/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3.tf
		file1	1	10	125
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m3 bHLH172/UN0431.1/JASPAR oligos_6-8nt_m3 bHLH172:UN0431.1:JASPAR 0.988 0.988 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m3 BBM/UN0872.1/JASPAR oligos_6-8nt_m3 BBM:UN0872.1:JASPAR 0.960 0.768 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6-8nt_m3 BIM1/MA0964.1/JASPAR oligos_6-8nt_m3 BIM1:MA0964.1:JASPAR 0.730 0.730 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6-8nt_m3 BIM1/M0163_1.02/CISBP oligos_6-8nt_m3 BIM1:M0163_1.02:CISBP 0.729 0.729 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6-8nt_m3 FUS3/MA0565.1/JASPAR oligos_6-8nt_m3 FUS3:MA0565.1:JASPAR 0.739 0.665 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6-8nt_m3 ABI3/MA0564.1/JASPAR oligos_6-8nt_m3 ABI3:MA0564.1:JASPAR 0.736 0.662 10 9 9 10 0.9000 0.9000 1.0000 D 0
oligos_6-8nt_m3 Zm00001d034298/MA1834.1/JASPAR oligos_6-8nt_m3 Zm00001d034298:MA1834.1:JASPAR 0.706 0.642 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_6-8nt_m3 fgenesh1_pg.C_Chr_14.0001000151/M0253_1.02/CISBP oligos_6-8nt_m3 fgenesh1_pg.C_Chr_14.0001000151:M0253_1.02:CISBP 0.782 0.640 10 10 9 11 0.8182 0.9000 0.9000 R 1
oligos_6-8nt_m3 ANAC58/ANAC58/ArabidopsisPBM oligos_6-8nt_m3 ANAC58:ANAC58:ArabidopsisPBM 0.781 0.639 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6-8nt_m3 NAC058/MA0938.1/JASPAR oligos_6-8nt_m3 NAC058:MA0938.1:JASPAR 0.784 0.627 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6-8nt_m3 bHLH172/UN0431.2/JASPAR oligos_6-8nt_m3 bHLH172:UN0431.2:JASPAR 1.000 0.600 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6-8nt_m3 HBI1/MA1025.1/JASPAR oligos_6-8nt_m3 HBI1:MA1025.1:JASPAR 0.712 0.593 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6-8nt_m3 AT2G18300/M0155_1.02/CISBP oligos_6-8nt_m3 AT2G18300:M0155_1.02:CISBP 0.710 0.592 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6-8nt_m3 NAC019/MA1786.1/JASPAR oligos_6-8nt_m3 NAC019:MA1786.1:JASPAR 0.709 0.580 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6-8nt_m3 BHLH49/MA1740.1/JASPAR oligos_6-8nt_m3 BHLH49:MA1740.1:JASPAR 0.704 0.576 10 10 9 11 0.8182 0.9000 0.9000 R 1
oligos_6-8nt_m3 ANAC079/M1405_1.02/CISBP oligos_6-8nt_m3 ANAC079:M1405_1.02:CISBP 0.715 0.572 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6-8nt_m3 LEC2/M0146_1.02/CISBP oligos_6-8nt_m3 LEC2:M0146_1.02:CISBP 0.715 0.572 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6-8nt_m3 NAC080/MA0939.1/JASPAR oligos_6-8nt_m3 NAC080:MA0939.1:JASPAR 0.714 0.571 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6-8nt_m3 FHY3/MA0557.2/JASPAR oligos_6-8nt_m3 FHY3:MA0557.2:JASPAR 0.856 0.545 10 8 7 11 0.6364 0.7000 0.8750 D 3
oligos_6-8nt_m3 ANAC092/UP00572A_4/UniPROBE oligos_6-8nt_m3 ANAC092:UP00572A_4:UniPROBE 0.705 0.543 10 13 10 13 0.7692 1.0000 0.7692 D 0
oligos_6-8nt_m3 NST2/UP00575A_2/UniPROBE oligos_6-8nt_m3 NST2:UP00575A_2:UniPROBE 0.704 0.541 10 13 10 13 0.7692 1.0000 0.7692 D 0
oligos_6-8nt_m3 NAC019/MA1786.2/JASPAR oligos_6-8nt_m3 NAC019:MA1786.2:JASPAR 0.772 0.540 10 7 7 10 0.7000 0.7000 1.0000 D 3
oligos_6-8nt_m3 ZCW32/M0153_1.02/CISBP oligos_6-8nt_m3 ZCW32:M0153_1.02:CISBP 0.733 0.533 10 9 8 11 0.7273 0.8000 0.8889 R 2
oligos_6-8nt_m3 FAR1/MA1382.2/JASPAR oligos_6-8nt_m3 FAR1:MA1382.2:JASPAR 0.725 0.527 10 9 8 11 0.7273 0.8000 0.8889 D 2
oligos_6-8nt_m3 PK18474.1/M0149_1.02/CISBP oligos_6-8nt_m3 PK18474.1:M0149_1.02:CISBP 0.738 0.517 10 7 7 10 0.7000 0.7000 1.0000 R 2
oligos_6-8nt_m3 FHY3/MA0557.1/JASPAR oligos_6-8nt_m3 FHY3:MA0557.1:JASPAR 0.744 0.515 10 12 9 13 0.6923 0.9000 0.7500 D 1
oligos_6-8nt_m3 bHLH34/MA0962.2/JASPAR oligos_6-8nt_m3 bHLH34:MA0962.2:JASPAR 0.735 0.515 10 7 7 10 0.7000 0.7000 1.0000 R 3
oligos_6-8nt_m3 CAMTA2/MA0969.2/JASPAR oligos_6-8nt_m3 CAMTA2:MA0969.2:JASPAR 0.858 0.515 10 6 6 10 0.6000 0.6000 1.0000 R 4
oligos_6-8nt_m3 ATNAC6/M1407_1.02/CISBP oligos_6-8nt_m3 ATNAC6:M1407_1.02:CISBP 0.707 0.514 10 9 8 11 0.7273 0.8000 0.8889 D 2
oligos_6-8nt_m3 CAMTA3/MA0970.2/JASPAR oligos_6-8nt_m3 CAMTA3:MA0970.2:JASPAR 0.849 0.509 10 6 6 10 0.6000 0.6000 1.0000 R 4
oligos_6-8nt_m3 CAMTA1/MA1197.1/JASPAR oligos_6-8nt_m3 CAMTA1:MA1197.1:JASPAR 0.729 0.504 10 12 9 13 0.6923 0.9000 0.7500 R 1
oligos_6-8nt_m3 HBI1/MA1025.2/JASPAR oligos_6-8nt_m3 HBI1:MA1025.2:JASPAR 0.717 0.502 10 7 7 10 0.7000 0.7000 1.0000 D 2
oligos_6-8nt_m3 CAMTA1/MA1197.2/JASPAR oligos_6-8nt_m3 CAMTA1:MA1197.2:JASPAR 0.859 0.501 10 9 7 12 0.5833 0.7000 0.7778 R 3
oligos_6-8nt_m3 POC1/M0151_1.02/CISBP oligos_6-8nt_m3 POC1:M0151_1.02:CISBP 0.714 0.500 10 7 7 10 0.7000 0.7000 1.0000 R 2
oligos_6-8nt_m3 BHLH49/MA1740.2/JASPAR oligos_6-8nt_m3 BHLH49:MA1740.2:JASPAR 0.707 0.495 10 7 7 10 0.7000 0.7000 1.0000 R 2
oligos_6-8nt_m3 Zm00001d034298/MA1834.2/JASPAR oligos_6-8nt_m3 Zm00001d034298:MA1834.2:JASPAR 0.707 0.495 10 7 7 10 0.7000 0.7000 1.0000 D 2
oligos_6-8nt_m3 XM_002866389.1/M1410_1.02/CISBP oligos_6-8nt_m3 XM_002866389.1:M1410_1.02:CISBP 0.739 0.493 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6-8nt_m3 NAC/3swm_B/3D-footprint oligos_6-8nt_m3 NAC:3swm_B:3D-footprint 0.815 0.489 10 6 6 10 0.6000 0.6000 1.0000 D 3
oligos_6-8nt_m3 ZmNAC128/EEAD0022/EEADannot oligos_6-8nt_m3 ZmNAC128:EEAD0022:EEADannot 0.802 0.481 10 6 6 10 0.6000 0.6000 1.0000 D 4
oligos_6-8nt_m3 FAR1/MA1382.1/JASPAR oligos_6-8nt_m3 FAR1:MA1382.1:JASPAR 0.717 0.478 10 15 10 15 0.6667 1.0000 0.6667 D -1
oligos_6-8nt_m3 e_gw1.159.34.1/M1412_1.02/CISBP oligos_6-8nt_m3 e_gw1.159.34.1:M1412_1.02:CISBP 0.711 0.474 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6-8nt_m3 B3/6j9a_A/3D-footprint oligos_6-8nt_m3 B3:6j9a_A:3D-footprint 0.769 0.461 10 6 6 10 0.6000 0.6000 1.0000 D 3
oligos_6-8nt_m3 ABI3/MA0564.2/JASPAR oligos_6-8nt_m3 ABI3:MA0564.2:JASPAR 0.760 0.456 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6-8nt_m3 MYB124/MA1426.2/JASPAR oligos_6-8nt_m3 MYB124:MA1426.2:JASPAR 0.830 0.453 10 7 6 11 0.5455 0.6000 0.8571 D 4
oligos_6-8nt_m3 EICBP-B/UN0362.1/JASPAR oligos_6-8nt_m3 EICBP-B:UN0362.1:JASPAR 0.714 0.446 10 16 10 16 0.6250 1.0000 0.6250 R 0
oligos_6-8nt_m3 B3/6j9c_D/3D-footprint oligos_6-8nt_m3 B3:6j9c_D:3D-footprint 0.742 0.445 10 6 6 10 0.6000 0.6000 1.0000 D 1
oligos_6-8nt_m3 B3/5yzz_C/3D-footprint oligos_6-8nt_m3 B3:5yzz_C:3D-footprint 0.731 0.438 10 6 6 10 0.6000 0.6000 1.0000 D 3
oligos_6-8nt_m3 LEC2/MA0581.2/JASPAR oligos_6-8nt_m3 LEC2:MA0581.2:JASPAR 0.715 0.429 10 6 6 10 0.6000 0.6000 1.0000 D 3
oligos_6-8nt_m3 SPCH/UN0823.1/JASPAR oligos_6-8nt_m3 SPCH:UN0823.1:JASPAR 0.710 0.426 10 6 6 10 0.6000 0.6000 1.0000 D 3
oligos_6-8nt_m3 ILR3/MA2397.1/JASPAR oligos_6-8nt_m3 ILR3:MA2397.1:JASPAR 0.704 0.422 10 6 6 10 0.6000 0.6000 1.0000 D 3
oligos_6-8nt_m3 NF-YB9/UN0822.1/JASPAR oligos_6-8nt_m3 NF-YB9:UN0822.1:JASPAR 0.703 0.422 10 6 6 10 0.6000 0.6000 1.0000 D 3
oligos_6-8nt_m3 PLT1/MA1377.2/JASPAR oligos_6-8nt_m3 PLT1:MA1377.2:JASPAR 0.768 0.407 10 16 9 17 0.5294 0.9000 0.5625 D 1 
 Host name	rsat
 Job started	2025-06-19.091839
 Job done	2025-06-19.091840
 Seconds	1.46
	user	1.46
	system	0.07
	cuser	0.2
;	csystem	0.06