position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092718_2025-06-19.092718_Z1kkIg/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title m7 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092718_2025-06-19.092718_Z1kkIg/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092718_2025-06-19.092718_Z1kkIg/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092718_2025-06-19.092718_Z1kkIg/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 123 Sum of sequence lengths 35408 Min sequence length 0 Max sequence length 1000 Average sequence length 287 Possible positions 35408 Oligonucleotide statistics: Total occurrences 32249 Position interval parameters: Position interval 20 Number of windows 50 Total positions 35408 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 13 260 2 -24 [-479,-460] -469.5 13 260 3 -23 [-459,-440] -449.5 13 260 4 -22 [-439,-420] -429.5 13 260 5 -21 [-419,-400] -409.5 13 260 6 -20 [-399,-380] -389.5 13 260 7 -19 [-379,-360] -369.5 13 260 8 -18 [-359,-340] -349.5 15 289 9 -17 [-339,-320] -329.5 16 314 10 -16 [-319,-300] -309.5 19 360 11 -15 [-299,-280] -289.5 20 394 12 -14 [-279,-260] -269.5 21 408 13 -13 [-259,-240] -249.5 21 420 14 -12 [-239,-220] -229.5 24 457 15 -11 [-219,-200] -209.5 29 528 16 -10 [-199,-180] -189.5 30 590 17 -9 [-179,-160] -169.5 36 688 18 -8 [-159,-140] -149.5 41 763 19 -7 [-139,-120] -129.5 42 826 20 -6 [-119,-100] -109.5 45 856 21 -5 [-99,-80] -89.5 57 965 22 -4 [-79,-60] -69.5 73 1305 23 -3 [-59,-40] -49.5 112 2005 24 -2 [-39,-20] -29.5 123 2309 25 -1 [-19,0] -9.5 123 2460 26 0 [1,20] 10.5 123 2460 27 1 [21,40] 30.5 123 2298 28 2 [41,60] 50.5 112 1980 29 3 [61,80] 70.5 73 1285 30 4 [81,100] 90.5 56 949 31 5 [101,120] 110.5 45 852 32 6 [121,140] 130.5 42 824 33 7 [141,160] 150.5 41 757 34 8 [161,180] 170.5 36 679 35 9 [181,200] 190.5 30 590 36 10 [201,220] 210.5 29 522 37 11 [221,240] 230.5 24 454 38 12 [241,260] 250.5 21 420 39 13 [261,280] 270.5 21 406 40 14 [281,300] 290.5 20 393 41 15 [301,320] 310.5 19 360 42 16 [321,340] 330.5 16 314 43 17 [341,360] 350.5 15 288 44 18 [361,380] 370.5 13 260 45 19 [381,400] 390.5 13 260 46 20 [401,420] 410.5 13 260 47 21 [421,440] 430.5 13 260 48 22 [441,460] 450.5 13 260 49 23 [461,480] 470.5 13 260 50 24 [481,500] 490.5 13 260 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 6855 | 102.1 | 49 | 1.3e-05 | 5.4e-05 | 4.27 | 1 | 50 | 56 | 46 | 46 | 44 | 27 | 40 | 61 | 54 | 76 | 56 | 66 | 59 | 71 | 98 | 102 | 135 | 133 | 130 | 153 | 160 | 257 | 430 | 482 | 511 | 521 | 478 | 455 | 276 | 166 | 136 | 169 | 163 | 128 | 122 | 94 | 88 | 76 | 77 | 73 | 66 | 65 | 55 | 42 | 41 | 52 | 40 | 50 | 43 | 36 |
| t | t | 6614 | 95.6 | 49 | 7.7e-05 | 0.00031 | 3.51 | 2 | 40 | 39 | 44 | 55 | 42 | 53 | 38 | 54 | 50 | 56 | 85 | 75 | 71 | 69 | 97 | 114 | 145 | 136 | 138 | 161 | 171 | 283 | 406 | 425 | 435 | 488 | 514 | 414 | 261 | 196 | 142 | 140 | 144 | 135 | 107 | 103 | 77 | 73 | 66 | 63 | 58 | 46 | 49 | 44 | 38 | 30 | 33 | 40 | 34 | 37 |
| c | c | 9557 | 88.7 | 49 | 4.5e-04 | 0.0018 | 2.75 | 3 | 59 | 59 | 57 | 52 | 71 | 72 | 65 | 63 | 86 | 91 | 106 | 106 | 105 | 123 | 138 | 190 | 193 | 237 | 265 | 242 | 277 | 328 | 487 | 603 | 687 | 686 | 658 | 605 | 362 | 256 | 245 | 219 | 190 | 182 | 177 | 139 | 125 | 112 | 96 | 91 | 84 | 78 | 53 | 67 | 77 | 62 | 63 | 47 | 64 | 57 |
| g | g | 9223 | 63.4 | 49 | 8.1e-02 | 0.32 | 0.49 | 4 | 71 | 66 | 73 | 67 | 63 | 68 | 77 | 71 | 84 | 86 | 87 | 101 | 116 | 114 | 124 | 139 | 175 | 197 | 213 | 224 | 280 | 342 | 546 | 655 | 714 | 675 | 568 | 433 | 326 | 253 | 249 | 216 | 188 | 178 | 144 | 146 | 105 | 113 | 112 | 106 | 92 | 65 | 71 | 66 | 64 | 70 | 64 | 63 | 53 | 50 |
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