RSAT - compare-matrices result

Analysis: result (19/06/2025 09:35)

Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093456_2025-06-19.093456_nFlB6k/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants

Input files

TypeFile
file1peak-motifs_oligos_6-8nt_m4.tf
file2../../../../../../../../../motif_databases/footprintDB/footprintDB.plants.motif.tf

Output files

TypeFile
match_table_txtpeak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants.tab
match_table_htmlpeak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants.html
alignments_1tonpeak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants_alignments_1ton.tab
alignments_1ton_htmlpeak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants_alignments_1ton.html

Directories

TypeDirectory
output.
aligned_logospeak-motifs_oligos_6-8nt_m4_vs_db_footprintDB-plants_aligned_logos