/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1.tf
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.092836_2025-06-19.092836_d6nk31/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1.tf
		file1	1	13	45
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m1 LEC2/MA0581.1/JASPAR oligos_6-8nt_m1 LEC2:MA0581.1:JASPAR 0.778 0.658 13 11 11 13 0.8462 0.8462 1.0000 D 2
oligos_6-8nt_m1 FUS3.DAP/M0003/AthalianaCistrome oligos_6-8nt_m1 FUS3.DAP:M0003:AthalianaCistrome 0.732 0.634 13 15 13 15 0.8667 1.0000 0.8667 D -1
oligos_6-8nt_m1 AtLEC2/AtLEC2/Athamap oligos_6-8nt_m1 AtLEC2:AtLEC2:Athamap 0.821 0.632 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_6-8nt_m1 FUS3/MA0565.2/JASPAR oligos_6-8nt_m1 FUS3:MA0565.2:JASPAR 0.736 0.566 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6-8nt_m1 ABI3/ABI3/Athamap oligos_6-8nt_m1 ABI3:ABI3:Athamap 0.765 0.530 13 9 9 13 0.6923 0.6923 1.0000 D 1
oligos_6-8nt_m1 FUS3/FUS3/Athamap oligos_6-8nt_m1 FUS3:FUS3:Athamap 0.816 0.502 13 8 8 13 0.6154 0.6154 1.0000 D 3
oligos_6-8nt_m1 FUS3/MA0565.1/JASPAR oligos_6-8nt_m1 FUS3:MA0565.1:JASPAR 0.713 0.493 13 9 9 13 0.6923 0.6923 1.0000 R 1
oligos_6-8nt_m1 ABI3/MA0564.1/JASPAR oligos_6-8nt_m1 ABI3:MA0564.1:JASPAR 0.703 0.487 13 9 9 13 0.6923 0.6923 1.0000 D 1
oligos_6-8nt_m1 LEC2/M0146_1.02/CISBP oligos_6-8nt_m1 LEC2:M0146_1.02:CISBP 0.727 0.448 13 8 8 13 0.6154 0.6154 1.0000 R 3
oligos_6-8nt_m1 B3/6j9b_A/3D-footprint oligos_6-8nt_m1 B3:6j9b_A:3D-footprint 0.969 0.447 13 6 6 13 0.4615 0.4615 1.0000 D 4
oligos_6-8nt_m1 LEC2/MA0581.2/JASPAR oligos_6-8nt_m1 LEC2:MA0581.2:JASPAR 0.967 0.446 13 6 6 13 0.4615 0.4615 1.0000 D 4
oligos_6-8nt_m1 FUS3/MA0565.3/JASPAR oligos_6-8nt_m1 FUS3:MA0565.3:JASPAR 0.820 0.442 13 7 7 13 0.5385 0.5385 1.0000 D 3
oligos_6-8nt_m1 B3/5yzy_C/3D-footprint oligos_6-8nt_m1 B3:5yzy_C:3D-footprint 0.956 0.441 13 6 6 13 0.4615 0.4615 1.0000 D 4
oligos_6-8nt_m1 B3/5yzz_C/3D-footprint oligos_6-8nt_m1 B3:5yzz_C:3D-footprint 0.955 0.441 13 6 6 13 0.4615 0.4615 1.0000 D 4
oligos_6-8nt_m1 B3/6j9c_D/3D-footprint oligos_6-8nt_m1 B3:6j9c_D:3D-footprint 0.949 0.438 13 6 6 13 0.4615 0.4615 1.0000 R 4
oligos_6-8nt_m1 B3/6j9a_A/3D-footprint oligos_6-8nt_m1 B3:6j9a_A:3D-footprint 0.940 0.434 13 6 6 13 0.4615 0.4615 1.0000 D 4
oligos_6-8nt_m1 NAC037/MA2047.2/JASPAR oligos_6-8nt_m1 NAC037:MA2047.2:JASPAR 0.775 0.417 13 7 7 13 0.5385 0.5385 1.0000 D 4
oligos_6-8nt_m1 NAC/3swm_B/3D-footprint oligos_6-8nt_m1 NAC:3swm_B:3D-footprint 0.884 0.408 13 6 6 13 0.4615 0.4615 1.0000 D 4
oligos_6-8nt_m1 NAC101/MA2050.2/JASPAR oligos_6-8nt_m1 NAC101:MA2050.2:JASPAR 0.752 0.405 13 7 7 13 0.5385 0.5385 1.0000 D 4
oligos_6-8nt_m1 SMB/MA2010.2/JASPAR oligos_6-8nt_m1 SMB:MA2010.2:JASPAR 0.751 0.405 13 7 7 13 0.5385 0.5385 1.0000 D 4
oligos_6-8nt_m1 NAC007/MA2044.2/JASPAR oligos_6-8nt_m1 NAC007:MA2044.2:JASPAR 0.748 0.403 13 7 7 13 0.5385 0.5385 1.0000 D 4
oligos_6-8nt_m1 NAC076/MA2036.2/JASPAR oligos_6-8nt_m1 NAC076:MA2036.2:JASPAR 0.747 0.402 13 7 7 13 0.5385 0.5385 1.0000 D 4 
 Host name	rsat
 Job started	2025-06-19.092852
 Job done	2025-06-19.092854
 Seconds	1.3
	user	1.3
	system	0.06
	cuser	0.23
;	csystem	0.02