/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title m11 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	86
	Sum of sequence lengths      	23250
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	270
	Possible positions           	23164
 Sequences:
	#	length	ID
	1	182	CHLRE_16g683450v5
	2	1000	CHLRE_02g091050v5
	3	134	CHLRE_09g414250v5
	4	98	CHLRE_01g045700v5
	5	1000	CHLRE_07g341550v5
	6	100	CHLRE_03g163300v5
	7	46	CHLRE_01g022600v5
	8	1000	CHLRE_16g661150v5
	9	108	CHLRE_10g445100v5
	10	578	CHLRE_14g629000v5
	11	170	CHLRE_01g001550v5
	12	127	CHLRE_10g417550v5
	13	474	CHLRE_04g228450v5
	14	48	CHLRE_16g650400v5
	15	135	CHLRE_02g141100v5
	16	124	CHLRE_10g446500v5
	17	124	CHLRE_02g092600v5
	18	48	CHLRE_10g453807v5
	19	100	CHLRE_04g221550v5
	20	1000	CHLRE_09g414416v5
	21	54	CHLRE_01g007950v5
	22	543	CHLRE_01g045903v5
	23	110	CHLRE_10g418700v5
	24	112	CHLRE_05g240000v5
	25	54	CHLRE_01g025450v5
	26	132	CHLRE_12g509250v5
	27	480	CHLRE_05g245701v5
	28	100	CHLRE_10g441900v5
	29	126	CHLRE_12g485000v5
	30	49	CHLRE_10g458600v5
	31	387	CHLRE_03g178350v5
	32	110	CHLRE_01g029350v5
	33	48	CHLRE_13g563700v5
	34	112	CHLRE_11g468900v5
	35	1000	CHLRE_08g364000v5
	36	1000	CHLRE_07g330700v5
	37	110	CHLRE_08g359850v5
	38	164	CHLRE_07g315700v5
	39	48	CHLRE_03g180600v5
	40	157	CHLRE_13g561850v5
	41	58	CHLRE_11g469500v5
	42	92	CHLRE_14g616600v5
	43	140	CHLRE_01g019150v5
	44	130	CHLRE_03g171300v5
	45	117	CHLRE_14g628350v5
	46	100	CHLRE_12g535700v5
	47	100	CHLRE_12g524350v5
	48	55	CHLRE_17g713700v5
	49	87	CHLRE_17g735200v5
	50	198	CHLRE_10g423800v5
	51	74	CHLRE_17g714150v5
	52	158	CHLRE_12g514000v5
	53	120	CHLRE_03g164101v5
	54	48	CHLRE_16g674000v5
	55	100	CHLRE_09g398215v5
	56	500	CHLRE_06g278850v5
	57	120	CHLRE_17g740600v5
	58	126	CHLRE_03g164650v5
	59	100	CHLRE_09g388282v5
	60	156	CHLRE_01g032800v5
	61	684	CHLRE_15g640450v5
	62	1000	CHLRE_12g556228v5
	63	1000	CHLRE_02g141200v5
	64	100	CHLRE_06g267200v5
	65	1000	CHLRE_16g685217v5
	66	131	CHLRE_12g487500v5
	67	148	CHLRE_03g183750v5
	68	120	CHLRE_02g104350v5
	69	496	CHLRE_10g443050v5
	70	180	CHLRE_03g192201v5
	71	120	CHLRE_07g320650v5
	72	1000	CHLRE_02g144650v5
	73	390	CHLRE_08g366400v5
	74	297	CHLRE_02g101350v5
	75	966	CHLRE_07g347050v5
	76	100	CHLRE_03g184600v5
	77	120	CHLRE_03g158250v5
	78	97	CHLRE_13g570250v5
	79	100	CHLRE_17g717350v5
	80	117	CHLRE_04g212550v5
	81	139	CHLRE_07g335800v5
	82	55	CHLRE_03g180100v5
	83	479	CHLRE_09g388060v5
	84	100	CHLRE_06g279900v5
	85	110	CHLRE_12g547450v5
	86	130	CHLRE_17g716800v5
 Oligonucleotide statistics:
	Total occurrences    	22496
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	23164
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	11	204
	2	-24	[-479,-460]	-469.5	11	220
	3	-23	[-459,-440]	-449.5	11	220
	4	-22	[-439,-420]	-429.5	11	220
	5	-21	[-419,-400]	-409.5	11	220
	6	-20	[-399,-380]	-389.5	11	220
	7	-19	[-379,-360]	-369.5	11	220
	8	-18	[-359,-340]	-349.5	12	222
	9	-17	[-339,-320]	-329.5	12	240
	10	-16	[-319,-300]	-309.5	12	240
	11	-15	[-299,-280]	-289.5	13	250
	12	-14	[-279,-260]	-269.5	14	272
	13	-13	[-259,-240]	-249.5	16	298
	14	-12	[-239,-220]	-229.5	19	378
	15	-11	[-219,-200]	-209.5	19	380
	16	-10	[-199,-180]	-189.5	21	410
	17	-9	[-179,-160]	-169.5	21	420
	18	-8	[-159,-140]	-149.5	22	429
	19	-7	[-139,-120]	-129.5	22	440
	20	-6	[-119,-100]	-109.5	22	440
	21	-5	[-99,-80]	-89.5	27	490
	22	-4	[-79,-60]	-69.5	44	687
	23	-3	[-59,-40]	-49.5	73	1267
	24	-2	[-39,-20]	-29.5	86	1549
	25	-1	[-19,0]	-9.5	86	1720
	26	0	[1,20]	10.5	86	1720
	27	1	[21,40]	30.5	86	1523
	28	2	[41,60]	50.5	73	1224
	29	3	[61,80]	70.5	44	653
	30	4	[81,100]	90.5	27	479
	31	5	[101,120]	110.5	22	440
	32	6	[121,140]	130.5	22	440
	33	7	[141,160]	150.5	22	427
	34	8	[161,180]	170.5	21	420
	35	9	[181,200]	190.5	21	405
	36	10	[201,220]	210.5	19	380
	37	11	[221,240]	230.5	19	372
	38	12	[241,260]	250.5	16	296
	39	13	[261,280]	270.5	14	270
	40	14	[281,300]	290.5	13	247
	41	15	[301,320]	310.5	12	240
	42	16	[321,340]	330.5	12	240
	43	17	[341,360]	350.5	12	221
	44	18	[361,380]	370.5	11	220
	45	19	[381,400]	390.5	11	220
	46	20	[401,420]	410.5	11	220
	47	21	[421,440]	430.5	11	220
	48	22	[441,460]	450.5	11	220
	49	23	[461,480]	470.5	11	220
	50	24	[481,500]	490.5	11	191

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
gg gg 1911 141.1 49 7.4e-11 1.2e-09 8.93 1 9 17 16 19 27 18 22 18 34 16 18 21 33 26 26 39 33 61 40 34 43 51 97 130 133 131 106 50 41 37 34 35 58 55 33 29 23 16 23 30 26 24 26 29 17 25 31 20 17 14
aa aa 1158 128.8 49 4.3e-09 6.9e-08 7.16 2 5 9 10 15 7 14 9 11 12 13 10 17 16 15 13 9 22 13 18 12 24 27 82 125 81 91 97 78 48 15 31 19 32 12 16 18 10 7 8 10 7 11 14 11 5 5 6 4 5 9
tt tt 1157 110.2 49 1.3e-06 2.1e-05 4.68 3 14 6 7 10 12 13 5 4 8 6 10 6 17 16 9 28 19 17 23 29 25 27 83 67 105 115 95 92 35 25 19 21 11 17 10 16 12 19 14 10 8 10 3 7 9 9 11 7 13 3
cc cc 1640 87.7 49 5.8e-04 0.0092 2.04 4 14 18 19 20 14 23 22 13 21 20 17 23 25 42 32 37 26 23 33 43 36 35 65 96 114 98 107 67 39 40 30 23 32 33 30 35 35 26 17 26 11 17 16 16 16 18 19 31 13 14
ta ta 797 86.3 49 8.0e-04 0.013 1.89 5 11 3 4 8 10 9 8 5 8 7 13 6 7 15 8 9 13 12 13 13 22 37 50 46 41 47 50 64 39 13 17 18 14 13 14 12 20 11 10 4 7 4 6 7 12 8 3 5 15 6
ca ca 1731 75.1 49 9.7e-03 0.15 0.81 6 8 7 20 14 18 12 21 22 14 15 26 29 30 29 28 24 26 32 38 25 36 55 81 94 157 140 122 113 59 36 37 30 26 28 23 35 30 21 22 11 15 21 14 17 9 11 16 16 5 13
ac ac 1238 63.9 49 7.5e-02 1.2 -0.08 7 11 4 15 14 12 15 9 11 8 11 22 23 16 25 17 15 22 19 26 27 30 36 49 77 86 91 87 87 43 33 21 24 22 18 17 22 29 18 18 7 9 16 6 5 10 12 12 11 10 10
ga ga 1190 59.2 49 1.5e-01 2.4 -0.38 8 7 14 15 10 9 10 5 10 19 15 11 15 7 13 16 11 18 17 16 23 20 38 80 105 99 87 89 56 29 21 26 20 24 25 25 14 19 20 11 13 9 16 11 8 7 15 13 11 7 11
at at 1095 58.1 49 1.7e-01 2.8 -0.45 9 11 6 6 8 8 8 8 13 9 7 15 10 11 14 13 12 14 17 13 18 21 40 70 69 105 88 76 74 40 25 31 19 18 24 19 15 23 14 13 7 7 11 8 9 7 10 6 8 7 10
gt gt 1291 55.7 49 2.4e-01 3.8 -0.58 10 9 14 12 7 13 16 15 11 11 17 18 16 14 26 24 22 25 35 20 18 30 57 73 80 84 95 81 74 32 27 20 25 22 19 29 11 17 16 13 16 19 11 8 18 18 10 8 9 18 8
ct ct 1272 50.6 49 4.1e-01 6.5 -0.82 11 15 7 13 16 11 14 13 12 11 17 9 12 18 17 21 30 28 14 31 36 29 39 72 83 78 99 87 72 43 38 21 28 20 17 21 21 17 13 12 9 11 9 10 9 17 8 8 10 15 11
cg cg 1574 47.6 49 5.3e-01 8.5 -0.93 12 10 17 16 15 17 16 11 17 12 20 18 20 12 27 24 25 32 31 33 35 34 32 69 121 119 128 108 73 29 37 26 32 26 29 35 27 31 19 22 18 19 12 19 5 13 18 16 15 21 13
tg tg 1725 42.3 49 7.4e-01 12 -1.07 13 10 15 18 17 11 19 19 19 18 18 18 20 26 19 31 29 35 35 27 38 43 68 114 117 138 131 102 89 54 37 29 32 30 25 32 19 25 23 15 18 22 15 11 16 19 13 12 9 11 14
tc tc 1136 41.1 49 7.8e-01 13 -1.10 14 11 13 8 7 9 10 12 8 7 16 10 13 10 20 21 25 20 20 18 26 18 30 58 69 88 104 84 66 24 36 25 24 15 23 22 17 12 11 11 10 10 11 10 11 11 8 8 10 15 11
ag ag 1375 41.0 49 7.8e-01 13 -1.10 15 8 13 14 14 18 7 15 17 24 17 14 17 15 21 24 18 21 24 27 17 28 53 91 100 102 99 88 69 41 17 28 27 23 23 24 25 14 17 15 15 15 15 16 16 12 12 13 13 12 7
gc gc 2206 38.9 49 8.5e-01 14 -1.13 16 11 17 24 26 24 16 26 31 24 25 21 24 34 28 33 38 46 39 55 46 51 62 119 150 183 176 144 100 57 42 40 43 34 39 35 44 35 25 26 23 25 17 23 16 18 18 18 21 16 18 
 Host name	rsat
 Job started	2025-06-19.093644
 Job done	2025-06-19.093644
 Seconds	0.25
	user	0.25
	system	0.01
	cuser	0
;	csystem	0