/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2.tf
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2.tf
		file1	1	10	32
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m2 fgenesh1_pg.scaffold_194000034/M1570_1.02/CISBP oligos_6-8nt_m2 fgenesh1_pg.scaffold_194000034:M1570_1.02:CISBP 0.823 0.823 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m2 AT1G76580/M1564_1.02/CISBP oligos_6-8nt_m2 AT1G76580:M1564_1.02:CISBP 0.803 0.803 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m2 SPL5/MA1059.1/JASPAR oligos_6-8nt_m2 SPL5:MA1059.1:JASPAR 0.857 0.771 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6-8nt_m2 SPL5/M1565_1.02/CISBP oligos_6-8nt_m2 SPL5:M1565_1.02:CISBP 0.855 0.769 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6-8nt_m2 SPL14/M1561_1.02/CISBP oligos_6-8nt_m2 SPL14:M1561_1.02:CISBP 0.852 0.767 10 9 9 10 0.9000 0.9000 1.0000 D 0
oligos_6-8nt_m2 PK06791.1/M1559_1.02/CISBP oligos_6-8nt_m2 PK06791.1:M1559_1.02:CISBP 0.847 0.763 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6-8nt_m2 fgenesh1_pg.scaffold_252000020/M1571_1.02/CISBP oligos_6-8nt_m2 fgenesh1_pg.scaffold_252000020:M1571_1.02:CISBP 0.836 0.752 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6-8nt_m2 SPL12/MA1057.1/JASPAR oligos_6-8nt_m2 SPL12:MA1057.1:JASPAR 0.867 0.694 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6-8nt_m2 SPL12/M1566_1.02/CISBP oligos_6-8nt_m2 SPL12:M1566_1.02:CISBP 0.866 0.693 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6-8nt_m2 SPL9/MA1322.1/JASPAR oligos_6-8nt_m2 SPL9:MA1322.1:JASPAR 0.757 0.688 10 11 10 11 0.9091 1.0000 0.9091 R -1
oligos_6-8nt_m2 ppa000682m/M1572_1.02/CISBP oligos_6-8nt_m2 ppa000682m:M1572_1.02:CISBP 0.839 0.686 10 10 9 11 0.8182 0.9000 0.9000 D -1
oligos_6-8nt_m2 SPL1.DAP/M0737/AthalianaCistrome oligos_6-8nt_m2 SPL1.DAP:M0737:AthalianaCistrome 0.752 0.684 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_6-8nt_m2 PK22320.1/M1560_1.02/CISBP oligos_6-8nt_m2 PK22320.1:M1560_1.02:CISBP 0.835 0.683 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6-8nt_m2 SPL14/MA0586.2/JASPAR oligos_6-8nt_m2 SPL14:MA0586.2:JASPAR 0.744 0.676 10 11 10 11 0.9091 1.0000 0.9091 R -1
oligos_6-8nt_m2 SPL13/MA1321.1/JASPAR oligos_6-8nt_m2 SPL13:MA1321.1:JASPAR 0.741 0.674 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_6-8nt_m2 SPL10/MA1799.1/JASPAR oligos_6-8nt_m2 SPL10:MA1799.1:JASPAR 0.820 0.671 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6-8nt_m2 SPL9.ampDAP/M0733/AthalianaCistrome oligos_6-8nt_m2 SPL9.ampDAP:M0733:AthalianaCistrome 0.728 0.662 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_6-8nt_m2 SPL1.ampDAP/M0735/AthalianaCistrome oligos_6-8nt_m2 SPL1.ampDAP:M0735:AthalianaCistrome 0.805 0.659 10 10 9 11 0.8182 0.9000 0.9000 R 1
oligos_6-8nt_m2 SPL11/M1562_1.02/CISBP oligos_6-8nt_m2 SPL11:M1562_1.02:CISBP 0.788 0.656 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6-8nt_m2 SPL11/MA1056.1/JASPAR oligos_6-8nt_m2 SPL11:MA1056.1:JASPAR 0.786 0.655 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6-8nt_m2 SPL11/MA1056.2/JASPAR oligos_6-8nt_m2 SPL11:MA1056.2:JASPAR 0.800 0.640 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6-8nt_m2 SPL5.ampDAP/M0731/AthalianaCistrome oligos_6-8nt_m2 SPL5.ampDAP:M0731:AthalianaCistrome 0.782 0.640 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6-8nt_m2 SPL7/MA1060.1/JASPAR oligos_6-8nt_m2 SPL7:MA1060.1:JASPAR 0.800 0.640 10 8 8 10 0.8000 0.8000 1.0000 R 0
oligos_6-8nt_m2 SPL7/SPL7/ArabidopsisPBM oligos_6-8nt_m2 SPL7:SPL7:ArabidopsisPBM 0.782 0.639 10 10 9 11 0.8182 0.9000 0.9000 R -1
oligos_6-8nt_m2 SPL4/M1563_1.02/CISBP oligos_6-8nt_m2 SPL4:M1563_1.02:CISBP 0.861 0.626 10 9 8 11 0.7273 0.8000 0.8889 D 2
oligos_6-8nt_m2 SPL4/MA1058.1/JASPAR oligos_6-8nt_m2 SPL4:MA1058.1:JASPAR 0.860 0.625 10 9 8 11 0.7273 0.8000 0.8889 D 2
oligos_6-8nt_m2 SPL7/M1567_1.02/CISBP oligos_6-8nt_m2 SPL7:M1567_1.02:CISBP 0.846 0.615 10 9 8 11 0.7273 0.8000 0.8889 D 2
oligos_6-8nt_m2 SPL3/MA1319.1/JASPAR oligos_6-8nt_m2 SPL3:MA1319.1:JASPAR 0.766 0.613 10 8 8 10 0.8000 0.8000 1.0000 R 2
oligos_6-8nt_m2 SPL9/MA1322.3/JASPAR oligos_6-8nt_m2 SPL9:MA1322.3:JASPAR 0.871 0.610 10 7 7 10 0.7000 0.7000 1.0000 R 3
oligos_6-8nt_m2 SPL13A/MA1321.2/JASPAR oligos_6-8nt_m2 SPL13A:MA1321.2:JASPAR 0.762 0.609 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6-8nt_m2 SPL14/MA0586.3/JASPAR oligos_6-8nt_m2 SPL14:MA0586.3:JASPAR 0.869 0.608 10 7 7 10 0.7000 0.7000 1.0000 R 3
oligos_6-8nt_m2 bHLH28.DAP/M0159/AthalianaCistrome oligos_6-8nt_m2 bHLH28.DAP:M0159:AthalianaCistrome 0.722 0.602 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6-8nt_m2 SPL9/MA1322.2/JASPAR oligos_6-8nt_m2 SPL9:MA1322.2:JASPAR 0.791 0.594 10 11 9 12 0.7500 0.9000 0.8182 R 1
oligos_6-8nt_m2 SPL1/MA1055.3/JASPAR oligos_6-8nt_m2 SPL1:MA1055.3:JASPAR 0.742 0.593 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6-8nt_m2 SPL3/MA0577.4/JASPAR oligos_6-8nt_m2 SPL3:MA0577.4:JASPAR 0.740 0.592 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6-8nt_m2 BHLH28/UN0359.2/JASPAR oligos_6-8nt_m2 BHLH28:UN0359.2:JASPAR 0.738 0.590 10 8 8 10 0.8000 0.8000 1.0000 R 2
oligos_6-8nt_m2 SBP8/MA2421.1/JASPAR oligos_6-8nt_m2 SBP8:MA2421.1:JASPAR 0.721 0.576 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6-8nt_m2 B9GPL8_POPTR/M1568_1.02/CISBP oligos_6-8nt_m2 B9GPL8_POPTR:M1568_1.02:CISBP 0.821 0.574 10 7 7 10 0.7000 0.7000 1.0000 D 2
oligos_6-8nt_m2 POPTR/MA0955.1/JASPAR oligos_6-8nt_m2 POPTR:MA0955.1:JASPAR 0.819 0.573 10 7 7 10 0.7000 0.7000 1.0000 D 2
oligos_6-8nt_m2 SPL12/MA1057.2/JASPAR oligos_6-8nt_m2 SPL12:MA1057.2:JASPAR 0.954 0.573 10 6 6 10 0.6000 0.6000 1.0000 D 3
oligos_6-8nt_m2 RGL2/M0821_1.02/CISBP oligos_6-8nt_m2 RGL2:M0821_1.02:CISBP 0.786 0.572 10 9 8 11 0.7273 0.8000 0.8889 D 2
oligos_6-8nt_m2 Zm00001d018571/MA1822.1/JASPAR oligos_6-8nt_m2 Zm00001d018571:MA1822.1:JASPAR 0.740 0.570 10 13 10 13 0.7692 1.0000 0.7692 D 0
oligos_6-8nt_m2 TFLG2-Zm00001d042777/MA1835.1/JASPAR oligos_6-8nt_m2 TFLG2-Zm00001d042777:MA1835.1:JASPAR 0.740 0.570 10 13 10 13 0.7692 1.0000 0.7692 D 0
oligos_6-8nt_m2 SPL11.DAP/M0741/AthalianaCistrome oligos_6-8nt_m2 SPL11.DAP:M0741:AthalianaCistrome 0.758 0.568 10 11 9 12 0.7500 0.9000 0.8182 D -2
oligos_6-8nt_m2 SPL10/MA1799.2/JASPAR oligos_6-8nt_m2 SPL10:MA1799.2:JASPAR 0.936 0.562 10 6 6 10 0.6000 0.6000 1.0000 D 3
oligos_6-8nt_m2 SPL1/MA1055.2/JASPAR oligos_6-8nt_m2 SPL1:MA1055.2:JASPAR 0.725 0.557 10 13 10 13 0.7692 1.0000 0.7692 D 0
oligos_6-8nt_m2 SPL3/MA0577.3/JASPAR oligos_6-8nt_m2 SPL3:MA0577.3:JASPAR 0.738 0.553 10 11 9 12 0.7500 0.9000 0.8182 D 1
oligos_6-8nt_m2 TFLG2-Zm00001d042777/MA1835.2/JASPAR oligos_6-8nt_m2 TFLG2-Zm00001d042777:MA1835.2:JASPAR 0.858 0.546 10 8 7 11 0.6364 0.7000 0.8750 D 3
oligos_6-8nt_m2 AtSPL3/AtSPL3/Athamap oligos_6-8nt_m2 AtSPL3:AtSPL3:Athamap 0.869 0.543 10 16 10 16 0.6250 1.0000 0.6250 R -3
oligos_6-8nt_m2 Zm00001d018571/MA1822.2/JASPAR oligos_6-8nt_m2 Zm00001d018571:MA1822.2:JASPAR 0.852 0.542 10 8 7 11 0.6364 0.7000 0.8750 D 3
oligos_6-8nt_m2 SPL3.ampDAP/M0740/AthalianaCistrome oligos_6-8nt_m2 SPL3.ampDAP:M0740:AthalianaCistrome 0.701 0.539 10 13 10 13 0.7692 1.0000 0.7692 D -1
oligos_6-8nt_m2 At3g54990/MA0553.1/JASPAR oligos_6-8nt_m2 At3g54990:MA0553.1:JASPAR 0.834 0.531 10 8 7 11 0.6364 0.7000 0.8750 R 3
oligos_6-8nt_m2 TOE2/TOE2/ArabidopsisPBM oligos_6-8nt_m2 TOE2:TOE2:ArabidopsisPBM 0.780 0.520 10 10 8 12 0.6667 0.8000 0.8000 R 2
oligos_6-8nt_m2 SPL5/MA1059.3/JASPAR oligos_6-8nt_m2 SPL5:MA1059.3:JASPAR 0.702 0.510 10 9 8 11 0.7273 0.8000 0.8889 D 2
oligos_6-8nt_m2 bZIP65/EEAD0071/EEADannot oligos_6-8nt_m2 bZIP65:EEAD0071:EEADannot 0.838 0.503 10 6 6 10 0.6000 0.6000 1.0000 D 4
oligos_6-8nt_m2 TOE1/TOE1/ArabidopsisPBM oligos_6-8nt_m2 TOE1:TOE1:ArabidopsisPBM 0.751 0.501 10 10 8 12 0.6667 0.8000 0.8000 R 2
oligos_6-8nt_m2 AtSPL8/AtSPL8/Athamap oligos_6-8nt_m2 AtSPL8:AtSPL8:Athamap 0.794 0.496 10 16 10 16 0.6250 1.0000 0.6250 R -3
oligos_6-8nt_m2 SPL7/MA1060.2/JASPAR oligos_6-8nt_m2 SPL7:MA1060.2:JASPAR 0.815 0.489 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6-8nt_m2 SPL4/MA1058.2/JASPAR oligos_6-8nt_m2 SPL4:MA1058.2:JASPAR 0.974 0.487 10 5 5 10 0.5000 0.5000 1.0000 D 3
oligos_6-8nt_m2 BHLH28/UN0359.1/JASPAR oligos_6-8nt_m2 BHLH28:UN0359.1:JASPAR 0.722 0.481 10 15 10 15 0.6667 1.0000 0.6667 R 0
oligos_6-8nt_m2 At3g60580.DAP/M0307/AthalianaCistrome oligos_6-8nt_m2 At3g60580.DAP:M0307:AthalianaCistrome 0.745 0.474 10 8 7 11 0.6364 0.7000 0.8750 D -1
oligos_6-8nt_m2 ZAT9/UN0417.1/JASPAR oligos_6-8nt_m2 ZAT9:UN0417.1:JASPAR 0.745 0.474 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6-8nt_m2 GTAC/EEAD0169/EEADannot oligos_6-8nt_m2 GTAC:EEAD0169:EEADannot 0.926 0.463 10 5 5 10 0.5000 0.5000 1.0000 D 3
oligos_6-8nt_m2 BZIP17/UN0854.1/JASPAR oligos_6-8nt_m2 BZIP17:UN0854.1:JASPAR 0.919 0.460 10 5 5 10 0.5000 0.5000 1.0000 D 5
oligos_6-8nt_m2 NAC043/MA1045.2/JASPAR oligos_6-8nt_m2 NAC043:MA1045.2:JASPAR 0.716 0.455 10 8 7 11 0.6364 0.7000 0.8750 R 3
oligos_6-8nt_m2 ZAT9/UN0417.2/JASPAR oligos_6-8nt_m2 ZAT9:UN0417.2:JASPAR 0.748 0.449 10 6 6 10 0.6000 0.6000 1.0000 R 1
oligos_6-8nt_m2 NAC083/MA1043.2/JASPAR oligos_6-8nt_m2 NAC083:MA1043.2:JASPAR 0.807 0.440 10 7 6 11 0.5455 0.6000 0.8571 D 4
oligos_6-8nt_m2 ACGT/EEAD0085/EEADannot oligos_6-8nt_m2 ACGT:EEAD0085:EEADannot 0.730 0.438 10 6 6 10 0.6000 0.6000 1.0000 R 4
oligos_6-8nt_m2 NAC019/MA1786.2/JASPAR oligos_6-8nt_m2 NAC019:MA1786.2:JASPAR 0.795 0.433 10 7 6 11 0.5455 0.6000 0.8571 D 4
oligos_6-8nt_m2 anac025/M1400_1.02/CISBP oligos_6-8nt_m2 anac025:M1400_1.02:CISBP 0.829 0.414 10 8 6 12 0.5000 0.6000 0.7500 D 4
oligos_6-8nt_m2 NAC025/MA0935.1/JASPAR oligos_6-8nt_m2 NAC025:MA0935.1:JASPAR 0.829 0.414 10 8 6 12 0.5000 0.6000 0.7500 D 4 
 Host name	rsat
 Job started	2025-06-19.093513
 Job done	2025-06-19.093515
 Seconds	1.33
	user	1.33
	system	0.05
	cuser	0.23
;	csystem	0.04