; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/20/dyad-analysis_2025-06-20.142223_oS3tSd_pssm_count_matrices.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/06/20/dyad-analysis_2025-06-20.142223_oS3tSd_pssm_count_matrices.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/06/20/dyad-analysis_2025-06-20.142223_oS3tSd_pssm_count_matrices.tf
; Input format transfac
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/06/20/dyad-analysis_2025-06-20.142223_oS3tSd_pssm_count_matrices.txt
; Output format tab
; pseudo-weight 1
a 1 3 0 0 0 1 3 3 1 2 4 6 6 1 2 2 2 1 1 3 2 2 3 0 0 0 2 3
c 3 0 0 10 10 3 1 1 3 4 3 2 2 5 2 0 0 2 3 3 4 4 3 0 0 10 5 3
g 3 5 10 0 0 3 4 4 3 3 2 0 0 2 5 2 2 3 4 3 1 1 3 10 10 0 0 3
t 3 2 0 0 0 3 2 2 3 1 1 2 2 2 1 6 6 4 2 1 3 3 1 0 0 0 3 1
//
a 0 9 0 0 0 2 15 15 0 9 1
c 8 1 15 0 0 0 0 0 15 4 7
g 2 0 0 0 0 3 0 0 0 0 0
t 5 5 0 15 15 10 0 0 0 2 7
//
a 13 13 0 20 0 4 0 0 20 15 1
c 1 4 20 0 20 2 0 0 0 1 12
g 2 0 0 0 0 1 0 0 0 1 1
t 4 3 0 0 0 13 20 20 0 3 6
//
a 19 34 58 0 0 58 58 0 7 23
c 6 10 0 0 0 0 0 0 7 10
g 10 7 0 0 0 0 0 0 10 6
t 23 7 0 58 58 0 0 58 34 19
//
a 8 6 0 14 0 3 3 1 11 9 0 14 0 2 0
c 0 3 14 0 14 1 2 1 2 1 14 0 14 0 1
g 3 0 0 0 0 1 0 1 1 0 0 0 0 1 1
t 3 5 0 0 0 9 9 11 0 4 0 0 0 11 12
//
a 3 7 14 0 14 9 4 5 4 4 0 0 14 6 3
c 4 2 0 14 0 3 4 1 2 2 0 14 0 3 1
g 2 2 0 0 0 1 0 2 3 4 0 0 0 2 5
t 5 3 0 0 0 1 6 6 5 4 14 0 0 3 5
//
a 4 1 0 7 0 4 1 4 0 1 0 1 2 4 2 2 5 2 5 2 4 3 3 3 5 7 0 0 4 4
c 0 2 0 0 0 2 2 0 1 0 1 0 1 0 2 0 0 2 1 2 2 2 2 0 0 0 0 7 1 2
g 1 1 7 0 7 1 2 2 4 1 3 2 2 0 1 1 1 1 1 2 1 0 1 0 1 0 7 0 0 0
t 2 3 0 0 0 0 2 1 2 5 3 4 2 3 2 4 1 2 0 1 0 2 1 4 1 0 0 0 2 1
//
a 1 0 7 0 0 2 1 2 2 2 0 0 0 2 2 2 2 0 7 0 3 1
c 2 1 0 7 0 0 1 0 3 2 2 3 3 1 1 3 0 0 0 7 1 3
g 3 2 0 0 7 2 1 3 0 1 1 2 2 2 3 0 1 7 0 0 2 3
t 1 4 0 0 0 3 4 2 2 2 4 2 2 2 1 2 4 0 0 0 1 0
//
; Host name rsat
; Job started 2025-06-20.142229
; Job done 2025-06-20.142229
; Seconds 0.12
; user 0.12
; system 0
; cuser 0
; csystem 0