/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1_vs_db_footprintDB-plants.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m1/peak-motifs_oligos_6-8nt_m1.tf
		file1	1	12	50
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m1 FHY3/MA0557.1/JASPAR oligos_6-8nt_m1 FHY3:MA0557.1:JASPAR 0.711 0.711 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m1 fgenesh1_pg.C_Chr_14.0001000151/M0253_1.02/CISBP oligos_6-8nt_m1 fgenesh1_pg.C_Chr_14.0001000151:M0253_1.02:CISBP 0.800 0.667 12 10 10 12 0.8333 0.8333 1.0000 R 0
oligos_6-8nt_m1 bHLH172/UN0431.1/JASPAR oligos_6-8nt_m1 bHLH172:UN0431.1:JASPAR 0.755 0.629 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6-8nt_m1 NTL6/UP00576A_1/UniPROBE oligos_6-8nt_m1 NTL6:UP00576A_1:UniPROBE 0.705 0.597 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_6-8nt_m1 NAC2/M1404_1.02/CISBP oligos_6-8nt_m1 NAC2:M1404_1.02:CISBP 0.701 0.593 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_6-8nt_m1 FAR1/MA1382.1/JASPAR oligos_6-8nt_m1 FAR1:MA1382.1:JASPAR 0.741 0.593 12 15 12 15 0.8000 1.0000 0.8000 D -2
oligos_6-8nt_m1 ANAC58/ANAC58/ArabidopsisPBM oligos_6-8nt_m1 ANAC58:ANAC58:ArabidopsisPBM 0.705 0.587 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_6-8nt_m1 FAR1/MA1382.2/JASPAR oligos_6-8nt_m1 FAR1:MA1382.2:JASPAR 0.775 0.581 12 9 9 12 0.7500 0.7500 1.0000 D 1
oligos_6-8nt_m1 ANAC092/UP00572A_1/UniPROBE oligos_6-8nt_m1 ANAC092:UP00572A_1:UniPROBE 0.714 0.561 12 13 11 14 0.7857 0.9167 0.8462 D 1
oligos_6-8nt_m1 T11I18.17/MA0936.1/JASPAR oligos_6-8nt_m1 T11I18.17:MA0936.1:JASPAR 0.808 0.539 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_6-8nt_m1 ATNAC6/M1407_1.02/CISBP oligos_6-8nt_m1 ATNAC6:M1407_1.02:CISBP 0.702 0.527 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_6-8nt_m1 FHY3/MA0557.2/JASPAR oligos_6-8nt_m1 FHY3:MA0557.2:JASPAR 0.761 0.507 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_6-8nt_m1 NAC058/MA0938.1/JASPAR oligos_6-8nt_m1 NAC058:MA0938.1:JASPAR 0.760 0.506 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_6-8nt_m1 NAC92/MA1044.2/JASPAR oligos_6-8nt_m1 NAC92:MA1044.2:JASPAR 0.752 0.501 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_6-8nt_m1 ANAC079/M1405_1.02/CISBP oligos_6-8nt_m1 ANAC079:M1405_1.02:CISBP 0.748 0.499 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_6-8nt_m1 NAC080/MA0939.1/JASPAR oligos_6-8nt_m1 NAC080:MA0939.1:JASPAR 0.746 0.498 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_6-8nt_m1 XM_002866389.1/M1410_1.02/CISBP oligos_6-8nt_m1 XM_002866389.1:M1410_1.02:CISBP 0.715 0.495 12 10 9 13 0.6923 0.7500 0.9000 D 3
oligos_6-8nt_m1 e_gw1.159.34.1/M1412_1.02/CISBP oligos_6-8nt_m1 e_gw1.159.34.1:M1412_1.02:CISBP 0.704 0.488 12 10 9 13 0.6923 0.7500 0.9000 D 3
oligos_6-8nt_m1 ANAC079.ampDAP/M0703/AthalianaCistrome oligos_6-8nt_m1 ANAC079.ampDAP:M0703:AthalianaCistrome 0.713 0.461 12 16 11 17 0.6471 0.9167 0.6875 D -5
oligos_6-8nt_m1 CAMTA1/MA1197.2/JASPAR oligos_6-8nt_m1 CAMTA1:MA1197.2:JASPAR 0.724 0.446 12 9 8 13 0.6154 0.6667 0.8889 R 4
oligos_6-8nt_m1 Zm00001d034298/MA1834.2/JASPAR oligos_6-8nt_m1 Zm00001d034298:MA1834.2:JASPAR 0.723 0.422 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_6-8nt_m1 NAC019/MA1786.2/JASPAR oligos_6-8nt_m1 NAC019:MA1786.2:JASPAR 0.719 0.420 12 7 7 12 0.5833 0.5833 1.0000 D 4
oligos_6-8nt_m1 SND3.DAP/M0629/AthalianaCistrome oligos_6-8nt_m1 SND3.DAP:M0629:AthalianaCistrome 0.707 0.416 12 15 10 17 0.5882 0.8333 0.6667 R -5
oligos_6-8nt_m1 bHLH172/UN0431.2/JASPAR oligos_6-8nt_m1 bHLH172:UN0431.2:JASPAR 0.810 0.405 12 6 6 12 0.5000 0.5000 1.0000 D 3
oligos_6-8nt_m1 Transcription/5gnj_I/3D-footprint oligos_6-8nt_m1 Transcription:5gnj_I:3D-footprint 0.972 0.405 12 5 5 12 0.4167 0.4167 1.0000 D 3 
 Host name	rsat
 Job started	2025-06-19.093658
 Job done	2025-06-19.093700
 Seconds	1.29
	user	1.3
	system	0.07
	cuser	0.23
;	csystem	0.04