999
	Average sequence length      	300
	Possible positions           	65964
 Oligonucleotide statistics:
	Total occurrences    	64523
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	65964
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	28	554
	2	-24	[-479,-460]	-469.5	29	568
	3	-23	[-459,-440]	-449.5	31	610
	4	-22	[-439,-420]	-429.5	33	650
	5	-21	[-419,-400]	-409.5	34	676
	6	-20	[-399,-380]	-389.5	34	680
	7	-19	[-379,-360]	-369.5	37	726
	8	-18	[-359,-340]	-349.5	38	745
	9	-17	[-339,-320]	-329.5	39	766
	10	-16	[-319,-300]	-309.5	40	794
	11	-15	[-299,-280]	-289.5	42	824
	12	-14	[-279,-260]	-269.5	42	840
	13	-13	[-259,-240]	-249.5	44	852
	14	-12	[-239,-220]	-229.5	48	935
	15	-11	[-219,-200]	-209.5	52	1018
	16	-10	[-199,-180]	-189.5	59	1108
	17	-9	[-179,-160]	-169.5	62	1235
	18	-8	[-159,-140]	-149.5	64	1276
	19	-7	[-139,-120]	-129.5	69	1334
	20	-6	[-119,-100]	-109.5	73	1440
	21	-5	[-99,-80]	-89.5	81	1564
	22	-4	[-79,-60]	-69.5	121	1997
	23	-3	[-59,-40]	-49.5	199	3435
	24	-2	[-39,-20]	-29.5	220	4165
	25	-1	[-19,0]	-9.5	220	4400
	26	0	[1,20]	10.5	220	4400
	27	1	[21,40]	30.5	220	4123
	28	2	[41,60]	50.5	199	3296
	29	3	[61,80]	70.5	118	1919
	30	4	[81,100]	90.5	81	1547
	31	5	[101,120]	110.5	73	1432
	32	6	[121,140]	130.5	69	1327
	33	7	[141,160]	150.5	64	1272
	34	8	[161,180]	170.5	62	1231
	35	9	[181,200]	190.5	59	1095
	36	10	[201,220]	210.5	52	1011
	37	11	[221,240]	230.5	48	926
	38	12	[241,260]	250.5	44	846
	39	13	[261,280]	270.5	42	840
	40	14	[281,300]	290.5	42	822
	41	15	[301,320]	310.5	40	792
	42	16	[321,340]	330.5	39	763
	43	17	[341,360]	350.5	38	743
	44	18	[361,380]	370.5	37	719
	45	19	[381,400]	390.5	34	680
	46	20	[401,420]	410.5	34	673
	47	21	[421,440]	430.5	33	648
	48	22	[441,460]	450.5	31	605
	49	23	[461,480]	470.5	29	565
	50	24	[481,500]	490.5	28	497

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
cc cc 5443 197.0 49 1.2e-19 1.9e-18 17.71 1 33 39 38 71 50 52 78 76 88 77 114 74 70 84 101 102 135 118 118 153 124 139 204 270 323 354 348 282 179 155 95 98 97 118 94 73 87 62 73 70 53 53 44 39 55 57 69 62 65 30
gg gg 5261 174.6 49 5.5e-16 8.8e-15 14.06 2 35 46 52 49 34 53 64 52 62 74 55 62 66 82 88 77 69 90 117 112 135 157 261 330 373 329 275 223 158 153 146 111 107 89 96 64 73 69 96 63 53 79 74 79 91 88 51 58 27 14
tt tt 3077 147.3 49 9.1e-12 1.5e-10 9.83 3 13 25 17 21 28 26 30 27 36 23 23 31 41 38 35 41 41 60 48 47 59 114 182 230 222 233 264 192 72 70 80 51 49 57 62 38 34 41 26 37 46 32 31 24 23 31 29 27 34 36
ta ta 2034 123.5 49 2.3e-08 3.6e-07 6.44 4 13 9 12 16 16 21 17 17 23 19 26 26 23 37 40 39 42 33 24 39 35 78 141 134 113 107 142 151 72 47 32 37 38 36 35 30 26 31 22 21 32 30 25 27 11 14 10 16 20 29
aa aa 3104 122.3 49 3.4e-08 5.4e-07 6.27 5 23 13 21 26 26 32 32 31 26 31 32 42 30 33 41 48 55 46 63 54 60 93 219 278 232 230 198 181 79 73 50 50 66 61 48 43 41 34 36 44 39 39 38 27 19 26 24 19 30 22
at at 2934 111.6 49 8.8e-07 1.4e-05 4.85 6 14 19 12 20 24 23 29 26 32 34 37 32 23 43 49 50 53 47 36 45 63 92 182 193 240 210 219 176 78 64 44 44 68 53 45 49 46 37 30 25 47 37 32 39 22 25 30 35 34 27
ga ga 3325 69.8 49 2.7e-02 0.43 0.37 7 25 24 20 26 30 26 28 37 27 25 36 39 34 44 38 47 71 61 73 68 90 108 203 255 241 216 196 151 95 77 64 80 75 56 46 49 49 38 46 43 39 42 42 49 38 39 42 31 26 20
ct ct 3797 64.6 49 6.7e-02 1.1 -0.03 8 27 30 32 37 30 31 37 47 52 57 37 57 51 52 53 67 72 71 70 68 94 100 169 254 241 276 239 213 132 101 94 87 66 73 66 65 47 38 49 53 45 41 51 39 27 32 29 24 31 43
ag ag 3909 60.0 49 1.4e-01 2.2 -0.33 9 32 20 35 38 41 45 34 44 28 43 35 51 52 49 50 73 84 85 85 84 100 118 228 287 254 235 235 173 100 83 84 83 74 64 72 63 61 53 52 47 53 60 56 49 45 44 34 30 31 33
tc tc 3382 59.7 49 1.4e-01 2.2 -0.35 10 22 29 21 31 33 36 35 43 42 44 46 41 38 62 45 55 68 69 66 61 80 87 168 224 235 256 241 178 97 70 82 51 60 53 54 61 41 48 32 34 45 41 32 32 27 27 30 33 36 40
gc gc 6427 59.0 49 1.5e-01 2.5 -0.39 11 52 49 67 61 67 60 69 73 80 88 72 73 96 77 106 116 118 136 120 135 158 182 283 379 444 441 392 273 199 141 151 147 123 141 107 103 99 79 98 82 81 61 79 71 84 77 73 67 55 42
cg cg 4496 57.1 49 2.0e-01 3.2 -0.50 12 40 41 42 37 49 48 48 54 57 48 61 46 64 75 67 70 90 95 95 99 110 138 217 251 311 295 261 211 137 89 106 103 87 84 67 62 64 68 66 61 44 40 45 53 63 49 66 55 40 27
gt gt 3552 52.9 49 3.3e-01 5.2 -0.72 13 28 28 36 22 39 34 29 36 29 35 43 39 56 58 64 56 61 69 83 91 77 109 214 212 223 219 227 185 108 70 89 74 68 57 63 58 50 60 41 55 44 50 39 41 38 32 31 28 23 31
tg tg 4871 51.2 49 3.9e-01 6.2 -0.79 14 33 42 42 36 41 36 42 47 49 58 55 54 76 54 86 79 75 90 95 112 107 151 262 306 353 338 301 234 148 112 119 117 102 95 81 86 72 61 64 70 63 54 65 62 48 53 44 39 30 32
ca ca 5210 38.7 49 8.6e-01 14 -1.14 15 38 29 48 59 60 59 62 63 64 73 68 63 64 79 92 108 106 109 105 120 119 148 254 316 341 366 338 254 133 117 105 85 97 103 87 90 77 57 60 64 68 65 54 50 53 48 51 51 49 41
ac ac 3701 37.6 49 8.8e-01 14 -1.15 16 32 25 32 40 42 41 45 46 51 45 52 50 44 68 63 76 75 77 80 97 80 123 190 226 219 237 220 200 107 94 72 72 72 71 52 57 44 38 44 53 40 39 36 38 36 31 35 30 34 30 
 Host name	rsat
 Job started	2025-06-19.091819
 Job done	2025-06-19.091820
 Seconds	0.46
	user	0.46
	system	0.01
	cuser	0
;	csystem	0