position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title m5 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 169 Sum of sequence lengths 97737 Min sequence length 0 Max sequence length 1000 Average sequence length 578 Possible positions 97737 Oligonucleotide statistics: Total occurrences 95361 Position interval parameters: Position interval 20 Number of windows 50 Total positions 97737 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 46 875 2 -24 [-479,-460] -469.5 50 969 3 -23 [-459,-440] -449.5 50 1000 4 -22 [-439,-420] -429.5 56 1076 5 -21 [-419,-400] -409.5 58 1133 6 -20 [-399,-380] -389.5 62 1216 7 -19 [-379,-360] -369.5 64 1261 8 -18 [-359,-340] -349.5 65 1282 9 -17 [-339,-320] -329.5 67 1322 10 -16 [-319,-300] -309.5 68 1360 11 -15 [-299,-280] -289.5 71 1392 12 -14 [-279,-260] -269.5 73 1429 13 -13 [-259,-240] -249.5 77 1478 14 -12 [-239,-220] -229.5 77 1540 15 -11 [-219,-200] -209.5 81 1587 16 -10 [-199,-180] -189.5 90 1673 17 -9 [-179,-160] -169.5 116 2058 18 -8 [-159,-140] -149.5 156 2791 19 -7 [-139,-120] -129.5 169 3214 20 -6 [-119,-100] -109.5 169 3380 21 -5 [-99,-80] -89.5 169 3380 22 -4 [-79,-60] -69.5 169 3380 23 -3 [-59,-40] -49.5 169 3380 24 -2 [-39,-20] -29.5 169 3380 25 -1 [-19,0] -9.5 169 3380 26 0 [1,20] 10.5 169 3380 27 1 [21,40] 30.5 169 3380 28 2 [41,60] 50.5 169 3380 29 3 [61,80] 70.5 169 3380 30 4 [81,100] 90.5 169 3380 31 5 [101,120] 110.5 169 3380 32 6 [121,140] 130.5 169 3203 33 7 [141,160] 150.5 154 2750 34 8 [161,180] 170.5 111 2027 35 9 [181,200] 190.5 86 1665 36 10 [201,220] 210.5 81 1584 37 11 [221,240] 230.5 77 1540 38 12 [241,260] 250.5 77 1473 39 13 [261,280] 270.5 73 1426 40 14 [281,300] 290.5 71 1390 41 15 [301,320] 310.5 68 1358 42 16 [321,340] 330.5 67 1318 43 17 [341,360] 350.5 65 1281 44 18 [361,380] 370.5 64 1258 45 19 [381,400] 390.5 61 1212 46 20 [401,420] 410.5 57 1132 47 21 [421,440] 430.5 56 1070 48 22 [441,460] 450.5 50 1000 49 23 [461,480] 470.5 50 964 50 24 [481,500] 490.5 46 870 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 20347 | 161.3 | 49 | 6.8e-14 | 2.7e-13 | 12.57 | 1 | 137 | 187 | 168 | 193 | 210 | 234 | 248 | 250 | 233 | 244 | 245 | 278 | 280 | 275 | 320 | 330 | 380 | 603 | 634 | 648 | 725 | 763 | 745 | 758 | 775 | 786 | 713 | 743 | 678 | 714 | 705 | 679 | 566 | 408 | 335 | 349 | 348 | 339 | 309 | 278 | 263 | 268 | 245 | 323 | 325 | 272 | 245 | 211 | 200 | 182 |
| g | g | 26876 | 131.4 | 49 | 1.9e-09 | 7.4e-09 | 8.13 | 2 | 232 | 235 | 263 | 280 | 301 | 312 | 375 | 340 | 403 | 380 | 418 | 401 | 434 | 442 | 403 | 455 | 557 | 745 | 949 | 1014 | 916 | 859 | 842 | 860 | 878 | 874 | 930 | 910 | 920 | 964 | 984 | 990 | 827 | 617 | 479 | 467 | 421 | 387 | 389 | 422 | 393 | 387 | 325 | 291 | 275 | 277 | 281 | 291 | 255 | 226 |
| a | a | 20099 | 116.7 | 49 | 1.9e-07 | 7.6e-07 | 6.12 | 3 | 154 | 193 | 200 | 231 | 243 | 263 | 204 | 269 | 225 | 264 | 243 | 256 | 264 | 298 | 332 | 313 | 439 | 617 | 687 | 672 | 629 | 653 | 745 | 736 | 729 | 722 | 713 | 670 | 737 | 679 | 709 | 614 | 540 | 430 | 310 | 353 | 353 | 336 | 337 | 266 | 287 | 251 | 266 | 268 | 275 | 260 | 253 | 211 | 197 | 203 |
| c | c | 28039 | 81.1 | 49 | 2.7e-03 | 0.011 | 1.97 | 4 | 291 | 312 | 329 | 349 | 339 | 358 | 382 | 381 | 401 | 412 | 426 | 423 | 408 | 428 | 443 | 476 | 597 | 729 | 851 | 934 | 1005 | 1017 | 976 | 966 | 941 | 938 | 964 | 1017 | 977 | 964 | 961 | 900 | 786 | 543 | 523 | 415 | 418 | 411 | 383 | 404 | 389 | 344 | 400 | 351 | 317 | 311 | 291 | 287 | 312 | 259 |
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