/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092322_2025-06-19.092322_shBOom/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092322_2025-06-19.092322_shBOom/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title m6 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092322_2025-06-19.092322_shBOom/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092322_2025-06-19.092322_shBOom/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092322_2025-06-19.092322_shBOom/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	123
	Sum of sequence lengths      	60922
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	495
	Possible positions           	60799
 Oligonucleotide statistics:
	Total occurrences    	58952
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	60799
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	25	490
	2	-24	[-479,-460]	-469.5	25	500
	3	-23	[-459,-440]	-449.5	25	500
	4	-22	[-439,-420]	-429.5	26	505
	5	-21	[-419,-400]	-409.5	28	537
	6	-20	[-399,-380]	-389.5	28	560
	7	-19	[-379,-360]	-369.5	29	564
	8	-18	[-359,-340]	-349.5	30	581
	9	-17	[-339,-320]	-329.5	33	625
	10	-16	[-319,-300]	-309.5	33	660
	11	-15	[-299,-280]	-289.5	35	673
	12	-14	[-279,-260]	-269.5	36	708
	13	-13	[-259,-240]	-249.5	38	742
	14	-12	[-239,-220]	-229.5	41	803
	15	-11	[-219,-200]	-209.5	46	863
	16	-10	[-199,-180]	-189.5	55	1023
	17	-9	[-179,-160]	-169.5	81	1319
	18	-8	[-159,-140]	-149.5	102	1895
	19	-7	[-139,-120]	-129.5	122	2222
	20	-6	[-119,-100]	-109.5	123	2441
	21	-5	[-99,-80]	-89.5	123	2460
	22	-4	[-79,-60]	-69.5	123	2460
	23	-3	[-59,-40]	-49.5	123	2460
	24	-2	[-39,-20]	-29.5	123	2460
	25	-1	[-19,0]	-9.5	123	2460
	26	0	[1,20]	10.5	123	2460
	27	1	[21,40]	30.5	123	2460
	28	2	[41,60]	50.5	123	2460
	29	3	[61,80]	70.5	123	2460
	30	4	[81,100]	90.5	123	2459
	31	5	[101,120]	110.5	122	2440
	32	6	[121,140]	130.5	122	2182
	33	7	[141,160]	150.5	102	1847
	34	8	[161,180]	170.5	75	1271
	35	9	[181,200]	190.5	55	1005
	36	10	[201,220]	210.5	46	853
	37	11	[221,240]	230.5	41	798
	38	12	[241,260]	250.5	38	737
	39	13	[261,280]	270.5	36	707
	40	14	[281,300]	290.5	35	669
	41	15	[301,320]	310.5	33	659
	42	16	[321,340]	330.5	32	619
	43	17	[341,360]	350.5	29	580
	44	18	[361,380]	370.5	29	561
	45	19	[381,400]	390.5	28	559
	46	20	[401,420]	410.5	27	534
	47	21	[421,440]	430.5	26	503
	48	22	[441,460]	450.5	25	500
	49	23	[461,480]	470.5	25	500
	50	24	[481,500]	490.5	25	465

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
ta ta 2284 222.2 49 6.6e-24 1.1e-22 21.98 1 17 15 12 9 11 15 14 16 18 16 16 25 20 20 27 32 56 82 69 56 70 97 126 157 116 102 74 87 89 124 97 91 67 30 42 29 28 26 30 22 18 22 18 43 42 37 13 10 8 23
gg gg 4284 202.5 49 1.5e-20 2.3e-19 18.63 2 47 26 25 49 32 46 28 54 48 49 44 55 60 66 53 90 110 145 190 205 198 148 146 140 144 140 151 168 154 151 178 184 154 101 73 51 47 49 64 85 64 48 59 17 20 19 18 41 33 17
tt tt 3237 163.1 49 3.5e-14 5.7e-13 12.25 3 22 18 14 17 18 18 21 23 25 12 27 29 30 36 34 48 63 90 96 136 122 141 175 144 160 137 152 133 128 138 125 103 86 58 58 44 51 58 36 32 27 37 33 48 50 33 47 27 44 33
cc cc 4265 103.7 49 8.4e-06 0.00013 3.87 4 48 40 48 36 30 25 47 56 55 56 55 46 67 64 71 84 78 99 151 215 195 173 159 146 151 167 162 168 171 169 166 125 125 89 85 73 51 56 53 56 51 36 49 30 28 40 25 28 40 27
at at 2825 102.5 49 1.2e-05 0.00019 3.72 5 16 21 16 16 18 11 22 21 31 23 32 34 35 36 29 31 60 102 92 118 125 119 128 164 124 110 114 103 110 133 106 78 85 55 47 41 39 43 31 28 26 38 23 30 45 30 18 12 27 29
ct ct 3641 92.8 49 1.6e-04 0.0025 2.60 6 31 35 27 26 28 26 26 29 33 31 37 36 33 37 47 69 68 98 108 122 129 148 157 148 134 158 156 178 163 150 171 135 126 77 58 50 43 48 40 31 36 31 37 49 34 43 47 38 30 49
cg cg 4170 87.7 49 5.7e-04 0.0092 2.04 7 35 39 34 30 31 28 34 40 30 49 44 42 49 59 58 64 82 120 161 180 180 154 139 122 142 190 191 204 178 179 169 174 143 98 70 66 60 41 47 56 57 45 43 22 21 31 31 42 35 31
aa aa 3236 85.4 49 9.9e-04 0.016 1.80 8 15 27 25 27 16 30 29 31 28 33 25 25 47 37 43 39 60 114 135 128 124 123 139 138 162 174 142 107 125 118 115 135 98 67 54 50 39 35 35 28 36 34 24 48 37 31 29 25 30 20
ga ga 3050 65.3 49 5.9e-02 0.95 0.02 9 17 22 19 23 30 22 13 31 27 29 31 29 39 47 39 39 68 110 129 129 140 127 104 104 114 157 139 125 116 118 115 96 115 65 47 43 38 38 30 31 31 35 36 25 30 21 27 33 28 29
tc tc 3112 65.3 49 5.9e-02 0.95 0.02 10 17 27 22 20 24 22 32 28 33 29 31 30 34 41 43 51 57 75 97 122 123 124 117 129 115 111 145 163 141 132 126 116 102 68 47 51 37 48 37 32 29 28 25 33 28 29 34 35 32 40
gc gc 5774 60.0 49 1.3e-01 2.1 -0.33 11 53 56 52 41 41 44 45 49 53 62 67 68 61 68 84 89 123 172 217 251 230 204 208 192 211 241 252 256 260 237 258 234 184 137 96 86 83 66 64 64 75 55 60 37 43 53 44 52 51 45
ac ac 3539 57.5 49 1.9e-01 3 -0.48 12 27 26 39 31 37 29 42 35 37 40 40 37 37 46 48 61 65 99 117 122 134 138 157 152 175 175 145 124 131 151 140 118 113 85 73 46 55 35 43 34 34 29 28 38 32 33 34 28 29 15
ca ca 4602 56.5 49 2.2e-01 3.4 -0.54 13 30 35 53 36 46 42 56 44 58 52 59 54 55 60 63 66 94 126 153 196 171 173 193 198 224 173 195 171 188 186 191 156 127 112 90 62 74 58 60 45 42 37 37 39 43 40 38 36 41 24
gt gt 3133 46.3 49 5.9e-01 9.4 -0.97 14 22 15 19 33 27 25 24 27 28 38 34 40 40 40 43 62 82 101 118 109 128 149 119 136 132 100 123 132 140 126 122 129 85 60 46 45 38 34 44 41 38 39 28 29 29 27 26 25 16 20
tg tg 4212 45.2 49 6.3e-01 10 -1.00 15 33 30 29 43 42 25 27 31 38 48 56 54 56 55 50 79 102 145 165 162 191 183 163 166 156 163 173 162 178 154 177 137 129 98 62 56 53 54 47 49 49 57 38 36 40 32 41 33 29 36
ag ag 3588 42.4 49 7.3e-01 12 -1.07 16 20 28 26 23 27 39 22 35 35 35 31 40 38 46 57 50 91 118 152 140 123 139 130 146 157 150 145 159 145 149 153 154 108 71 57 51 42 43 46 35 37 28 38 37 37 35 31 35 27 27 
 Host name	rsat
 Job started	2025-06-19.092326
 Job done	2025-06-19.092326
 Seconds	0.46
	user	0.46
	system	0.01
	cuser	0
;	csystem	0