/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092718_2025-06-19.092718_Z1kkIg/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092718_2025-06-19.092718_Z1kkIg/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title m7 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092718_2025-06-19.092718_Z1kkIg/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092718_2025-06-19.092718_Z1kkIg/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092718_2025-06-19.092718_Z1kkIg/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	123
	Sum of sequence lengths      	35408
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	287
	Possible positions           	35285
 Oligonucleotide statistics:
	Total occurrences    	32113
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	35285
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	13	260
	2	-24	[-479,-460]	-469.5	13	260
	3	-23	[-459,-440]	-449.5	13	260
	4	-22	[-439,-420]	-429.5	13	260
	5	-21	[-419,-400]	-409.5	13	260
	6	-20	[-399,-380]	-389.5	13	260
	7	-19	[-379,-360]	-369.5	13	260
	8	-18	[-359,-340]	-349.5	15	289
	9	-17	[-339,-320]	-329.5	16	314
	10	-16	[-319,-300]	-309.5	19	360
	11	-15	[-299,-280]	-289.5	20	394
	12	-14	[-279,-260]	-269.5	21	408
	13	-13	[-259,-240]	-249.5	21	420
	14	-12	[-239,-220]	-229.5	24	457
	15	-11	[-219,-200]	-209.5	29	528
	16	-10	[-199,-180]	-189.5	30	590
	17	-9	[-179,-160]	-169.5	36	688
	18	-8	[-159,-140]	-149.5	41	763
	19	-7	[-139,-120]	-129.5	42	826
	20	-6	[-119,-100]	-109.5	45	856
	21	-5	[-99,-80]	-89.5	57	965
	22	-4	[-79,-60]	-69.5	73	1305
	23	-3	[-59,-40]	-49.5	112	2005
	24	-2	[-39,-20]	-29.5	123	2309
	25	-1	[-19,0]	-9.5	123	2460
	26	0	[1,20]	10.5	123	2460
	27	1	[21,40]	30.5	123	2287
	28	2	[41,60]	50.5	112	1941
	29	3	[61,80]	70.5	73	1268
	30	4	[81,100]	90.5	56	938
	31	5	[101,120]	110.5	44	849
	32	6	[121,140]	130.5	42	823
	33	7	[141,160]	150.5	41	752
	34	8	[161,180]	170.5	36	673
	35	9	[181,200]	190.5	30	589
	36	10	[201,220]	210.5	29	517
	37	11	[221,240]	230.5	24	451
	38	12	[241,260]	250.5	21	420
	39	13	[261,280]	270.5	21	405
	40	14	[281,300]	290.5	20	392
	41	15	[301,320]	310.5	19	357
	42	16	[321,340]	330.5	16	313
	43	17	[341,360]	350.5	15	286
	44	18	[361,380]	370.5	13	260
	45	19	[381,400]	390.5	13	260
	46	20	[401,420]	410.5	13	260
	47	21	[421,440]	430.5	13	260
	48	22	[441,460]	450.5	13	260
	49	23	[461,480]	470.5	13	260
	50	24	[481,500]	490.5	13	247

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
cc cc 2766 120.6 49 5.7e-08 9.2e-07 6.04 1 15 19 11 12 26 22 12 14 22 26 32 31 26 40 38 78 65 77 105 70 75 96 121 166 192 207 175 179 116 82 68 57 44 50 51 46 37 37 26 16 24 23 15 21 17 13 17 11 21 22
ta ta 1074 101.6 49 1.5e-05 0.00024 3.62 2 8 9 9 7 8 7 4 11 4 11 13 15 8 9 11 12 18 21 16 18 23 55 95 53 52 79 89 92 50 23 19 28 27 22 17 12 16 9 10 12 15 7 11 3 5 5 5 8 7 6
aa aa 1542 97.3 49 5.0e-05 0.00079 3.10 3 13 10 13 8 11 5 3 13 12 16 6 14 12 8 23 19 33 23 21 32 30 57 106 133 123 135 106 99 67 35 20 44 41 27 31 25 14 20 17 15 14 18 11 7 7 10 8 9 10 8
tt tt 1482 91.2 49 2.4e-04 0.0038 2.42 4 10 5 6 16 5 8 10 16 8 9 22 16 17 12 21 30 35 28 33 38 30 62 87 98 95 105 143 97 59 52 32 27 30 34 28 26 13 16 15 16 8 6 9 12 8 5 4 11 3 6
at at 1443 85.0 49 1.1e-03 0.017 1.76 5 7 15 6 10 13 4 6 5 9 19 17 13 10 15 17 17 33 26 27 27 24 61 101 91 118 125 112 96 64 38 23 35 36 29 26 17 19 16 10 11 17 14 16 5 7 7 6 10 9 4
gg gg 2514 82.0 49 2.2e-03 0.035 1.46 6 25 21 27 16 19 18 25 16 21 24 15 32 37 28 24 36 34 46 59 61 81 96 155 189 223 189 128 99 92 64 69 60 48 45 44 46 34 29 33 30 25 14 19 17 17 22 17 17 15 13
ct ct 1860 70.7 49 2.3e-02 0.37 0.43 7 8 7 15 9 14 21 9 13 15 14 27 25 19 22 29 29 40 39 40 55 67 67 110 108 127 126 137 147 67 46 40 40 43 34 33 30 28 15 18 17 13 11 6 15 13 8 14 8 10 12
cg cg 2334 60.8 49 1.2e-01 1.9 -0.28 8 14 11 10 15 16 18 21 18 24 18 22 29 31 26 32 31 46 66 60 61 73 78 126 149 177 167 167 108 79 65 80 59 43 47 41 31 22 34 27 36 23 17 11 14 23 14 20 13 13 8
tc tc 1626 53.7 49 3.0e-01 4.8 -0.68 9 10 9 12 8 9 14 5 12 8 11 22 16 20 13 26 32 32 37 39 49 49 59 87 104 126 123 135 108 59 43 38 36 27 37 27 25 20 17 15 18 12 15 7 7 9 7 7 8 9 8
ga ga 1643 51.3 49 3.8e-01 6.1 -0.79 10 11 12 6 14 7 7 10 20 8 14 15 14 14 17 27 19 38 34 35 43 48 58 102 117 141 125 96 93 60 47 38 39 32 27 23 23 21 20 30 20 14 13 13 13 6 12 16 15 10 6
ac ac 1863 49.5 49 4.5e-01 7.3 -0.86 11 9 11 14 12 12 11 21 20 20 21 15 22 17 26 27 34 32 44 38 47 52 69 102 111 117 124 128 135 67 46 44 41 45 29 40 22 34 21 23 23 11 17 9 17 17 18 14 10 15 9
tg tg 2380 46.7 49 5.7e-01 9.1 -0.96 12 12 16 17 24 20 24 19 15 30 24 28 28 26 35 39 40 60 50 50 56 68 106 136 170 162 181 143 104 85 73 52 48 58 41 35 38 26 31 25 17 20 18 21 22 16 12 17 13 15 14
gt gt 1784 45.2 49 6.3e-01 10 -1.00 13 15 12 19 18 14 16 17 17 19 17 17 21 22 24 27 33 40 37 40 38 53 87 102 125 95 129 116 76 64 58 43 35 39 36 24 28 15 26 24 18 19 13 19 12 9 11 8 11 13 13
ca ca 2564 44.6 49 6.5e-01 10 -1.02 14 22 22 21 16 15 11 23 18 25 33 25 21 28 35 39 52 42 55 60 55 62 87 130 180 190 186 177 161 97 61 56 63 60 50 51 31 36 26 24 22 24 26 20 17 24 27 12 15 19 12
gc gc 3273 43.9 49 6.8e-01 11 -1.04 15 20 21 21 19 23 27 25 18 36 31 40 34 43 45 46 51 63 79 79 82 98 100 187 224 255 232 227 164 109 83 99 82 68 69 53 48 35 38 25 38 34 25 20 24 32 25 23 20 15 18
ag ag 1965 43.1 49 7.1e-01 11 -1.06 16 21 20 13 16 8 7 10 23 13 20 18 16 20 22 31 32 37 39 44 46 54 70 121 147 153 137 128 110 73 43 48 49 39 40 25 29 21 19 27 23 24 16 19 13 10 17 12 21 9 12 
 Host name	rsat
 Job started	2025-06-19.092721
 Job done	2025-06-19.092722
 Seconds	0.35
	user	0.35
	system	0.02
	cuser	0.01
;	csystem	0