position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title m11 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 86 Sum of sequence lengths 23250 Min sequence length 0 Max sequence length 1000 Average sequence length 270 Possible positions 23250 Sequences: # length ID 1 182 CHLRE_16g683450v5 2 1000 CHLRE_02g091050v5 3 134 CHLRE_09g414250v5 4 98 CHLRE_01g045700v5 5 1000 CHLRE_07g341550v5 6 100 CHLRE_03g163300v5 7 46 CHLRE_01g022600v5 8 1000 CHLRE_16g661150v5 9 108 CHLRE_10g445100v5 10 578 CHLRE_14g629000v5 11 170 CHLRE_01g001550v5 12 127 CHLRE_10g417550v5 13 474 CHLRE_04g228450v5 14 48 CHLRE_16g650400v5 15 135 CHLRE_02g141100v5 16 124 CHLRE_10g446500v5 17 124 CHLRE_02g092600v5 18 48 CHLRE_10g453807v5 19 100 CHLRE_04g221550v5 20 1000 CHLRE_09g414416v5 21 54 CHLRE_01g007950v5 22 543 CHLRE_01g045903v5 23 110 CHLRE_10g418700v5 24 112 CHLRE_05g240000v5 25 54 CHLRE_01g025450v5 26 132 CHLRE_12g509250v5 27 480 CHLRE_05g245701v5 28 100 CHLRE_10g441900v5 29 126 CHLRE_12g485000v5 30 49 CHLRE_10g458600v5 31 387 CHLRE_03g178350v5 32 110 CHLRE_01g029350v5 33 48 CHLRE_13g563700v5 34 112 CHLRE_11g468900v5 35 1000 CHLRE_08g364000v5 36 1000 CHLRE_07g330700v5 37 110 CHLRE_08g359850v5 38 164 CHLRE_07g315700v5 39 48 CHLRE_03g180600v5 40 157 CHLRE_13g561850v5 41 58 CHLRE_11g469500v5 42 92 CHLRE_14g616600v5 43 140 CHLRE_01g019150v5 44 130 CHLRE_03g171300v5 45 117 CHLRE_14g628350v5 46 100 CHLRE_12g535700v5 47 100 CHLRE_12g524350v5 48 55 CHLRE_17g713700v5 49 87 CHLRE_17g735200v5 50 198 CHLRE_10g423800v5 51 74 CHLRE_17g714150v5 52 158 CHLRE_12g514000v5 53 120 CHLRE_03g164101v5 54 48 CHLRE_16g674000v5 55 100 CHLRE_09g398215v5 56 500 CHLRE_06g278850v5 57 120 CHLRE_17g740600v5 58 126 CHLRE_03g164650v5 59 100 CHLRE_09g388282v5 60 156 CHLRE_01g032800v5 61 684 CHLRE_15g640450v5 62 1000 CHLRE_12g556228v5 63 1000 CHLRE_02g141200v5 64 100 CHLRE_06g267200v5 65 1000 CHLRE_16g685217v5 66 131 CHLRE_12g487500v5 67 148 CHLRE_03g183750v5 68 120 CHLRE_02g104350v5 69 496 CHLRE_10g443050v5 70 180 CHLRE_03g192201v5 71 120 CHLRE_07g320650v5 72 1000 CHLRE_02g144650v5 73 390 CHLRE_08g366400v5 74 297 CHLRE_02g101350v5 75 966 CHLRE_07g347050v5 76 100 CHLRE_03g184600v5 77 120 CHLRE_03g158250v5 78 97 CHLRE_13g570250v5 79 100 CHLRE_17g717350v5 80 117 CHLRE_04g212550v5 81 139 CHLRE_07g335800v5 82 55 CHLRE_03g180100v5 83 479 CHLRE_09g388060v5 84 100 CHLRE_06g279900v5 85 110 CHLRE_12g547450v5 86 130 CHLRE_17g716800v5 Oligonucleotide statistics: Total occurrences 22585 Position interval parameters: Position interval 20 Number of windows 50 Total positions 23250 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 11 204 2 -24 [-479,-460] -469.5 11 220 3 -23 [-459,-440] -449.5 11 220 4 -22 [-439,-420] -429.5 11 220 5 -21 [-419,-400] -409.5 11 220 6 -20 [-399,-380] -389.5 11 220 7 -19 [-379,-360] -369.5 11 220 8 -18 [-359,-340] -349.5 12 222 9 -17 [-339,-320] -329.5 12 240 10 -16 [-319,-300] -309.5 12 240 11 -15 [-299,-280] -289.5 13 250 12 -14 [-279,-260] -269.5 14 272 13 -13 [-259,-240] -249.5 16 298 14 -12 [-239,-220] -229.5 19 378 15 -11 [-219,-200] -209.5 19 380 16 -10 [-199,-180] -189.5 21 410 17 -9 [-179,-160] -169.5 21 420 18 -8 [-159,-140] -149.5 22 429 19 -7 [-139,-120] -129.5 22 440 20 -6 [-119,-100] -109.5 22 440 21 -5 [-99,-80] -89.5 27 490 22 -4 [-79,-60] -69.5 44 687 23 -3 [-59,-40] -49.5 73 1267 24 -2 [-39,-20] -29.5 86 1549 25 -1 [-19,0] -9.5 86 1720 26 0 [1,20] 10.5 86 1720 27 1 [21,40] 30.5 86 1536 28 2 [41,60] 50.5 73 1253 29 3 [61,80] 70.5 44 670 30 4 [81,100] 90.5 27 484 31 5 [101,120] 110.5 22 440 32 6 [121,140] 130.5 22 440 33 7 [141,160] 150.5 22 428 34 8 [161,180] 170.5 21 420 35 9 [181,200] 190.5 21 407 36 10 [201,220] 210.5 19 380 37 11 [221,240] 230.5 19 375 38 12 [241,260] 250.5 16 298 39 13 [261,280] 270.5 14 271 40 14 [281,300] 290.5 13 248 41 15 [301,320] 310.5 12 240 42 16 [321,340] 330.5 12 240 43 17 [341,360] 350.5 12 222 44 18 [361,380] 370.5 11 220 45 19 [381,400] 390.5 11 220 46 20 [401,420] 410.5 11 220 47 21 [421,440] 430.5 11 220 48 22 [441,460] 450.5 11 220 49 23 [461,480] 470.5 11 220 50 24 [481,500] 490.5 11 202 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 4902 | 96.0 | 49 | 6.9e-05 | 0.00028 | 3.56 | 1 | 35 | 32 | 45 | 51 | 45 | 44 | 41 | 52 | 53 | 48 | 61 | 67 | 58 | 75 | 67 | 54 | 79 | 73 | 84 | 74 | 103 | 156 | 293 | 371 | 374 | 369 | 355 | 317 | 179 | 92 | 111 | 89 | 96 | 77 | 78 | 80 | 77 | 58 | 54 | 39 | 38 | 53 | 44 | 41 | 34 | 39 | 37 | 36 | 34 | 40 |
| t | t | 4842 | 86.0 | 49 | 8.6e-04 | 0.0034 | 2.47 | 2 | 46 | 37 | 37 | 42 | 42 | 51 | 44 | 36 | 41 | 47 | 51 | 45 | 60 | 71 | 69 | 91 | 87 | 84 | 81 | 106 | 108 | 162 | 305 | 299 | 372 | 397 | 334 | 322 | 160 | 113 | 91 | 95 | 70 | 78 | 78 | 64 | 69 | 64 | 50 | 42 | 47 | 40 | 30 | 41 | 51 | 38 | 34 | 31 | 54 | 35 |
| g | g | 6610 | 69.1 | 49 | 3.1e-02 | 0.12 | 0.91 | 3 | 36 | 62 | 67 | 62 | 73 | 60 | 68 | 70 | 88 | 73 | 68 | 76 | 89 | 93 | 99 | 110 | 122 | 152 | 131 | 121 | 144 | 208 | 369 | 465 | 499 | 489 | 421 | 285 | 160 | 127 | 120 | 123 | 138 | 138 | 122 | 98 | 95 | 77 | 73 | 83 | 79 | 68 | 69 | 71 | 60 | 68 | 70 | 61 | 58 | 52 |
| c | c | 6231 | 52.2 | 49 | 3.5e-01 | 1.4 | -0.15 | 4 | 47 | 49 | 68 | 65 | 60 | 65 | 67 | 64 | 58 | 72 | 70 | 84 | 85 | 115 | 105 | 116 | 112 | 100 | 135 | 139 | 135 | 161 | 287 | 394 | 468 | 465 | 426 | 329 | 171 | 152 | 114 | 113 | 104 | 107 | 109 | 118 | 114 | 79 | 74 | 64 | 56 | 59 | 59 | 47 | 55 | 55 | 59 | 72 | 54 | 55 |
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