/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5.tf
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants_alignments_1ton.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091816_2025-06-19.091816_x3rpdD/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5.tf
		file1	1	12	155
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m5 Zm00001d034298/MA1834.1/JASPAR oligos_6-8nt_m5 Zm00001d034298:MA1834.1:JASPAR 0.743 0.681 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_6-8nt_m5 FAR1/MA1382.1/JASPAR oligos_6-8nt_m5 FAR1:MA1382.1:JASPAR 0.724 0.579 12 15 12 15 0.8000 1.0000 0.8000 D -1
oligos_6-8nt_m5 NF-YB1/UN0427.1/JASPAR oligos_6-8nt_m5 NF-YB1:UN0427.1:JASPAR 0.707 0.555 12 13 11 14 0.7857 0.9167 0.8462 D -2
oligos_6-8nt_m5 FAR1/MA1382.2/JASPAR oligos_6-8nt_m5 FAR1:MA1382.2:JASPAR 0.737 0.553 12 9 9 12 0.7500 0.7500 1.0000 D 2
oligos_6-8nt_m5 NF-YB1/UN0427.2/JASPAR oligos_6-8nt_m5 NF-YB1:UN0427.2:JASPAR 0.766 0.530 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_6-8nt_m5 BAD1/MA2408.1/JASPAR oligos_6-8nt_m5 BAD1:MA2408.1:JASPAR 0.706 0.504 12 12 10 14 0.7143 0.8333 0.8333 D 2
oligos_6-8nt_m5 FHY3/MA0557.2/JASPAR oligos_6-8nt_m5 FHY3:MA0557.2:JASPAR 0.739 0.493 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_6-8nt_m5 LEC1-A/UN0422.2/JASPAR oligos_6-8nt_m5 LEC1-A:UN0422.2:JASPAR 0.714 0.476 12 8 8 12 0.6667 0.6667 1.0000 R 0
oligos_6-8nt_m5 Zm00001d034298/MA1834.2/JASPAR oligos_6-8nt_m5 Zm00001d034298:MA1834.2:JASPAR 0.796 0.464 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_6-8nt_m5 MYB88/MA2029.2/JASPAR oligos_6-8nt_m5 MYB88:MA2029.2:JASPAR 0.717 0.441 12 9 8 13 0.6154 0.6667 0.8889 D 4
oligos_6-8nt_m5 ASR1/MA1812.2/JASPAR oligos_6-8nt_m5 ASR1:MA1812.2:JASPAR 0.710 0.437 12 9 8 13 0.6154 0.6667 0.8889 D 4
oligos_6-8nt_m5 ABF4/MA1659.2/JASPAR oligos_6-8nt_m5 ABF4:MA1659.2:JASPAR 0.739 0.431 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_6-8nt_m5 MYB124/MA1426.2/JASPAR oligos_6-8nt_m5 MYB124:MA1426.2:JASPAR 0.726 0.424 12 7 7 12 0.5833 0.5833 1.0000 D 4
oligos_6-8nt_m5 TCP20/M1647_1.02/CISBP oligos_6-8nt_m5 TCP20:M1647_1.02:CISBP 0.737 0.421 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_6-8nt_m5 TCP20/MA1065.1/JASPAR oligos_6-8nt_m5 TCP20:MA1065.1:JASPAR 0.735 0.420 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_6-8nt_m5 FAR1.ampDAP/M0372/AthalianaCistrome oligos_6-8nt_m5 FAR1.ampDAP:M0372:AthalianaCistrome 0.726 0.415 12 21 12 21 0.5714 1.0000 0.5714 R -9
oligos_6-8nt_m5 TCP19/MA1063.2/JASPAR oligos_6-8nt_m5 TCP19:MA1063.2:JASPAR 0.959 0.411 12 8 6 14 0.4286 0.5000 0.7500 D -2
oligos_6-8nt_m5 TCP8/MA1428.2/JASPAR oligos_6-8nt_m5 TCP8:MA1428.2:JASPAR 0.955 0.409 12 8 6 14 0.4286 0.5000 0.7500 D -2
oligos_6-8nt_m5 GLYMA19G26560/MA2390.1/JASPAR oligos_6-8nt_m5 GLYMA19G26560:MA2390.1:JASPAR 0.943 0.404 12 8 6 14 0.4286 0.5000 0.7500 D -2
oligos_6-8nt_m5 Glyma19g26560.1/MA1019.2/JASPAR oligos_6-8nt_m5 Glyma19g26560.1:MA1019.2:JASPAR 0.943 0.404 12 8 6 14 0.4286 0.5000 0.7500 D -2 
 Host name	rsat
 Job started	2025-06-19.091842
 Job done	2025-06-19.091844
 Seconds	1.34
	user	1.34
	system	0.09
	cuser	0.22
;	csystem	0.04