/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093750_2025-06-19.093750_1W0rgp/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093750_2025-06-19.093750_1W0rgp/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093750_2025-06-19.093750_1W0rgp/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093750_2025-06-19.093750_1W0rgp/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093750_2025-06-19.093750_1W0rgp/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093750_2025-06-19.093750_1W0rgp/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093750_2025-06-19.093750_1W0rgp/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093750_2025-06-19.093750_1W0rgp/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093750_2025-06-19.093750_1W0rgp/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093750_2025-06-19.093750_1W0rgp/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2_vs_db_footprintDB-plants.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.093750_2025-06-19.093750_1W0rgp/results/discovered_motifs/oligos_6-8nt_m2/peak-motifs_oligos_6-8nt_m2.tf
		file1	1	12	17
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m2 CAMTA1/MA1197.1/JASPAR oligos_6-8nt_m2 CAMTA1:MA1197.1:JASPAR 0.715 0.605 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_6-8nt_m2 EICBP-B/UN0362.1/JASPAR oligos_6-8nt_m2 EICBP-B:UN0362.1:JASPAR 0.787 0.590 12 16 12 16 0.7500 1.0000 0.7500 D -2
oligos_6-8nt_m2 CAMTA1/MA1197.2/JASPAR oligos_6-8nt_m2 CAMTA1:MA1197.2:JASPAR 0.734 0.550 12 9 9 12 0.7500 0.7500 1.0000 R 3
oligos_6-8nt_m2 CBT/OsCBT/Athamap oligos_6-8nt_m2 CBT:OsCBT:Athamap 0.796 0.547 12 15 11 16 0.6875 0.9167 0.7333 R -4
oligos_6-8nt_m2 CMTA3/MA0970.1/JASPAR oligos_6-8nt_m2 CMTA3:MA0970.1:JASPAR 0.714 0.536 12 9 9 12 0.7500 0.7500 1.0000 R 1
oligos_6-8nt_m2 CAMTA3/M0581_1.02/CISBP oligos_6-8nt_m2 CAMTA3:M0581_1.02:CISBP 0.711 0.533 12 9 9 12 0.7500 0.7500 1.0000 R 1
oligos_6-8nt_m2 ADOF2/M0649_1.02/CISBP oligos_6-8nt_m2 ADOF2:M0649_1.02:CISBP 0.773 0.516 12 8 8 12 0.6667 0.6667 1.0000 D 0
oligos_6-8nt_m2 AT5G64220/M0582_1.02/CISBP oligos_6-8nt_m2 AT5G64220:M0582_1.02:CISBP 0.836 0.514 12 9 8 13 0.6154 0.6667 0.8889 R 4
oligos_6-8nt_m2 CMTA2/MA0969.1/JASPAR oligos_6-8nt_m2 CMTA2:MA0969.1:JASPAR 0.835 0.514 12 9 8 13 0.6154 0.6667 0.8889 R 4
oligos_6-8nt_m2 AT3G45610/M0650_1.02/CISBP oligos_6-8nt_m2 AT3G45610:M0650_1.02:CISBP 0.753 0.502 12 8 8 12 0.6667 0.6667 1.0000 D 0
oligos_6-8nt_m2 DOF5.6/M0657_1.02/CISBP oligos_6-8nt_m2 DOF5.6:M0657_1.02:CISBP 0.751 0.501 12 8 8 12 0.6667 0.6667 1.0000 D 0
oligos_6-8nt_m2 DOF5.6/MA0983.1/JASPAR oligos_6-8nt_m2 DOF5.6:MA0983.1:JASPAR 0.750 0.500 12 8 8 12 0.6667 0.6667 1.0000 D 0
oligos_6-8nt_m2 fgenesh1_pg.C_Chr_08.0001000114/M0664_1.02/CISBP oligos_6-8nt_m2 fgenesh1_pg.C_Chr_08.0001000114:M0664_1.02:CISBP 0.720 0.480 12 8 8 12 0.6667 0.6667 1.0000 D 0
oligos_6-8nt_m2 e_gw1.149.93.1/M0658_1.02/CISBP oligos_6-8nt_m2 e_gw1.149.93.1:M0658_1.02:CISBP 0.714 0.476 12 8 8 12 0.6667 0.6667 1.0000 D 0
oligos_6-8nt_m2 DOF5.3/MA1071.1/JASPAR oligos_6-8nt_m2 DOF5.3:MA1071.1:JASPAR 0.808 0.472 12 7 7 12 0.5833 0.5833 1.0000 D 0
oligos_6-8nt_m2 TMO6/M0654_1.02/CISBP oligos_6-8nt_m2 TMO6:M0654_1.02:CISBP 0.807 0.471 12 7 7 12 0.5833 0.5833 1.0000 D 0
oligos_6-8nt_m2 DOF4.7/M0652_1.02/CISBP oligos_6-8nt_m2 DOF4.7:M0652_1.02:CISBP 0.760 0.468 12 9 8 13 0.6154 0.6667 0.8889 D -1
oligos_6-8nt_m2 MYB124/MA1426.2/JASPAR oligos_6-8nt_m2 MYB124:MA1426.2:JASPAR 0.753 0.439 12 7 7 12 0.5833 0.5833 1.0000 D 4
oligos_6-8nt_m2 gw1.12.257.1/M0662_1.02/CISBP oligos_6-8nt_m2 gw1.12.257.1:M0662_1.02:CISBP 0.747 0.435 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_6-8nt_m2 CAMTA2/MA0969.2/JASPAR oligos_6-8nt_m2 CAMTA2:MA0969.2:JASPAR 0.849 0.425 12 6 6 12 0.5000 0.5000 1.0000 R 4
oligos_6-8nt_m2 CAMTA3/MA0970.2/JASPAR oligos_6-8nt_m2 CAMTA3:MA0970.2:JASPAR 0.845 0.422 12 6 6 12 0.5000 0.5000 1.0000 R 4
oligos_6-8nt_m2 DOF2.4/MA0982.1/JASPAR oligos_6-8nt_m2 DOF2.4:MA0982.1:JASPAR 0.710 0.414 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_6-8nt_m2 AtGRP7iCLIP/EEAD0145/EEADannot oligos_6-8nt_m2 AtGRP7iCLIP:EEAD0145:EEADannot 0.710 0.414 12 7 7 12 0.5833 0.5833 1.0000 R 0
oligos_6-8nt_m2 ATDOF2.4/M0648_1.02/CISBP oligos_6-8nt_m2 ATDOF2.4:M0648_1.02:CISBP 0.706 0.412 12 7 7 12 0.5833 0.5833 1.0000 D 1 
 Host name	rsat
 Job started	2025-06-19.093807
 Job done	2025-06-19.093809
 Seconds	1.38
	user	1.38
	system	0.06
	cuser	0.23
;	csystem	0.03