/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1.tf
		file1	1	11	125
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m1 P/P/Athamap oligos_6-8nt_m1 P:P:Athamap 0.877 0.717 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_6-8nt_m1 MYBP_MAIZE/M2851_1.02/CISBP oligos_6-8nt_m1 MYBP_MAIZE:M2851_1.02:CISBP 0.876 0.717 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_6-8nt_m1 RAX3/MA0576.2/JASPAR oligos_6-8nt_m1 RAX3:MA0576.2:JASPAR 0.703 0.645 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_6-8nt_m1 ODO1motif1B/EEAD0088/EEADannot oligos_6-8nt_m1 ODO1motif1B:EEAD0088:EEADannot 0.784 0.642 11 9 9 11 0.8182 0.8182 1.0000 D 0
oligos_6-8nt_m1 AtMYB93_II/AtMYB93_II/AthaMYB oligos_6-8nt_m1 AtMYB93_II:AtMYB93_II:AthaMYB 0.870 0.632 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_6-8nt_m1 XM_002876896.1/M1282_1.02/CISBP oligos_6-8nt_m1 XM_002876896.1:M1282_1.02:CISBP 0.736 0.622 11 13 11 13 0.8462 1.0000 0.8462 D 0
oligos_6-8nt_m1 MYB83/MA1779.1/JASPAR oligos_6-8nt_m1 MYB83:MA1779.1:JASPAR 0.747 0.622 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6-8nt_m1 MYB83.DAP/M0565/AthalianaCistrome oligos_6-8nt_m1 MYB83.DAP:M0565:AthalianaCistrome 0.747 0.622 11 11 10 12 0.8333 0.9091 0.9091 R -1
oligos_6-8nt_m1 MYB13/MA2041.2/JASPAR oligos_6-8nt_m1 MYB13:MA2041.2:JASPAR 0.817 0.613 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_6-8nt_m1 AtMYB-84/AtMYB84/Athamap oligos_6-8nt_m1 AtMYB-84:AtMYB84:Athamap 0.703 0.595 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_6-8nt_m1 MYB63/MA2024.2/JASPAR oligos_6-8nt_m1 MYB63:MA2024.2:JASPAR 0.704 0.587 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6-8nt_m1 MYB13/EEAD0089/EEADannot oligos_6-8nt_m1 MYB13:EEAD0089:EEADannot 0.745 0.585 11 14 11 14 0.7857 1.0000 0.7857 D -3
oligos_6-8nt_m1 MYB14/EEAD0090/EEADannot oligos_6-8nt_m1 MYB14:EEAD0090:EEADannot 0.745 0.585 11 14 11 14 0.7857 1.0000 0.7857 D -3
oligos_6-8nt_m1 MYB58.DAP/M0523/AthalianaCistrome oligos_6-8nt_m1 MYB58.DAP:M0523:AthalianaCistrome 0.773 0.567 11 15 11 15 0.7333 1.0000 0.7333 R -4
oligos_6-8nt_m1 GAMYB/GAMYB/Athamap oligos_6-8nt_m1 GAMYB:GAMYB:Athamap 0.778 0.566 11 8 8 11 0.7273 0.7273 1.0000 D 3
oligos_6-8nt_m1 MYB61/MA1775.2/JASPAR oligos_6-8nt_m1 MYB61:MA1775.2:JASPAR 0.777 0.565 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6-8nt_m1 MYB83/MA1779.2/JASPAR oligos_6-8nt_m1 MYB83:MA1779.2:JASPAR 0.776 0.564 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6-8nt_m1 MYB13.DAP/M0534/AthalianaCistrome oligos_6-8nt_m1 MYB13.DAP:M0534:AthalianaCistrome 0.768 0.563 11 15 11 15 0.7333 1.0000 0.7333 R -2
oligos_6-8nt_m1 MYB58/MA2042.2/JASPAR oligos_6-8nt_m1 MYB58:MA2042.2:JASPAR 0.844 0.562 11 9 8 12 0.6667 0.7273 0.8889 D -1
oligos_6-8nt_m1 MYB15/EEAD0091/EEADannot oligos_6-8nt_m1 MYB15:EEAD0091:EEADannot 0.764 0.561 11 15 11 15 0.7333 1.0000 0.7333 D -3
oligos_6-8nt_m1 MYB4/MA1039.1/JASPAR oligos_6-8nt_m1 MYB4:MA1039.1:JASPAR 0.765 0.556 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_6-8nt_m1 ATMYB4/M1335_1.02/CISBP oligos_6-8nt_m1 ATMYB4:M1335_1.02:CISBP 0.762 0.554 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_6-8nt_m1 ATY13.ampDAP/M0537/AthalianaCistrome oligos_6-8nt_m1 ATY13.ampDAP:M0537:AthalianaCistrome 0.753 0.552 11 15 11 15 0.7333 1.0000 0.7333 D -4
oligos_6-8nt_m1 MYB111/MYB111_2/ArabidopsisPBM oligos_6-8nt_m1 MYB111:MYB111_2:ArabidopsisPBM 0.734 0.550 11 10 9 12 0.7500 0.8182 0.9000 R -1
oligos_6-8nt_m1 ATMYB13/UN0358.1/JASPAR oligos_6-8nt_m1 ATMYB13:UN0358.1:JASPAR 0.798 0.548 11 16 11 16 0.6875 1.0000 0.6875 D -5
oligos_6-8nt_m1 MYB83.ampDAP/M0500/AthalianaCistrome oligos_6-8nt_m1 MYB83.ampDAP:M0500:AthalianaCistrome 0.745 0.547 11 15 11 15 0.7333 1.0000 0.7333 R -1
oligos_6-8nt_m1 MYB30.DAP/M0549/AthalianaCistrome oligos_6-8nt_m1 MYB30.DAP:M0549:AthalianaCistrome 0.736 0.540 11 15 11 15 0.7333 1.0000 0.7333 D -1
oligos_6-8nt_m1 MYB30/MA1768.1/JASPAR oligos_6-8nt_m1 MYB30:MA1768.1:JASPAR 0.736 0.540 11 15 11 15 0.7333 1.0000 0.7333 D -1
oligos_6-8nt_m1 MYB10/MA1762.2/JASPAR oligos_6-8nt_m1 MYB10:MA1762.2:JASPAR 0.718 0.538 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_6-8nt_m1 Glyma11g37390.1/M1292_1.02/CISBP oligos_6-8nt_m1 Glyma11g37390.1:M1292_1.02:CISBP 0.715 0.536 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_6-8nt_m1 MYB60/MA1774.2/JASPAR oligos_6-8nt_m1 MYB60:MA1774.2:JASPAR 0.714 0.536 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_6-8nt_m1 MYB30.ampDAP/M0539/AthalianaCistrome oligos_6-8nt_m1 MYB30.ampDAP:M0539:AthalianaCistrome 0.730 0.536 11 15 11 15 0.7333 1.0000 0.7333 D -4
oligos_6-8nt_m1 ATY13.DAP/M0496/AthalianaCistrome oligos_6-8nt_m1 ATY13.DAP:M0496:AthalianaCistrome 0.729 0.534 11 15 11 15 0.7333 1.0000 0.7333 D -4
oligos_6-8nt_m1 ATMYB31/MA1738.1/JASPAR oligos_6-8nt_m1 ATMYB31:MA1738.1:JASPAR 0.729 0.534 11 15 11 15 0.7333 1.0000 0.7333 D -4
oligos_6-8nt_m1 AtMYB76_II/AtMYB76_II/AthaMYB oligos_6-8nt_m1 AtMYB76_II:AtMYB76_II:AthaMYB 0.732 0.532 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_6-8nt_m1 MYB58/UN0367.1/JASPAR oligos_6-8nt_m1 MYB58:UN0367.1:JASPAR 0.821 0.531 11 17 11 17 0.6471 1.0000 0.6471 D -5
oligos_6-8nt_m1 AtMYB111_II/AtMYB111_II/AthaMYB oligos_6-8nt_m1 AtMYB111_II:AtMYB111_II:AthaMYB 0.730 0.531 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_6-8nt_m1 cassava13991.valid.m1/M1291_1.02/CISBP oligos_6-8nt_m1 cassava13991.valid.m1:M1291_1.02:CISBP 0.704 0.528 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_6-8nt_m1 MYB107/MA2007.2/JASPAR oligos_6-8nt_m1 MYB107:MA2007.2:JASPAR 0.725 0.527 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6-8nt_m1 Gam1/MA0034.2/JASPAR oligos_6-8nt_m1 Gam1:MA0034.2:JASPAR 0.721 0.524 11 8 8 11 0.7273 0.7273 1.0000 D 3
oligos_6-8nt_m1 MYB61.DAP/M0531/AthalianaCistrome oligos_6-8nt_m1 MYB61.DAP:M0531:AthalianaCistrome 0.710 0.521 11 15 11 15 0.7333 1.0000 0.7333 D -2
oligos_6-8nt_m1 MYB61/MA1775.1/JASPAR oligos_6-8nt_m1 MYB61:MA1775.1:JASPAR 0.723 0.516 11 13 10 14 0.7143 0.9091 0.7692 D -3
oligos_6-8nt_m1 MYB61.ampDAP/M0499/AthalianaCistrome oligos_6-8nt_m1 MYB61.ampDAP:M0499:AthalianaCistrome 0.723 0.516 11 13 10 14 0.7143 0.9091 0.7692 D -3
oligos_6-8nt_m1 AtMYB63_II/AtMYB63_II/AthaMYB oligos_6-8nt_m1 AtMYB63_II:AtMYB63_II:AthaMYB 0.710 0.516 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_6-8nt_m1 AtMYB74_II/AtMYB74_II/AthaMYB oligos_6-8nt_m1 AtMYB74_II:AtMYB74_II:AthaMYB 0.706 0.513 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_6-8nt_m1 AtMYB20_II/AtMYB20_II/AthaMYB oligos_6-8nt_m1 AtMYB20_II:AtMYB20_II:AthaMYB 0.705 0.513 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_6-8nt_m1 MYB55/MA1041.1/JASPAR oligos_6-8nt_m1 MYB55:MA1041.1:JASPAR 0.705 0.513 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_6-8nt_m1 AT4G26030/UN0846.1/JASPAR oligos_6-8nt_m1 AT4G26030:UN0846.1:JASPAR 0.765 0.510 11 9 8 12 0.6667 0.7273 0.8889 R -1
oligos_6-8nt_m1 MYB51/MA1773.2/JASPAR oligos_6-8nt_m1 MYB51:MA1773.2:JASPAR 0.726 0.503 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_6-8nt_m1 MYB17/MA1766.2/JASPAR oligos_6-8nt_m1 MYB17:MA1766.2:JASPAR 0.704 0.487 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_6-8nt_m1 MYB30/MA1768.2/JASPAR oligos_6-8nt_m1 MYB30:MA1768.2:JASPAR 0.746 0.480 11 12 9 14 0.6429 0.8182 0.7500 D 2
oligos_6-8nt_m1 AT1G18960/UN0826.1/JASPAR oligos_6-8nt_m1 AT1G18960:UN0826.1:JASPAR 0.740 0.471 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6-8nt_m1 MYB13.ampDAP/M0538/AthalianaCistrome oligos_6-8nt_m1 MYB13.ampDAP:M0538:AthalianaCistrome 0.769 0.470 11 18 11 18 0.6111 1.0000 0.6111 D -2
oligos_6-8nt_m1 Nuclear/6r2v_A/3D-footprint oligos_6-8nt_m1 Nuclear:6r2v_A:3D-footprint 0.736 0.469 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_6-8nt_m1 OsWRKY45/6ir8_A/3D-footprint oligos_6-8nt_m1 OsWRKY45:6ir8_A:3D-footprint 0.707 0.450 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_6-8nt_m1 MYB40/MA1770.2/JASPAR oligos_6-8nt_m1 MYB40:MA1770.2:JASPAR 0.720 0.443 11 10 8 13 0.6154 0.7273 0.8000 D -2
oligos_6-8nt_m1 MYB96.DAP/M0547/AthalianaCistrome oligos_6-8nt_m1 MYB96.DAP:M0547:AthalianaCistrome 0.705 0.431 11 18 11 18 0.6111 1.0000 0.6111 R -4
oligos_6-8nt_m1 MYB63.DAP/M0536/AthalianaCistrome oligos_6-8nt_m1 MYB63.DAP:M0536:AthalianaCistrome 0.798 0.418 11 21 11 21 0.5238 1.0000 0.5238 D -9
oligos_6-8nt_m1 MYB58.ampDAP/M0497/AthalianaCistrome oligos_6-8nt_m1 MYB58.ampDAP:M0497:AthalianaCistrome 0.783 0.410 11 21 11 21 0.5238 1.0000 0.5238 R -5
oligos_6-8nt_m1 MYB60/MA1774.1/JASPAR oligos_6-8nt_m1 MYB60:MA1774.1:JASPAR 0.700 0.405 11 19 11 19 0.5789 1.0000 0.5789 D -3 
 Host name	rsat
 Job started	2025-06-19.091835
 Job done	2025-06-19.091837
 Seconds	1.28
	user	1.28
	system	0.07
	cuser	0.23
;	csystem	0.02