position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title m10 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 92 Sum of sequence lengths 24119 Min sequence length 0 Max sequence length 1000 Average sequence length 262 Possible positions 24119 Sequences: # length ID 1 110 CHLRE_16g650650v5 2 154 CHLRE_02g111050v5 3 734 CHLRE_04g226150v5 4 48 CHLRE_16g681578v5 5 100 CHLRE_06g249300v5 6 173 CHLRE_01g011901v5 7 110 CHLRE_10g459550v5 8 88 CHLRE_01g009650v5 9 147 CHLRE_13g573300v5 10 516 CHLRE_02g114750v5 11 384 CHLRE_06g260250v5 12 170 CHLRE_06g305050v5 13 100 CHLRE_01g013150v5 14 47 CHLRE_06g283000v5 15 100 CHLRE_10g439650v5 16 128 CHLRE_10g423750v5 17 100 CHLRE_03g154850v5 18 120 CHLRE_12g499950v5 19 278 CHLRE_17g712350v5 20 54 CHLRE_12g558550v5 21 108 CHLRE_10g460650v5 22 186 CHLRE_11g479850v5 23 687 CHLRE_02g079050v5 24 151 CHLRE_12g555950v5 25 160 CHLRE_02g106500v5 26 1000 CHLRE_08g360050v5 27 110 CHLRE_01g048400v5 28 100 CHLRE_06g301600v5 29 48 CHLRE_03g159650v5 30 94 CHLRE_12g524950v5 31 784 CHLRE_13g591250v5 32 150 CHLRE_06g307900v5 33 48 CHLRE_16g690100v5 34 46 CHLRE_16g650450v5 35 141 CHLRE_03g185650v5 36 120 CHLRE_03g201200v5 37 859 CHLRE_08g367550v5 38 48 CHLRE_08g364950v5 39 130 CHLRE_17g723200v5 40 120 CHLRE_06g275950v5 41 98 CHLRE_01g001800v5 42 1000 CHLRE_08g362050v5 43 54 CHLRE_01g039500v5 44 532 CHLRE_17g700750v5 45 120 CHLRE_09g389100v5 46 100 CHLRE_12g495850v5 47 110 CHLRE_03g160000v5 48 373 CHLRE_06g289900v5 49 218 CHLRE_07g329900v5 50 54 CHLRE_02g109550v5 51 556 CHLRE_17g710200v5 52 78 CHLRE_01g046150v5 53 100 CHLRE_17g721250v5 54 132 CHLRE_13g607500v5 55 625 CHLRE_03g191300v5 56 173 CHLRE_06g271800v5 57 100 CHLRE_02g105650v5 58 96 CHLRE_16g688650v5 59 79 CHLRE_06g298300v5 60 120 CHLRE_07g337800v5 61 1000 CHLRE_04g223150v5 62 604 CHLRE_04g224700v5 63 220 CHLRE_07g343433v5 64 100 CHLRE_12g495050v5 65 94 CHLRE_14g625950v5 66 100 CHLRE_04g227900v5 67 240 CHLRE_04g217931v5 68 88 CHLRE_02g095137v5 69 58 CHLRE_06g257800v5 70 160 CHLRE_12g524150v5 71 838 CHLRE_02g118950v5 72 1000 CHLRE_16g676421v5 73 64 CHLRE_16g686800v5 74 134 CHLRE_09g387100v5 75 1000 CHLRE_09g412450v5 76 110 CHLRE_12g527300v5 77 621 CHLRE_02g095900v5 78 154 CHLRE_13g565550v5 79 554 CHLRE_06g275550v5 80 120 CHLRE_02g084800v5 81 120 CHLRE_12g533300v5 82 64 CHLRE_06g267100v5 83 135 CHLRE_08g358350v5 84 137 CHLRE_03g179550v5 85 100 CHLRE_14g630500v5 86 140 CHLRE_12g500450v5 87 128 CHLRE_12g497750v5 88 820 CHLRE_07g345300v5 89 117 CHLRE_02g092500v5 90 530 CHLRE_12g538650v5 91 1000 CHLRE_06g254150v5 92 100 CHLRE_12g541750v5 Oligonucleotide statistics: Total occurrences 23811 Position interval parameters: Position interval 20 Number of windows 50 Total positions 24119 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 6 120 2 -24 [-479,-460] -469.5 6 120 3 -23 [-459,-440] -449.5 6 120 4 -22 [-439,-420] -429.5 7 130 5 -21 [-419,-400] -409.5 9 170 6 -20 [-399,-380] -389.5 10 192 7 -19 [-379,-360] -369.5 11 208 8 -18 [-359,-340] -349.5 12 224 9 -17 [-339,-320] -329.5 12 240 10 -16 [-319,-300] -309.5 15 266 11 -15 [-299,-280] -289.5 15 300 12 -14 [-279,-260] -269.5 19 348 13 -13 [-259,-240] -249.5 20 398 14 -12 [-239,-220] -229.5 20 400 15 -11 [-219,-200] -209.5 20 400 16 -10 [-199,-180] -189.5 22 419 17 -9 [-179,-160] -169.5 22 440 18 -8 [-159,-140] -149.5 22 440 19 -7 [-139,-120] -129.5 23 460 20 -6 [-119,-100] -109.5 26 500 21 -5 [-99,-80] -89.5 30 554 22 -4 [-79,-60] -69.5 46 788 23 -3 [-59,-40] -49.5 78 1335 24 -2 [-39,-20] -29.5 92 1682 25 -1 [-19,0] -9.5 92 1840 26 0 [1,20] 10.5 92 1840 27 1 [21,40] 30.5 92 1668 28 2 [41,60] 50.5 78 1318 29 3 [61,80] 70.5 46 773 30 4 [81,100] 90.5 30 548 31 5 [101,120] 110.5 26 498 32 6 [121,140] 130.5 23 458 33 7 [141,160] 150.5 22 440 34 8 [161,180] 170.5 22 440 35 9 [181,200] 190.5 22 418 36 10 [201,220] 210.5 20 400 37 11 [221,240] 230.5 20 400 38 12 [241,260] 250.5 20 398 39 13 [261,280] 270.5 19 344 40 14 [281,300] 290.5 15 300 41 15 [301,320] 310.5 15 264 42 16 [321,340] 330.5 12 240 43 17 [341,360] 350.5 12 223 44 18 [361,380] 370.5 11 206 45 19 [381,400] 390.5 10 192 46 20 [401,420] 410.5 9 168 47 21 [421,440] 430.5 7 129 48 22 [441,460] 450.5 6 120 49 23 [461,480] 470.5 6 120 50 24 [481,500] 490.5 6 120 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 6943 | 110.0 | 49 | 1.4e-06 | 5.6e-06 | 5.25 | 1 | 27 | 24 | 26 | 24 | 54 | 48 | 59 | 64 | 58 | 79 | 86 | 97 | 110 | 114 | 120 | 146 | 144 | 143 | 169 | 146 | 135 | 220 | 401 | 526 | 525 | 489 | 414 | 299 | 198 | 156 | 165 | 144 | 149 | 144 | 140 | 130 | 113 | 115 | 110 | 73 | 89 | 90 | 70 | 56 | 49 | 45 | 41 | 33 | 42 | 44 |
| t | t | 4902 | 89.9 | 49 | 3.3e-04 | 0.0013 | 2.88 | 2 | 20 | 22 | 24 | 22 | 36 | 28 | 37 | 38 | 45 | 48 | 48 | 55 | 76 | 81 | 94 | 74 | 73 | 86 | 69 | 99 | 126 | 168 | 281 | 342 | 367 | 431 | 366 | 338 | 148 | 104 | 94 | 111 | 99 | 75 | 55 | 76 | 80 | 79 | 76 | 74 | 41 | 48 | 51 | 45 | 40 | 29 | 24 | 17 | 20 | 22 |
| a | a | 5221 | 88.5 | 49 | 4.7e-04 | 0.0019 | 2.73 | 3 | 23 | 23 | 19 | 22 | 21 | 36 | 46 | 35 | 34 | 40 | 72 | 83 | 74 | 68 | 75 | 86 | 96 | 94 | 87 | 105 | 119 | 196 | 348 | 365 | 421 | 380 | 413 | 304 | 176 | 136 | 117 | 92 | 77 | 79 | 80 | 77 | 96 | 101 | 64 | 72 | 46 | 49 | 44 | 45 | 45 | 40 | 31 | 25 | 19 | 25 |
| c | c | 6745 | 61.1 | 49 | 1.1e-01 | 0.46 | 0.34 | 4 | 36 | 31 | 31 | 42 | 39 | 60 | 46 | 67 | 83 | 79 | 74 | 93 | 118 | 123 | 111 | 113 | 127 | 117 | 135 | 150 | 174 | 204 | 305 | 449 | 527 | 540 | 475 | 377 | 251 | 152 | 122 | 111 | 109 | 122 | 129 | 117 | 111 | 103 | 94 | 81 | 88 | 53 | 58 | 60 | 58 | 54 | 33 | 45 | 39 | 29 |
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