/var/www/html/rsat/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.094218_2025-06-19.094218_4xfDGW/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.094218_2025-06-19.094218_4xfDGW/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title m13 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.094218_2025-06-19.094218_4xfDGW/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.094218_2025-06-19.094218_4xfDGW/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/06/19/peak-motifs.2025-06-19.094218_2025-06-19.094218_4xfDGW/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	84
	Sum of sequence lengths      	22568
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	268
	Possible positions           	22484
 Sequences:
	#	length	ID
	1	55	CHLRE_06g284700v5
	2	110	CHLRE_08g360350v5
	3	58	CHLRE_13g570350v5
	4	1000	CHLRE_02g116750v5
	5	960	CHLRE_06g250250v5
	6	446	CHLRE_07g324200v5
	7	84	CHLRE_08g382300v5
	8	190	CHLRE_13g579550v5
	9	108	CHLRE_06g264550v5
	10	120	CHLRE_03g144667v5
	11	48	CHLRE_03g183200v5
	12	48	CHLRE_12g510400v5
	13	110	CHLRE_01g000850v5
	14	196	CHLRE_17g723550v5
	15	100	CHLRE_12g532100v5
	16	48	CHLRE_13g588100v5
	17	153	CHLRE_03g205050v5
	18	150	CHLRE_07g325762v5
	19	206	CHLRE_06g259150v5
	20	110	CHLRE_05g242300v5
	21	1000	CHLRE_10g434600v5
	22	100	CHLRE_17g728650v5
	23	132	CHLRE_14g625550v5
	24	110	CHLRE_03g146127v5
	25	442	CHLRE_14g625625v5
	26	49	CHLRE_09g399663v5
	27	130	CHLRE_06g275050v5
	28	130	CHLRE_13g567100v5
	29	100	CHLRE_12g530650v5
	30	241	CHLRE_12g550400v5
	31	1000	CHLRE_16g665650v5
	32	229	CHLRE_13g571200v5
	33	120	CHLRE_10g423500v5
	34	234	CHLRE_13g575800v5
	35	48	CHLRE_13g603750v5
	36	674	CHLRE_07g344950v5
	37	120	CHLRE_10g430150v5
	38	181	CHLRE_12g501150v5
	39	140	CHLRE_07g322500v5
	40	171	CHLRE_10g461650v5
	41	209	CHLRE_10g456300v5
	42	110	CHLRE_10g435250v5
	43	100	CHLRE_06g251450v5
	44	494	CHLRE_11g467668v5
	45	730	CHLRE_12g542950v5
	46	164	CHLRE_14g623700v5
	47	860	CHLRE_13g563150v5
	48	130	CHLRE_02g081600v5
	49	96	CHLRE_06g304650v5
	50	92	CHLRE_09g416000v5
	51	1000	CHLRE_05g237450v5
	52	561	CHLRE_16g686750v5
	53	154	CHLRE_03g199423v5
	54	420	CHLRE_09g409350v5
	55	98	CHLRE_06g290800v5
	56	1000	CHLRE_04g211800v5
	57	1000	CHLRE_10g432800v5
	58	103	CHLRE_02g111000v5
	59	364	CHLRE_06g288500v5
	60	180	CHLRE_03g144164v5
	61	130	CHLRE_10g436600v5
	62	176	CHLRE_16g657850v5
	63	48	CHLRE_12g513600v5
	64	98	CHLRE_16g664700v5
	65	589	CHLRE_12g501200v5
	66	140	CHLRE_13g572050v5
	67	180	CHLRE_12g499500v5
	68	120	CHLRE_09g403182v5
	69	140	CHLRE_02g095070v5
	70	890	CHLRE_03g164950v5
	71	120	CHLRE_07g330100v5
	72	98	CHLRE_01g001750v5
	73	110	CHLRE_03g175200v5
	74	1000	CHLRE_01g066552v5
	75	157	CHLRE_06g269752v5
	76	100	CHLRE_06g279150v5
	77	100	CHLRE_06g273300v5
	78	64	CHLRE_07g350500v5
	79	150	CHLRE_12g522350v5
	80	140	CHLRE_12g547700v5
	81	308	CHLRE_02g142350v5
	82	96	CHLRE_05g230600v5
	83	51	CHLRE_03g199311v5
	84	47	CHLRE_06g281050v5
 Oligonucleotide statistics:
	Total occurrences    	21859
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	22484
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	7	140
	2	-24	[-479,-460]	-469.5	8	160
	3	-23	[-459,-440]	-449.5	9	166
	4	-22	[-439,-420]	-429.5	10	190
	5	-21	[-419,-400]	-409.5	10	200
	6	-20	[-399,-380]	-389.5	10	200
	7	-19	[-379,-360]	-369.5	11	206
	8	-18	[-359,-340]	-349.5	11	220
	9	-17	[-339,-320]	-329.5	12	238
	10	-16	[-319,-300]	-309.5	12	240
	11	-15	[-299,-280]	-289.5	14	256
	12	-14	[-279,-260]	-269.5	14	280
	13	-13	[-259,-240]	-249.5	15	288
	14	-12	[-239,-220]	-229.5	17	306
	15	-11	[-219,-200]	-209.5	18	350
	16	-10	[-199,-180]	-189.5	19	362
	17	-9	[-179,-160]	-169.5	19	380
	18	-8	[-159,-140]	-149.5	20	394
	19	-7	[-139,-120]	-129.5	21	401
	20	-6	[-119,-100]	-109.5	25	462
	21	-5	[-99,-80]	-89.5	33	581
	22	-4	[-79,-60]	-69.5	47	816
	23	-3	[-59,-40]	-49.5	73	1276
	24	-2	[-39,-20]	-29.5	84	1525
	25	-1	[-19,0]	-9.5	84	1680
	26	0	[1,20]	10.5	84	1680
	27	1	[21,40]	30.5	84	1508
	28	2	[41,60]	50.5	73	1231
	29	3	[61,80]	70.5	47	786
	30	4	[81,100]	90.5	33	569
	31	5	[101,120]	110.5	25	451
	32	6	[121,140]	130.5	20	400
	33	7	[141,160]	150.5	20	393
	34	8	[161,180]	170.5	19	380
	35	9	[181,200]	190.5	19	361
	36	10	[201,220]	210.5	18	348
	37	11	[221,240]	230.5	16	301
	38	12	[241,260]	250.5	15	285
	39	13	[261,280]	270.5	14	279
	40	14	[281,300]	290.5	13	253
	41	15	[301,320]	310.5	12	240
	42	16	[321,340]	330.5	12	235
	43	17	[341,360]	350.5	11	220
	44	18	[361,380]	370.5	11	203
	45	19	[381,400]	390.5	10	200
	46	20	[401,420]	410.5	10	200
	47	21	[421,440]	430.5	10	189
	48	22	[441,460]	450.5	9	163
	49	23	[461,480]	470.5	8	159
	50	24	[481,500]	490.5	7	133

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
gg gg 2034 152.1 49 1.7e-12 2.8e-11 10.56 1 26 26 25 27 12 23 26 16 24 27 22 25 30 40 20 26 42 51 38 38 48 60 97 156 194 129 87 81 49 41 46 47 51 43 27 31 27 31 24 24 22 28 21 22 21 24 15 6 8 10
tt tt 959 145.4 49 1.7e-11 2.8e-10 9.56 2 1 3 4 10 3 2 5 10 16 11 3 10 13 9 19 11 6 10 11 18 18 40 75 66 70 79 101 86 41 25 21 9 3 6 12 15 9 11 10 20 9 9 13 3 2 10 9 4 2 6
aa aa 958 134.7 49 6.2e-10 1e-08 8.00 3 2 8 4 13 14 9 4 6 6 5 4 3 12 8 10 10 13 12 7 14 25 55 82 101 73 70 69 61 50 17 22 9 15 12 12 8 5 14 10 9 11 7 4 10 7 3 7 5 14 7
cg cg 1713 91.4 49 2.3e-04 0.0037 2.44 4 11 18 16 20 17 20 27 22 22 20 19 30 32 25 28 33 44 35 41 39 45 46 65 90 124 135 109 70 56 36 31 26 35 37 33 31 26 20 27 17 14 22 24 19 10 11 11 10 6 8
cc cc 1855 91.1 49 2.4e-04 0.0039 2.41 5 15 10 11 10 17 18 20 23 22 28 24 32 27 21 33 36 40 39 50 46 41 57 73 92 133 148 140 101 59 30 31 33 34 33 33 24 26 33 38 11 20 25 17 20 13 16 15 19 13 5
gc gc 2399 83.9 49 1.4e-03 0.022 1.65 6 21 17 21 20 22 31 30 30 29 30 38 40 42 35 47 44 55 48 52 57 64 76 99 142 172 184 143 123 66 55 45 36 39 42 48 35 24 32 25 22 27 28 41 24 18 18 19 19 12 12
at at 909 72.1 49 1.7e-02 0.28 0.56 7 2 7 7 8 6 8 2 12 6 10 7 8 12 10 12 15 7 10 7 14 35 37 74 69 83 81 61 60 37 21 19 21 10 13 10 10 8 8 9 12 8 6 5 7 8 12 5 3 4 3
ta ta 649 71.3 49 2.0e-02 0.33 0.49 8 4 3 6 4 11 7 7 4 7 4 6 6 5 7 8 11 8 4 4 11 20 35 61 45 36 41 48 43 36 22 17 8 9 8 6 12 8 6 6 7 6 5 7 3 3 6 3 5 4 6
ct ct 1265 65.6 49 5.7e-02 0.91 0.04 9 9 6 6 6 11 10 9 9 17 10 22 21 20 30 26 23 21 18 30 30 36 51 60 73 82 97 107 74 42 33 18 16 18 15 17 19 12 11 18 16 22 14 16 9 8 6 11 9 12 9
tg tg 1716 64.3 49 7.0e-02 1.1 -0.05 10 11 12 9 8 10 9 8 15 18 20 19 21 26 31 28 31 20 30 28 31 44 73 123 123 135 129 98 93 46 54 30 41 17 26 23 28 20 21 22 28 23 21 19 13 23 15 18 6 12 7
tc tc 1088 59.3 49 1.5e-01 2.4 -0.38 11 3 7 7 12 7 8 9 12 13 12 18 13 14 21 23 19 17 17 17 23 32 35 47 68 91 105 95 62 40 21 9 19 17 13 14 16 16 14 16 14 13 8 8 9 5 4 2 6 9 8
ga ga 983 59.1 49 1.5e-01 2.5 -0.39 12 3 9 7 9 8 4 6 6 6 5 10 10 11 10 13 15 11 18 22 19 36 38 65 94 87 67 58 49 28 28 17 11 20 18 14 19 15 8 14 12 11 10 2 12 12 12 10 5 4 5
gt gt 1280 53.4 49 3.1e-01 4.9 -0.69 13 8 8 10 9 10 8 12 13 15 14 13 13 13 19 20 22 17 24 16 19 23 47 106 88 90 104 74 68 49 38 20 28 16 17 21 24 24 23 14 22 13 13 12 10 15 8 8 4 10 8
ag ag 1229 53.3 49 3.1e-01 5 -0.70 14 10 7 12 10 15 13 13 11 9 12 19 16 5 11 21 18 21 24 21 26 31 49 84 111 97 83 75 62 40 29 19 12 18 18 25 20 19 20 5 10 11 12 12 14 12 12 7 11 9 8
ac ac 1162 46.5 49 5.8e-01 9.2 -0.97 15 4 9 7 9 18 10 13 10 13 10 9 13 13 12 16 19 25 13 18 27 36 40 63 75 79 86 98 63 39 29 26 17 23 25 17 19 19 8 23 13 14 12 6 5 9 9 14 13 8 6
ca ca 1660 41.5 49 7.7e-01 12 -1.09 16 10 10 14 15 19 20 15 21 15 22 23 19 13 17 26 29 33 23 19 38 44 57 82 118 134 142 126 98 52 30 30 27 28 31 29 17 23 21 18 16 16 15 13 13 14 14 15 18 12 6 
 Host name	rsat
 Job started	2025-06-19.094221
 Job done	2025-06-19.094221
 Seconds	0.28
	user	0.28
	system	0
	cuser	0
;	csystem	0