position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title m8 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 115 Sum of sequence lengths 35916 Min sequence length 0 Max sequence length 1000 Average sequence length 312 Possible positions 35916 Oligonucleotide statistics: Total occurrences 34667 Position interval parameters: Position interval 20 Number of windows 50 Total positions 35916 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 16 312 2 -24 [-479,-460] -469.5 17 334 3 -23 [-459,-440] -449.5 18 352 4 -22 [-439,-420] -429.5 18 360 5 -21 [-419,-400] -409.5 19 364 6 -20 [-399,-380] -389.5 19 380 7 -19 [-379,-360] -369.5 20 384 8 -18 [-359,-340] -349.5 21 420 9 -17 [-339,-320] -329.5 21 420 10 -16 [-319,-300] -309.5 24 464 11 -15 [-299,-280] -289.5 24 480 12 -14 [-279,-260] -269.5 25 481 13 -13 [-259,-240] -249.5 27 536 14 -12 [-239,-220] -229.5 28 556 15 -11 [-219,-200] -209.5 28 560 16 -10 [-199,-180] -189.5 29 580 17 -9 [-179,-160] -169.5 32 607 18 -8 [-159,-140] -149.5 36 697 19 -7 [-139,-120] -129.5 37 732 20 -6 [-119,-100] -109.5 37 740 21 -5 [-99,-80] -89.5 42 791 22 -4 [-79,-60] -69.5 69 1142 23 -3 [-59,-40] -49.5 105 1824 24 -2 [-39,-20] -29.5 115 2186 25 -1 [-19,0] -9.5 115 2300 26 0 [1,20] 10.5 115 2300 27 1 [21,40] 30.5 115 2176 28 2 [41,60] 50.5 105 1799 29 3 [61,80] 70.5 68 1113 30 4 [81,100] 90.5 42 789 31 5 [101,120] 110.5 37 740 32 6 [121,140] 130.5 37 731 33 7 [141,160] 150.5 36 694 34 8 [161,180] 170.5 32 602 35 9 [181,200] 190.5 29 580 36 10 [201,220] 210.5 28 560 37 11 [221,240] 230.5 28 554 38 12 [241,260] 250.5 27 534 39 13 [261,280] 270.5 24 480 40 14 [281,300] 290.5 24 480 41 15 [301,320] 310.5 24 462 42 16 [321,340] 330.5 21 420 43 17 [341,360] 350.5 21 420 44 18 [361,380] 370.5 20 384 45 19 [381,400] 390.5 19 380 46 20 [401,420] 410.5 19 362 47 21 [421,440] 430.5 18 360 48 22 [441,460] 450.5 18 350 49 23 [461,480] 470.5 17 334 50 24 [481,500] 490.5 16 310 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 9975 | 90.1 | 49 | 3.2e-04 | 0.0013 | 2.90 | 1 | 88 | 106 | 107 | 105 | 88 | 118 | 127 | 143 | 130 | 136 | 152 | 148 | 115 | 172 | 177 | 147 | 155 | 208 | 226 | 225 | 250 | 299 | 434 | 546 | 648 | 681 | 649 | 503 | 295 | 209 | 187 | 174 | 177 | 148 | 150 | 164 | 149 | 128 | 128 | 143 | 123 | 116 | 124 | 110 | 100 | 86 | 101 | 98 | 100 | 82 |
| a | a | 7331 | 74.7 | 49 | 1.0e-02 | 0.042 | 1.38 | 2 | 65 | 56 | 69 | 53 | 65 | 71 | 74 | 81 | 79 | 89 | 89 | 88 | 93 | 100 | 101 | 104 | 112 | 121 | 134 | 141 | 138 | 270 | 443 | 487 | 484 | 442 | 464 | 404 | 236 | 172 | 141 | 142 | 145 | 129 | 127 | 126 | 122 | 106 | 97 | 104 | 93 | 90 | 81 | 93 | 71 | 73 | 59 | 77 | 59 | 71 |
| t | t | 7219 | 68.4 | 49 | 3.5e-02 | 0.14 | 0.85 | 3 | 64 | 55 | 62 | 70 | 83 | 75 | 76 | 81 | 80 | 101 | 95 | 100 | 117 | 95 | 86 | 107 | 117 | 127 | 141 | 152 | 149 | 242 | 404 | 452 | 460 | 438 | 456 | 402 | 249 | 126 | 121 | 154 | 143 | 121 | 109 | 95 | 98 | 104 | 112 | 93 | 108 | 89 | 77 | 80 | 99 | 79 | 89 | 66 | 64 | 56 |
| g | g | 10142 | 53.5 | 49 | 3.1e-01 | 1.2 | -0.09 | 4 | 77 | 97 | 94 | 112 | 108 | 116 | 107 | 115 | 131 | 138 | 144 | 131 | 171 | 131 | 138 | 162 | 176 | 215 | 211 | 202 | 227 | 291 | 498 | 641 | 640 | 665 | 566 | 470 | 312 | 238 | 212 | 191 | 189 | 184 | 174 | 155 | 165 | 179 | 143 | 140 | 131 | 105 | 118 | 98 | 110 | 124 | 93 | 95 | 111 | 101 |
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