/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.091929_2025-06-19.091929_ZGCM7J/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4.tf
		file1	1	11	157
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m4 RGL2/M0821_1.02/CISBP oligos_6-8nt_m4 RGL2:M0821_1.02:CISBP 0.768 0.628 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_6-8nt_m4 SPL4/MA1058.1/JASPAR oligos_6-8nt_m4 SPL4:MA1058.1:JASPAR 0.749 0.613 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_6-8nt_m4 SPL4/M1563_1.02/CISBP oligos_6-8nt_m4 SPL4:M1563_1.02:CISBP 0.748 0.612 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_6-8nt_m4 SPL12/MA1057.1/JASPAR oligos_6-8nt_m4 SPL12:MA1057.1:JASPAR 0.834 0.607 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_6-8nt_m4 SPL12/M1566_1.02/CISBP oligos_6-8nt_m4 SPL12:M1566_1.02:CISBP 0.834 0.607 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_6-8nt_m4 AT5G47660/M1278_1.02/CISBP oligos_6-8nt_m4 AT5G47660:M1278_1.02:CISBP 0.823 0.599 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6-8nt_m4 SPL9/MA1322.2/JASPAR oligos_6-8nt_m4 SPL9:MA1322.2:JASPAR 0.715 0.595 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_6-8nt_m4 PK22320.1/M1560_1.02/CISBP oligos_6-8nt_m4 PK22320.1:M1560_1.02:CISBP 0.788 0.591 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_6-8nt_m4 SPL3/MA1319.1/JASPAR oligos_6-8nt_m4 SPL3:MA1319.1:JASPAR 0.802 0.583 11 8 8 11 0.7273 0.7273 1.0000 D 3
oligos_6-8nt_m4 SPL11/MA1056.2/JASPAR oligos_6-8nt_m4 SPL11:MA1056.2:JASPAR 0.799 0.581 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_6-8nt_m4 At5g28300/At5g28300/ArabidopsisPBM oligos_6-8nt_m4 At5g28300:At5g28300:ArabidopsisPBM 0.758 0.569 11 10 9 12 0.7500 0.8182 0.9000 R -1
oligos_6-8nt_m4 SPL13A/MA1321.2/JASPAR oligos_6-8nt_m4 SPL13A:MA1321.2:JASPAR 0.778 0.565 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_6-8nt_m4 SPL5/M1565_1.02/CISBP oligos_6-8nt_m4 SPL5:M1565_1.02:CISBP 0.846 0.564 11 9 8 12 0.6667 0.7273 0.8889 R 3
oligos_6-8nt_m4 SPL5/MA1059.1/JASPAR oligos_6-8nt_m4 SPL5:MA1059.1:JASPAR 0.844 0.563 11 9 8 12 0.6667 0.7273 0.8889 R 3
oligos_6-8nt_m4 SPL1/SPL1_2/ArabidopsisPBM oligos_6-8nt_m4 SPL1:SPL1_2:ArabidopsisPBM 0.749 0.562 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_6-8nt_m4 BHLH28/UN0359.2/JASPAR oligos_6-8nt_m4 BHLH28:UN0359.2:JASPAR 0.770 0.560 11 8 8 11 0.7273 0.7273 1.0000 D 3
oligos_6-8nt_m4 B9GPL8_POPTR/M1568_1.02/CISBP oligos_6-8nt_m4 B9GPL8_POPTR:M1568_1.02:CISBP 0.873 0.556 11 7 7 11 0.6364 0.6364 1.0000 R 4
oligos_6-8nt_m4 POPTR/MA0955.1/JASPAR oligos_6-8nt_m4 POPTR:MA0955.1:JASPAR 0.872 0.555 11 7 7 11 0.6364 0.6364 1.0000 R 4
oligos_6-8nt_m4 SPL3/MA0577.4/JASPAR oligos_6-8nt_m4 SPL3:MA0577.4:JASPAR 0.762 0.554 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_6-8nt_m4 PK06791.1/M1559_1.02/CISBP oligos_6-8nt_m4 PK06791.1:M1559_1.02:CISBP 0.830 0.553 11 9 8 12 0.6667 0.7273 0.8889 R 3
oligos_6-8nt_m4 SPL10/MA1799.1/JASPAR oligos_6-8nt_m4 SPL10:MA1799.1:JASPAR 0.725 0.544 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_6-8nt_m4 SPL1/MA1055.3/JASPAR oligos_6-8nt_m4 SPL1:MA1055.3:JASPAR 0.745 0.542 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_6-8nt_m4 SPL5.ampDAP/M0731/AthalianaCistrome oligos_6-8nt_m4 SPL5.ampDAP:M0731:AthalianaCistrome 0.719 0.539 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_6-8nt_m4 SPL15/MA1320.2/JASPAR oligos_6-8nt_m4 SPL15:MA1320.2:JASPAR 0.737 0.536 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_6-8nt_m4 SPL1.ampDAP/M0735/AthalianaCistrome oligos_6-8nt_m4 SPL1.ampDAP:M0735:AthalianaCistrome 0.711 0.533 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_6-8nt_m4 SPL14/MA0586.3/JASPAR oligos_6-8nt_m4 SPL14:MA0586.3:JASPAR 0.813 0.518 11 7 7 11 0.6364 0.6364 1.0000 D 3
oligos_6-8nt_m4 SPL1/MA1055.1/JASPAR oligos_6-8nt_m4 SPL1:MA1055.1:JASPAR 0.867 0.506 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_6-8nt_m4 SPL13/MA1321.1/JASPAR oligos_6-8nt_m4 SPL13:MA1321.1:JASPAR 0.725 0.502 11 11 9 13 0.6923 0.8182 0.8182 R 2
oligos_6-8nt_m4 fgenesh1_pg.scaffold_252000020/M1571_1.02/CISBP oligos_6-8nt_m4 fgenesh1_pg.scaffold_252000020:M1571_1.02:CISBP 0.742 0.495 11 9 8 12 0.6667 0.7273 0.8889 R 3
oligos_6-8nt_m4 SPL1/SPL1/ArabidopsisPBM oligos_6-8nt_m4 SPL1:SPL1:ArabidopsisPBM 0.803 0.494 11 10 8 13 0.6154 0.7273 0.8000 D 3
oligos_6-8nt_m4 SPL12/MA1057.2/JASPAR oligos_6-8nt_m4 SPL12:MA1057.2:JASPAR 0.903 0.492 11 6 6 11 0.5455 0.5455 1.0000 R 4
oligos_6-8nt_m4 SPL9/MA1322.3/JASPAR oligos_6-8nt_m4 SPL9:MA1322.3:JASPAR 0.773 0.492 11 7 7 11 0.6364 0.6364 1.0000 D 3
oligos_6-8nt_m4 OsRR22/MA1409.2/JASPAR oligos_6-8nt_m4 OsRR22:MA1409.2:JASPAR 0.731 0.487 11 9 8 12 0.6667 0.7273 0.8889 R 3
oligos_6-8nt_m4 AtSPL3/AtSPL3/Athamap oligos_6-8nt_m4 AtSPL3:AtSPL3:Athamap 0.708 0.486 11 16 11 16 0.6875 1.0000 0.6875 D 0
oligos_6-8nt_m4 SPL14/M1561_1.02/CISBP oligos_6-8nt_m4 SPL14:M1561_1.02:CISBP 0.894 0.481 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_6-8nt_m4 SPL10/MA1799.2/JASPAR oligos_6-8nt_m4 SPL10:MA1799.2:JASPAR 0.868 0.473 11 6 6 11 0.5455 0.5455 1.0000 R 4
oligos_6-8nt_m4 SPL7/MA1060.2/JASPAR oligos_6-8nt_m4 SPL7:MA1060.2:JASPAR 0.859 0.469 11 6 6 11 0.5455 0.5455 1.0000 R 5
oligos_6-8nt_m4 SPL11/M1562_1.02/CISBP oligos_6-8nt_m4 SPL11:M1562_1.02:CISBP 0.723 0.465 11 12 9 14 0.6429 0.8182 0.7500 R 2
oligos_6-8nt_m4 SPL11/MA1056.1/JASPAR oligos_6-8nt_m4 SPL11:MA1056.1:JASPAR 0.722 0.464 11 12 9 14 0.6429 0.8182 0.7500 R 2
oligos_6-8nt_m4 MYB52/MA1171.2/JASPAR oligos_6-8nt_m4 MYB52:MA1171.2:JASPAR 0.723 0.460 11 7 7 11 0.6364 0.6364 1.0000 D 3
oligos_6-8nt_m4 SPL14/MA0586.2/JASPAR oligos_6-8nt_m4 SPL14:MA0586.2:JASPAR 0.802 0.459 11 11 8 14 0.5714 0.7273 0.7273 D 3
oligos_6-8nt_m4 bHLH28.DAP/M0159/AthalianaCistrome oligos_6-8nt_m4 bHLH28.DAP:M0159:AthalianaCistrome 0.710 0.456 11 12 9 14 0.6429 0.8182 0.7500 R 2
oligos_6-8nt_m4 GTL1.ampDAP/M0769/AthalianaCistrome oligos_6-8nt_m4 GTL1.ampDAP:M0769:AthalianaCistrome 0.738 0.454 11 10 8 13 0.6154 0.7273 0.8000 R -2
oligos_6-8nt_m4 SPL1.DAP/M0737/AthalianaCistrome oligos_6-8nt_m4 SPL1.DAP:M0737:AthalianaCistrome 0.792 0.452 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_6-8nt_m4 MYB55/MA1041.1/JASPAR oligos_6-8nt_m4 MYB55:MA1041.1:JASPAR 0.775 0.452 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_6-8nt_m4 OsRR22/MA1409.1/JASPAR oligos_6-8nt_m4 OsRR22:MA1409.1:JASPAR 0.731 0.450 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_6-8nt_m4 ppa000682m/M1572_1.02/CISBP oligos_6-8nt_m4 ppa000682m:M1572_1.02:CISBP 0.898 0.449 11 10 7 14 0.5000 0.6364 0.7000 R 4
oligos_6-8nt_m4 AT1G76580/M1564_1.02/CISBP oligos_6-8nt_m4 AT1G76580:M1564_1.02:CISBP 0.716 0.441 11 10 8 13 0.6154 0.7273 0.8000 D 3
oligos_6-8nt_m4 GTL1.DAP/M0771/AthalianaCistrome oligos_6-8nt_m4 GTL1.DAP:M0771:AthalianaCistrome 0.707 0.435 11 10 8 13 0.6154 0.7273 0.8000 R -2
oligos_6-8nt_m4 GT2.ampDAP/M0776/AthalianaCistrome oligos_6-8nt_m4 GT2.ampDAP:M0776:AthalianaCistrome 0.760 0.434 11 11 8 14 0.5714 0.7273 0.7273 R -3
oligos_6-8nt_m4 SPL4/MA1058.2/JASPAR oligos_6-8nt_m4 SPL4:MA1058.2:JASPAR 0.939 0.427 11 5 5 11 0.4545 0.4545 1.0000 R 5
oligos_6-8nt_m4 OsWRKY45/6ir8_A/3D-footprint oligos_6-8nt_m4 OsWRKY45:6ir8_A:3D-footprint 0.848 0.424 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_6-8nt_m4 SPL9.ampDAP/M0733/AthalianaCistrome oligos_6-8nt_m4 SPL9.ampDAP:M0733:AthalianaCistrome 0.731 0.417 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_6-8nt_m4 ANAC034.DAP/M0670/AthalianaCistrome oligos_6-8nt_m4 ANAC034.DAP:M0670:AthalianaCistrome 0.706 0.409 11 19 11 19 0.5789 1.0000 0.5789 R -1
oligos_6-8nt_m4 GT-2/MA1208.2/JASPAR oligos_6-8nt_m4 GT-2:MA1208.2:JASPAR 0.716 0.409 11 11 8 14 0.5714 0.7273 0.7273 D -3
oligos_6-8nt_m4 SPL14/MA0586.1/JASPAR oligos_6-8nt_m4 SPL14:MA0586.1:JASPAR 0.704 0.407 11 19 11 19 0.5789 1.0000 0.5789 D -2
oligos_6-8nt_m4 GTAC/EEAD0169/EEADannot oligos_6-8nt_m4 GTAC:EEAD0169:EEADannot 0.895 0.407 11 5 5 11 0.4545 0.4545 1.0000 D 6
oligos_6-8nt_m4 AT5G47660/MA1365.3/JASPAR oligos_6-8nt_m4 AT5G47660:MA1365.3:JASPAR 0.807 0.404 11 7 6 12 0.5000 0.5455 0.8571 R -1 
 Host name	rsat
 Job started	2025-06-19.091954
 Job done	2025-06-19.091956
 Seconds	1.29
	user	1.29
	system	0.03
	cuser	0.23
;	csystem	0.03