/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title m5 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	169
	Sum of sequence lengths      	97737
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	578
	Possible positions           	97568
 Oligonucleotide statistics:
	Total occurrences    	95162
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	97568
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	46	875
	2	-24	[-479,-460]	-469.5	50	969
	3	-23	[-459,-440]	-449.5	50	1000
	4	-22	[-439,-420]	-429.5	56	1076
	5	-21	[-419,-400]	-409.5	58	1133
	6	-20	[-399,-380]	-389.5	62	1216
	7	-19	[-379,-360]	-369.5	64	1261
	8	-18	[-359,-340]	-349.5	65	1282
	9	-17	[-339,-320]	-329.5	67	1322
	10	-16	[-319,-300]	-309.5	68	1360
	11	-15	[-299,-280]	-289.5	71	1392
	12	-14	[-279,-260]	-269.5	73	1429
	13	-13	[-259,-240]	-249.5	77	1478
	14	-12	[-239,-220]	-229.5	77	1540
	15	-11	[-219,-200]	-209.5	81	1587
	16	-10	[-199,-180]	-189.5	90	1673
	17	-9	[-179,-160]	-169.5	116	2058
	18	-8	[-159,-140]	-149.5	156	2791
	19	-7	[-139,-120]	-129.5	169	3214
	20	-6	[-119,-100]	-109.5	169	3380
	21	-5	[-99,-80]	-89.5	169	3380
	22	-4	[-79,-60]	-69.5	169	3380
	23	-3	[-59,-40]	-49.5	169	3380
	24	-2	[-39,-20]	-29.5	169	3380
	25	-1	[-19,0]	-9.5	169	3380
	26	0	[1,20]	10.5	169	3380
	27	1	[21,40]	30.5	169	3380
	28	2	[41,60]	50.5	169	3380
	29	3	[61,80]	70.5	169	3380
	30	4	[81,100]	90.5	169	3380
	31	5	[101,120]	110.5	169	3380
	32	6	[121,140]	130.5	169	3188
	33	7	[141,160]	150.5	154	2707
	34	8	[161,180]	170.5	110	2002
	35	9	[181,200]	190.5	85	1660
	36	10	[201,220]	210.5	81	1580
	37	11	[221,240]	230.5	77	1540
	38	12	[241,260]	250.5	76	1469
	39	13	[261,280]	270.5	73	1424
	40	14	[281,300]	290.5	71	1387
	41	15	[301,320]	310.5	68	1357
	42	16	[321,340]	330.5	67	1316
	43	17	[341,360]	350.5	64	1280
	44	18	[361,380]	370.5	64	1255
	45	19	[381,400]	390.5	61	1208
	46	20	[401,420]	410.5	57	1131
	47	21	[421,440]	430.5	56	1064
	48	22	[441,460]	450.5	50	1000
	49	23	[461,480]	470.5	50	960
	50	24	[481,500]	490.5	46	824

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 4943 227.1 49 9.5e-25 1.5e-23 22.82 1 21 32 31 38 41 49 56 44 37 47 34 53 57 60 78 80 72 156 140 166 199 191 202 202 225 231 181 192 158 175 145 158 141 96 72 92 82 81 74 69 71 71 58 95 95 74 62 52 59 48
cc cc 7591 170.5 49 2.4e-15 3.9e-14 13.41 2 100 108 100 119 100 100 122 122 118 111 125 127 120 123 131 144 194 210 216 258 296 301 291 250 251 236 246 273 243 247 236 219 207 121 122 91 111 96 90 130 96 73 116 80 72 67 77 64 85 56
ta ta 3331 161.6 49 6.0e-14 9.7e-13 12.02 3 25 32 25 35 41 38 28 39 36 39 38 42 48 38 50 43 72 111 89 88 77 102 132 142 154 136 113 127 117 127 120 101 74 53 50 61 69 64 66 53 42 35 43 52 71 68 47 25 22 31
gg gg 7212 159.9 49 1.1e-13 1.8e-12 11.75 4 66 54 69 79 88 64 113 83 127 94 121 116 132 130 102 135 138 210 283 300 263 234 224 217 249 222 229 233 245 274 270 271 243 165 121 127 99 91 109 123 103 105 75 52 51 62 69 80 56 46
aa aa 4685 129.8 49 3.1e-09 4.9e-08 7.31 5 26 44 42 50 50 70 35 64 35 48 45 41 54 73 74 71 107 155 165 139 144 166 189 188 164 197 166 160 186 150 148 133 132 105 82 78 90 69 86 50 77 55 69 60 58 68 66 61 46 54
cg cg 7008 109.8 49 1.5e-06 2.3e-05 4.63 6 61 60 78 65 65 82 89 76 116 113 117 98 99 111 84 116 146 174 211 258 227 215 200 236 211 239 257 261 244 253 258 268 220 163 153 121 99 100 95 107 127 113 115 82 70 73 60 75 81 66
ct ct 6116 98.7 49 3.4e-05 0.00054 3.27 7 63 69 58 61 71 73 75 76 67 75 90 87 81 82 97 91 88 144 169 174 224 245 236 213 235 233 214 244 221 230 219 200 162 110 130 83 98 86 94 78 73 77 72 96 80 92 70 74 70 66
at at 4192 95.5 49 7.8e-05 0.0013 2.90 8 25 40 34 44 49 43 44 55 53 37 40 64 55 54 65 62 107 149 126 149 147 160 142 158 154 138 146 136 149 156 159 127 104 80 50 82 79 85 65 61 55 45 65 68 80 50 50 36 37 33
ga ga 4764 70.9 49 2.2e-02 0.35 0.45 9 41 42 41 42 48 52 45 56 59 62 60 62 57 78 69 74 104 138 172 197 153 134 169 155 156 164 182 141 163 170 195 162 147 119 72 94 73 77 76 81 72 79 65 62 54 41 58 51 55 45
ac ac 5506 66.6 49 4.8e-02 0.77 0.11 10 47 65 73 79 76 75 56 82 63 98 79 75 73 84 87 78 104 144 179 170 178 190 213 220 212 195 190 182 190 183 196 152 137 115 88 100 87 89 92 58 75 77 72 79 63 71 57 53 60 45
gc gc 9791 65.8 49 5.4e-02 0.87 0.06 11 94 93 111 112 103 135 145 125 139 141 157 146 160 153 151 156 204 243 304 354 335 312 299 301 308 313 346 360 363 369 343 357 266 214 200 155 149 138 131 150 151 133 127 114 111 105 97 113 108 97
ag ag 5669 64.8 49 6.5e-02 1 -0.02 12 55 44 51 58 68 75 69 68 74 81 79 76 82 86 105 102 120 169 216 213 160 137 201 170 198 192 211 191 212 190 206 201 161 122 90 92 97 92 93 97 80 74 60 60 74 71 77 61 54 54
tc tc 5101 63.0 49 8.7e-02 1.4 -0.14 13 45 40 51 45 47 52 65 54 69 69 68 69 59 67 71 105 89 137 152 157 198 204 184 188 171 201 183 191 180 169 186 173 152 105 93 68 80 81 69 70 62 70 70 85 68 69 55 62 60 43
gt gt 5050 60.4 49 1.3e-01 2 -0.31 14 31 46 42 47 62 60 72 76 78 83 80 77 85 81 80 90 110 154 190 163 165 178 149 187 165 175 173 176 149 151 176 192 153 114 85 90 100 79 72 67 67 69 58 63 57 68 55 47 35 28
tg tg 6932 52.7 49 3.3e-01 5.3 -0.73 15 46 83 61 74 81 95 99 112 91 89 105 112 116 109 121 102 147 198 253 237 251 266 227 226 225 218 236 233 222 243 254 243 193 150 118 126 117 113 99 86 87 91 74 90 90 61 81 72 59 50
ca ca 7271 49.1 49 4.7e-01 7.5 -0.88 16 67 75 93 104 103 103 96 107 100 113 94 110 108 112 131 124 168 201 254 244 258 255 249 267 244 230 247 239 269 234 248 211 183 141 116 120 110 128 104 87 92 79 96 92 94 79 83 74 73 62 
 Host name	rsat
 Job started	2025-06-19.091932
 Job done	2025-06-19.091933
 Seconds	0.62
	user	0.62
	system	0
	cuser	0
;	csystem	0