position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092322_2025-06-19.092322_shBOom/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title m6 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092322_2025-06-19.092322_shBOom/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092322_2025-06-19.092322_shBOom/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092322_2025-06-19.092322_shBOom/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 123 Sum of sequence lengths 60922 Min sequence length 0 Max sequence length 1000 Average sequence length 495 Possible positions 60922 Oligonucleotide statistics: Total occurrences 59099 Position interval parameters: Position interval 20 Number of windows 50 Total positions 60922 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 25 490 2 -24 [-479,-460] -469.5 25 500 3 -23 [-459,-440] -449.5 25 500 4 -22 [-439,-420] -429.5 26 505 5 -21 [-419,-400] -409.5 28 537 6 -20 [-399,-380] -389.5 28 560 7 -19 [-379,-360] -369.5 29 564 8 -18 [-359,-340] -349.5 30 581 9 -17 [-339,-320] -329.5 33 625 10 -16 [-319,-300] -309.5 33 660 11 -15 [-299,-280] -289.5 35 673 12 -14 [-279,-260] -269.5 36 708 13 -13 [-259,-240] -249.5 38 742 14 -12 [-239,-220] -229.5 41 803 15 -11 [-219,-200] -209.5 46 863 16 -10 [-199,-180] -189.5 55 1023 17 -9 [-179,-160] -169.5 81 1319 18 -8 [-159,-140] -149.5 102 1895 19 -7 [-139,-120] -129.5 122 2222 20 -6 [-119,-100] -109.5 123 2441 21 -5 [-99,-80] -89.5 123 2460 22 -4 [-79,-60] -69.5 123 2460 23 -3 [-59,-40] -49.5 123 2460 24 -2 [-39,-20] -29.5 123 2460 25 -1 [-19,0] -9.5 123 2460 26 0 [1,20] 10.5 123 2460 27 1 [21,40] 30.5 123 2460 28 2 [41,60] 50.5 123 2460 29 3 [61,80] 70.5 123 2460 30 4 [81,100] 90.5 123 2460 31 5 [101,120] 110.5 122 2440 32 6 [121,140] 130.5 122 2202 33 7 [141,160] 150.5 102 1874 34 8 [161,180] 170.5 75 1291 35 9 [181,200] 190.5 55 1014 36 10 [201,220] 210.5 46 858 37 11 [221,240] 230.5 41 801 38 12 [241,260] 250.5 38 739 39 13 [261,280] 270.5 36 708 40 14 [281,300] 290.5 35 671 41 15 [301,320] 310.5 33 660 42 16 [321,340] 330.5 32 622 43 17 [341,360] 350.5 29 580 44 18 [361,380] 370.5 29 562 45 19 [381,400] 390.5 28 560 46 20 [401,420] 410.5 27 535 47 21 [421,440] 430.5 26 504 48 22 [441,460] 450.5 25 500 49 23 [461,480] 470.5 25 500 50 24 [481,500] 490.5 25 490 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 12878 | 160.4 | 49 | 9.1e-14 | 3.6e-13 | 12.44 | 1 | 89 | 90 | 77 | 89 | 95 | 80 | 94 | 98 | 115 | 105 | 130 | 139 | 140 | 152 | 154 | 210 | 278 | 392 | 427 | 477 | 507 | 545 | 581 | 596 | 547 | 513 | 545 | 545 | 537 | 548 | 525 | 448 | 386 | 258 | 211 | 182 | 169 | 187 | 150 | 136 | 125 | 146 | 114 | 161 | 160 | 131 | 136 | 105 | 113 | 140 |
| g | g | 16286 | 129.3 | 49 | 3.7e-09 | 1.5e-08 | 7.83 | 2 | 139 | 119 | 115 | 147 | 131 | 137 | 110 | 162 | 156 | 178 | 177 | 192 | 200 | 222 | 220 | 280 | 384 | 529 | 654 | 694 | 696 | 628 | 577 | 572 | 601 | 638 | 665 | 681 | 670 | 632 | 673 | 651 | 547 | 369 | 267 | 227 | 206 | 187 | 202 | 221 | 208 | 178 | 183 | 108 | 123 | 120 | 115 | 151 | 128 | 116 |
| a | a | 13216 | 94.9 | 49 | 9.2e-05 | 0.00037 | 3.43 | 3 | 78 | 102 | 106 | 97 | 100 | 109 | 115 | 122 | 131 | 131 | 128 | 136 | 157 | 165 | 177 | 181 | 276 | 433 | 496 | 508 | 507 | 519 | 554 | 600 | 618 | 609 | 546 | 493 | 511 | 552 | 515 | 489 | 408 | 281 | 232 | 188 | 177 | 157 | 156 | 126 | 133 | 129 | 113 | 153 | 151 | 129 | 112 | 100 | 113 | 97 |
| c | c | 16719 | 73.0 | 49 | 1.5e-02 | 0.059 | 1.23 | 4 | 144 | 149 | 162 | 128 | 135 | 121 | 163 | 169 | 176 | 189 | 195 | 178 | 204 | 220 | 240 | 283 | 322 | 443 | 573 | 713 | 676 | 648 | 648 | 614 | 651 | 688 | 704 | 721 | 701 | 684 | 697 | 597 | 533 | 383 | 304 | 253 | 229 | 203 | 200 | 188 | 186 | 149 | 166 | 140 | 126 | 155 | 141 | 144 | 146 | 137 |
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