/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5.tf
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5_vs_db_footprintDB-plants_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093641_2025-06-19.093641_ZnDYv6/results/discovered_motifs/oligos_6-8nt_m5/peak-motifs_oligos_6-8nt_m5.tf
		file1	1	14	47
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m5 FAR1/MA1382.1/JASPAR oligos_6-8nt_m5 FAR1:MA1382.1:JASPAR 0.703 0.657 14 15 14 15 0.9333 1.0000 0.9333 D 0
oligos_6-8nt_m5 FHY3/MA0557.1/JASPAR oligos_6-8nt_m5 FHY3:MA0557.1:JASPAR 0.703 0.603 14 12 12 14 0.8571 0.8571 1.0000 D 2
oligos_6-8nt_m5 fgenesh1_pg.C_Chr_14.0001000151/M0253_1.02/CISBP oligos_6-8nt_m5 fgenesh1_pg.C_Chr_14.0001000151:M0253_1.02:CISBP 0.763 0.545 14 10 10 14 0.7143 0.7143 1.0000 R 2
oligos_6-8nt_m5 bHLH172/UN0431.1/JASPAR oligos_6-8nt_m5 bHLH172:UN0431.1:JASPAR 0.751 0.537 14 10 10 14 0.7143 0.7143 1.0000 D 3
oligos_6-8nt_m5 ANAC092/UP00572A_1/UniPROBE oligos_6-8nt_m5 ANAC092:UP00572A_1:UniPROBE 0.720 0.495 14 13 11 16 0.6875 0.7857 0.8462 D 3
oligos_6-8nt_m5 FAR1/MA1382.2/JASPAR oligos_6-8nt_m5 FAR1:MA1382.2:JASPAR 0.761 0.489 14 9 9 14 0.6429 0.6429 1.0000 D 3
oligos_6-8nt_m5 AT5G64220/M0582_1.02/CISBP oligos_6-8nt_m5 AT5G64220:M0582_1.02:CISBP 0.719 0.462 14 9 9 14 0.6429 0.6429 1.0000 R 5
oligos_6-8nt_m5 CMTA2/MA0969.1/JASPAR oligos_6-8nt_m5 CMTA2:MA0969.1:JASPAR 0.719 0.462 14 9 9 14 0.6429 0.6429 1.0000 R 5
oligos_6-8nt_m5 FHY3/MA0557.2/JASPAR oligos_6-8nt_m5 FHY3:MA0557.2:JASPAR 0.790 0.451 14 8 8 14 0.5714 0.5714 1.0000 D 6
oligos_6-8nt_m5 T11I18.17/MA0936.1/JASPAR oligos_6-8nt_m5 T11I18.17:MA0936.1:JASPAR 0.789 0.451 14 8 8 14 0.5714 0.5714 1.0000 D 5
oligos_6-8nt_m5 ATNAC6/M1407_1.02/CISBP oligos_6-8nt_m5 ATNAC6:M1407_1.02:CISBP 0.701 0.450 14 9 9 14 0.6429 0.6429 1.0000 D 5
oligos_6-8nt_m5 XM_002866389.1/M1410_1.02/CISBP oligos_6-8nt_m5 XM_002866389.1:M1410_1.02:CISBP 0.715 0.429 14 10 9 15 0.6000 0.6429 0.9000 D 5
oligos_6-8nt_m5 ANAC079/M1405_1.02/CISBP oligos_6-8nt_m5 ANAC079:M1405_1.02:CISBP 0.742 0.424 14 8 8 14 0.5714 0.5714 1.0000 D 5
oligos_6-8nt_m5 NAC058/MA0938.1/JASPAR oligos_6-8nt_m5 NAC058:MA0938.1:JASPAR 0.742 0.424 14 8 8 14 0.5714 0.5714 1.0000 D 5
oligos_6-8nt_m5 NAC080/MA0939.1/JASPAR oligos_6-8nt_m5 NAC080:MA0939.1:JASPAR 0.741 0.423 14 8 8 14 0.5714 0.5714 1.0000 D 5
oligos_6-8nt_m5 e_gw1.159.34.1/M1412_1.02/CISBP oligos_6-8nt_m5 e_gw1.159.34.1:M1412_1.02:CISBP 0.704 0.423 14 10 9 15 0.6000 0.6429 0.9000 D 5
oligos_6-8nt_m5 FAR1.ampDAP/M0372/AthalianaCistrome oligos_6-8nt_m5 FAR1.ampDAP:M0372:AthalianaCistrome 0.703 0.416 14 21 13 22 0.5909 0.9286 0.6190 R -8
oligos_6-8nt_m5 NAC92/MA1044.2/JASPAR oligos_6-8nt_m5 NAC92:MA1044.2:JASPAR 0.723 0.413 14 8 8 14 0.5714 0.5714 1.0000 D 5
oligos_6-8nt_m5 CAMTA1/MA1197.2/JASPAR oligos_6-8nt_m5 CAMTA1:MA1197.2:JASPAR 0.759 0.405 14 9 8 15 0.5333 0.5714 0.8889 R 6
oligos_6-8nt_m5 AN1/EEAD0066/EEADannot oligos_6-8nt_m5 AN1:EEAD0066:EEADannot 0.705 0.403 14 8 8 14 0.5714 0.5714 1.0000 R 3 
 Host name	rsat
 Job started	2025-06-19.093706
 Job done	2025-06-19.093707
 Seconds	1.37
	user	1.37
	system	0.05
	cuser	0.25
;	csystem	0.02