/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3.tf
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_footprintDB-plants.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3.tf
		file1	1	12	315
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m3 ABI4/ABI4/Athamap oligos_6-8nt_m3 ABI4:ABI4:Athamap 0.839 0.699 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_6-8nt_m3 DEAR3/DEAR3/ArabidopsisPBM oligos_6-8nt_m3 DEAR3:DEAR3:ArabidopsisPBM 0.750 0.625 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6-8nt_m3 ERF055/MA1263.2/JASPAR oligos_6-8nt_m3 ERF055:MA1263.2:JASPAR 0.703 0.527 12 9 9 12 0.7500 0.7500 1.0000 R 1
oligos_6-8nt_m3 ERF112/MA1245.3/JASPAR oligos_6-8nt_m3 ERF112:MA1245.3:JASPAR 0.700 0.525 12 9 9 12 0.7500 0.7500 1.0000 D 1
oligos_6-8nt_m3 RAP2-6/MA1052.1/JASPAR oligos_6-8nt_m3 RAP2-6:MA1052.1:JASPAR 0.780 0.520 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_6-8nt_m3 NF-YB1/UN0427.2/JASPAR oligos_6-8nt_m3 NF-YB1:UN0427.2:JASPAR 0.748 0.518 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_6-8nt_m3 RAP2-10/MA0980.1/JASPAR oligos_6-8nt_m3 RAP2-10:MA0980.1:JASPAR 0.777 0.518 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_6-8nt_m3 CRF2/MA0975.1/JASPAR oligos_6-8nt_m3 CRF2:MA0975.1:JASPAR 0.769 0.512 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_6-8nt_m3 CRF2/M0029_1.02/CISBP oligos_6-8nt_m3 CRF2:M0029_1.02:CISBP 0.768 0.512 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_6-8nt_m3 ERF118/MA1671.2/JASPAR oligos_6-8nt_m3 ERF118:MA1671.2:JASPAR 0.764 0.509 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_6-8nt_m3 Zm00001d020267/MA1817.2/JASPAR oligos_6-8nt_m3 Zm00001d020267:MA1817.2:JASPAR 0.736 0.509 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_6-8nt_m3 ERF008/MA0979.1/JASPAR oligos_6-8nt_m3 ERF008:MA0979.1:JASPAR 0.757 0.505 12 8 8 12 0.6667 0.6667 1.0000 D 2
oligos_6-8nt_m3 ERF109/MA1053.1/JASPAR oligos_6-8nt_m3 ERF109:MA1053.1:JASPAR 0.756 0.504 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_6-8nt_m3 CRF4/MA0976.1/JASPAR oligos_6-8nt_m3 CRF4:MA0976.1:JASPAR 0.754 0.503 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_6-8nt_m3 CRF4/M0033_1.02/CISBP oligos_6-8nt_m3 CRF4:M0033_1.02:CISBP 0.754 0.502 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_6-8nt_m3 ATERF-4/M0022_1.02/CISBP oligos_6-8nt_m3 ATERF-4:M0022_1.02:CISBP 0.752 0.501 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_6-8nt_m3 ERF4/MA0992.1/JASPAR oligos_6-8nt_m3 ERF4:MA0992.1:JASPAR 0.751 0.501 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_6-8nt_m3 ERF054/MA1232.2/JASPAR oligos_6-8nt_m3 ERF054:MA1232.2:JASPAR 0.745 0.496 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_6-8nt_m3 TB1/MA1430.1/JASPAR oligos_6-8nt_m3 TB1:MA1430.1:JASPAR 0.709 0.491 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_6-8nt_m3 AT3G57600/MA1242.1/JASPAR oligos_6-8nt_m3 AT3G57600:MA1242.1:JASPAR 0.764 0.491 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_6-8nt_m3 LEP/MA1246.2/JASPAR oligos_6-8nt_m3 LEP:MA1246.2:JASPAR 0.709 0.491 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_6-8nt_m3 RAP2-3/MA1051.1/JASPAR oligos_6-8nt_m3 RAP2-3:MA1051.1:JASPAR 0.720 0.480 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_6-8nt_m3 Zm00001d049364/MA1833.2/JASPAR oligos_6-8nt_m3 Zm00001d049364:MA1833.2:JASPAR 0.737 0.474 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_6-8nt_m3 ERF012/MA1248.2/JASPAR oligos_6-8nt_m3 ERF012:MA1248.2:JASPAR 0.704 0.469 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_6-8nt_m3 TB1/MA1430.2/JASPAR oligos_6-8nt_m3 TB1:MA1430.2:JASPAR 0.742 0.457 12 9 8 13 0.6154 0.6667 0.8889 D -1
oligos_6-8nt_m3 DEAR3/MA1376.2/JASPAR oligos_6-8nt_m3 DEAR3:MA1376.2:JASPAR 0.779 0.454 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_6-8nt_m3 ERF094/MA1049.2/JASPAR oligos_6-8nt_m3 ERF094:MA1049.2:JASPAR 0.738 0.431 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_6-8nt_m3 NtERF2/NtERF2/Athamap oligos_6-8nt_m3 NtERF2:NtERF2:Athamap 0.737 0.430 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_6-8nt_m3 ERF13/MA1004.2/JASPAR oligos_6-8nt_m3 ERF13:MA1004.2:JASPAR 0.736 0.429 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_6-8nt_m3 ERF057/MA1753.2/JASPAR oligos_6-8nt_m3 ERF057:MA1753.2:JASPAR 0.770 0.408 12 14 9 17 0.5294 0.7500 0.6429 D -5
oligos_6-8nt_m3 ARF36/EEAD0039/EEADannot oligos_6-8nt_m3 ARF36:EEAD0039:EEADannot 0.813 0.406 12 9 7 14 0.5000 0.5833 0.7778 R -2
oligos_6-8nt_m3 BAD1/MA2408.1/JASPAR oligos_6-8nt_m3 BAD1:MA2408.1:JASPAR 0.809 0.404 12 12 8 16 0.5000 0.6667 0.6667 D -4 
 Host name	rsat
 Job started	2025-06-19.091953
 Job done	2025-06-19.091954
 Seconds	1.28
	user	1.28
	system	0.04
	cuser	0.23
;	csystem	0.05