/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title m8 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	115
	Sum of sequence lengths      	35916
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	312
	Possible positions           	35801
 Oligonucleotide statistics:
	Total occurrences    	34538
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	35801
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	16	312
	2	-24	[-479,-460]	-469.5	17	334
	3	-23	[-459,-440]	-449.5	18	352
	4	-22	[-439,-420]	-429.5	18	360
	5	-21	[-419,-400]	-409.5	19	364
	6	-20	[-399,-380]	-389.5	19	380
	7	-19	[-379,-360]	-369.5	20	384
	8	-18	[-359,-340]	-349.5	21	420
	9	-17	[-339,-320]	-329.5	21	420
	10	-16	[-319,-300]	-309.5	24	464
	11	-15	[-299,-280]	-289.5	24	480
	12	-14	[-279,-260]	-269.5	25	481
	13	-13	[-259,-240]	-249.5	27	536
	14	-12	[-239,-220]	-229.5	28	556
	15	-11	[-219,-200]	-209.5	28	560
	16	-10	[-199,-180]	-189.5	29	580
	17	-9	[-179,-160]	-169.5	32	607
	18	-8	[-159,-140]	-149.5	36	697
	19	-7	[-139,-120]	-129.5	37	732
	20	-6	[-119,-100]	-109.5	37	740
	21	-5	[-99,-80]	-89.5	42	791
	22	-4	[-79,-60]	-69.5	69	1142
	23	-3	[-59,-40]	-49.5	105	1824
	24	-2	[-39,-20]	-29.5	115	2186
	25	-1	[-19,0]	-9.5	115	2300
	26	0	[1,20]	10.5	115	2300
	27	1	[21,40]	30.5	115	2166
	28	2	[41,60]	50.5	105	1762
	29	3	[61,80]	70.5	66	1087
	30	4	[81,100]	90.5	42	784
	31	5	[101,120]	110.5	37	740
	32	6	[121,140]	130.5	37	730
	33	7	[141,160]	150.5	36	690
	34	8	[161,180]	170.5	32	599
	35	9	[181,200]	190.5	29	579
	36	10	[201,220]	210.5	28	560
	37	11	[221,240]	230.5	28	553
	38	12	[241,260]	250.5	27	531
	39	13	[261,280]	270.5	24	480
	40	14	[281,300]	290.5	24	480
	41	15	[301,320]	310.5	24	459
	42	16	[321,340]	330.5	21	420
	43	17	[341,360]	350.5	21	419
	44	18	[361,380]	370.5	20	383
	45	19	[381,400]	390.5	19	380
	46	20	[401,420]	410.5	19	361
	47	21	[421,440]	430.5	18	360
	48	22	[441,460]	450.5	18	349
	49	23	[461,480]	470.5	17	333
	50	24	[481,500]	490.5	16	294

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
cc cc 2824 108.7 49 2.1e-06 3.3e-05 4.48 1 25 36 36 38 22 36 41 43 36 41 51 46 24 57 59 41 49 70 65 59 82 76 99 133 182 207 182 127 71 62 59 45 55 40 34 43 30 35 39 41 34 34 40 27 29 21 35 30 35 22
tt tt 1661 104.2 49 7.4e-06 0.00012 3.93 2 11 10 11 13 14 23 17 16 15 24 25 18 29 14 12 22 29 28 27 40 32 46 106 119 108 103 127 88 64 24 29 42 28 23 21 21 18 22 31 23 29 30 13 12 28 13 32 13 10 8
gg gg 2849 89.6 49 3.6e-04 0.0057 2.24 3 22 30 21 33 26 34 36 29 37 36 46 30 61 32 36 50 59 61 57 45 63 81 136 189 170 210 133 100 86 68 64 65 55 54 50 50 49 65 50 35 38 32 36 22 32 39 19 21 30 26
aa aa 1694 88.2 49 5.0e-04 0.008 2.10 4 12 13 16 5 13 18 12 18 19 20 19 20 24 22 19 21 22 17 24 30 26 72 121 134 112 98 122 92 51 34 40 36 32 28 26 35 27 22 18 25 19 25 19 27 15 11 14 22 11 16
ta ta 1145 80.7 49 2.9e-03 0.046 1.33 5 14 4 10 10 14 6 9 12 10 21 20 17 21 14 14 13 20 17 20 20 18 50 74 75 59 51 61 85 42 21 20 23 32 15 19 15 18 18 16 15 13 12 10 17 19 15 13 11 7 15
ga ga 1790 69.4 49 2.9e-02 0.46 0.33 6 14 15 21 15 21 22 15 16 18 16 20 19 21 24 19 22 28 35 32 30 37 52 112 121 126 99 94 85 58 58 40 28 36 52 29 26 32 30 26 30 26 15 25 14 18 24 16 19 18 21
at at 1533 68.7 49 3.3e-02 0.53 0.27 7 15 8 15 10 18 9 10 15 21 14 12 14 19 22 20 24 22 30 37 27 21 76 85 94 110 108 100 83 44 36 24 31 32 34 26 22 17 26 24 15 16 24 16 24 20 19 10 12 11 11
cg cg 2500 59.2 49 1.5e-01 2.4 -0.38 8 18 25 27 25 22 28 25 36 45 34 41 38 39 39 36 35 37 53 68 64 66 63 106 131 163 157 166 122 77 61 53 33 38 43 36 50 40 32 25 38 29 30 27 29 21 25 26 24 27 27
tc tc 1719 52.9 49 3.3e-01 5.2 -0.72 9 16 16 16 19 16 19 20 25 24 20 22 20 21 37 21 22 18 30 39 36 44 65 83 85 125 117 133 89 56 28 24 34 30 33 24 28 27 15 25 21 28 19 25 21 17 14 15 16 12 9
gt gt 2020 51.3 49 3.8e-01 6.1 -0.79 10 13 21 13 27 25 16 23 24 24 31 31 34 44 23 23 35 34 44 37 43 49 54 103 113 120 108 113 108 66 38 39 41 41 35 35 25 33 33 27 28 34 22 19 21 27 24 27 21 29 22
ca ca 2662 49.4 49 4.6e-01 7.3 -0.86 11 23 26 21 21 18 26 37 35 30 30 32 32 28 40 49 47 38 61 54 61 57 91 130 157 189 187 183 142 76 54 44 58 40 36 55 44 48 36 35 37 33 37 28 32 22 21 19 26 23 13
ac ac 1953 46.6 49 5.7e-01 9.1 -0.96 12 22 19 16 11 15 18 33 28 18 21 35 33 24 29 34 28 38 32 37 45 45 64 108 114 118 110 111 105 62 42 38 32 37 29 32 39 42 24 28 29 32 24 21 22 16 19 17 19 17 21
ct ct 1962 45.0 49 6.3e-01 10 -1.01 13 22 19 23 21 26 28 24 29 19 31 28 32 24 36 33 24 31 24 39 41 45 69 99 125 113 130 118 107 67 30 31 38 43 27 25 27 31 24 29 27 26 15 28 22 28 19 20 18 15 12
gc gc 3462 41.4 49 7.7e-01 12 -1.09 14 28 31 39 37 36 44 33 46 52 55 47 48 45 52 60 55 55 75 85 84 77 104 147 218 223 248 223 168 101 74 68 57 57 43 60 54 51 51 40 47 32 36 38 41 33 37 31 34 34 28
tg tg 2653 41.2 49 7.8e-01 12 -1.10 15 22 25 25 28 39 27 30 28 31 36 28 44 46 30 39 50 50 52 55 56 55 81 141 173 168 167 131 130 76 52 48 54 51 49 45 31 34 48 40 34 36 28 29 29 35 36 29 25 35 22
ag ag 2111 38.6 49 8.6e-01 14 -1.14 16 16 16 22 27 19 26 19 20 21 34 23 21 26 26 27 31 30 42 36 39 46 58 128 145 144 125 128 111 68 57 39 43 43 38 42 30 36 33 27 35 26 17 25 20 20 24 18 24 19 21 
 Host name	rsat
 Job started	2025-06-19.092839
 Job done	2025-06-19.092840
 Seconds	0.31
	user	0.31
	system	0.02
	cuser	0.01
;	csystem	0