/var/www/html/rsat/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title motifs_DEGs_post-c -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	226
	Sum of sequence lengths      	91329
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	404
	Possible positions           	91103
 Oligonucleotide statistics:
	Total occurrences    	86478
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	91103
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	45	900
	2	-24	[-479,-460]	-469.5	47	922
	3	-23	[-459,-440]	-449.5	49	961
	4	-22	[-439,-420]	-429.5	49	980
	5	-21	[-419,-400]	-409.5	52	996
	6	-20	[-399,-380]	-389.5	53	1043
	7	-19	[-379,-360]	-369.5	54	1077
	8	-18	[-359,-340]	-349.5	56	1106
	9	-17	[-339,-320]	-329.5	64	1217
	10	-16	[-319,-300]	-309.5	69	1338
	11	-15	[-299,-280]	-289.5	73	1421
	12	-14	[-279,-260]	-269.5	76	1488
	13	-13	[-259,-240]	-249.5	81	1576
	14	-12	[-239,-220]	-229.5	83	1631
	15	-11	[-219,-200]	-209.5	87	1685
	16	-10	[-199,-180]	-189.5	91	1794
	17	-9	[-179,-160]	-169.5	97	1892
	18	-8	[-159,-140]	-149.5	102	2001
	19	-7	[-139,-120]	-129.5	106	2084
	20	-6	[-119,-100]	-109.5	111	2176
	21	-5	[-99,-80]	-89.5	120	2320
	22	-4	[-79,-60]	-69.5	152	2689
	23	-3	[-59,-40]	-49.5	203	3687
	24	-2	[-39,-20]	-29.5	226	4254
	25	-1	[-19,0]	-9.5	226	4520
	26	0	[1,20]	10.5	226	4520
	27	1	[21,40]	30.5	226	4206
	28	2	[41,60]	50.5	203	3594
	29	3	[61,80]	70.5	150	2616
	30	4	[81,100]	90.5	120	2303
	31	5	[101,120]	110.5	111	2164
	32	6	[121,140]	130.5	106	2075
	33	7	[141,160]	150.5	102	1991
	34	8	[161,180]	170.5	97	1880
	35	9	[181,200]	190.5	91	1787
	36	10	[201,220]	210.5	86	1677
	37	11	[221,240]	230.5	83	1626
	38	12	[241,260]	250.5	81	1568
	39	13	[261,280]	270.5	76	1483
	40	14	[281,300]	290.5	73	1412
	41	15	[301,320]	310.5	69	1326
	42	16	[321,340]	330.5	64	1198
	43	17	[341,360]	350.5	56	1102
	44	18	[361,380]	370.5	54	1075
	45	19	[381,400]	390.5	53	1040
	46	20	[401,420]	410.5	51	992
	47	21	[421,440]	430.5	49	980
	48	22	[441,460]	450.5	49	958
	49	23	[461,480]	470.5	47	917
	50	24	[481,500]	490.5	45	855

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 3869 115.4 49 2.8e-07 4.5e-06 5.35 1 38 40 44 41 36 44 47 41 48 53 60 59 58 67 53 51 84 54 81 77 103 102 150 199 173 195 242 222 124 97 118 95 83 80 78 74 65 68 52 52 55 59 44 57 39 34 34 39 31 29
gg gg 7080 102.7 49 1.1e-05 0.00018 3.75 2 86 68 89 96 77 79 73 85 95 123 117 131 92 144 114 131 136 146 161 166 182 185 254 357 407 347 262 231 206 208 169 162 159 148 146 137 110 136 120 110 111 87 106 76 83 102 69 55 79 67
cc cc 7499 93.1 49 1.5e-04 0.0024 2.63 3 98 88 101 81 91 108 96 82 93 108 127 125 165 152 181 153 171 175 169 205 194 209 289 300 348 375 316 240 180 189 192 169 169 152 142 125 124 123 119 124 114 92 94 83 82 90 77 77 79 63
aa aa 3982 90.1 49 3.2e-04 0.0051 2.30 4 28 45 43 53 38 49 58 46 42 55 41 41 61 76 80 84 92 99 95 87 88 113 196 197 207 197 215 195 133 87 81 89 93 89 85 60 66 73 63 62 41 39 42 48 36 44 38 37 25 30
ta ta 2870 80.4 49 3.1e-03 0.05 1.30 5 18 29 23 23 31 27 34 37 36 36 40 47 60 50 39 56 61 65 62 60 66 109 140 133 116 112 145 152 102 57 69 66 55 75 57 53 56 50 57 52 50 37 28 32 32 29 28 20 32 26
at at 3729 64.8 49 6.5e-02 1 -0.02 6 25 32 31 36 40 44 43 54 52 52 56 55 56 50 48 71 63 71 71 79 75 125 165 179 214 194 182 180 123 94 103 78 67 85 73 73 75 62 66 56 60 58 39 44 47 37 39 41 34 32
ac ac 5055 59.0 49 1.6e-01 2.5 -0.40 7 48 59 49 45 54 53 67 63 64 63 67 90 100 96 99 106 131 130 140 122 111 157 191 209 220 248 243 197 151 132 119 107 111 96 113 109 102 91 79 84 77 48 67 59 58 40 44 48 53 45
gt gt 4907 53.3 49 3.1e-01 5 -0.70 8 47 51 57 48 51 41 47 51 73 79 78 87 86 96 92 87 81 123 129 124 144 133 191 231 207 225 224 205 137 117 108 107 116 103 93 94 87 90 95 78 76 81 53 59 43 53 57 59 53 60
ca ca 6874 50.4 49 4.2e-01 6.7 -0.82 9 71 75 64 71 79 67 86 80 95 94 101 111 99 112 129 145 164 165 184 176 161 185 268 296 350 355 341 292 172 187 154 156 147 147 147 143 127 112 110 87 96 80 87 82 81 62 78 86 58 59
cg cg 6387 47.4 49 5.4e-01 8.6 -0.93 10 76 67 75 65 66 70 59 85 92 100 96 114 122 118 134 125 124 152 135 137 155 165 248 327 308 324 253 226 189 172 155 159 143 126 119 135 126 107 105 114 98 95 70 72 72 68 61 70 55 58
ga ga 4225 45.5 49 6.1e-01 9.8 -0.99 11 34 33 44 45 47 46 52 58 59 66 68 56 72 75 75 92 84 99 88 98 113 137 177 204 234 243 181 142 123 107 97 93 85 71 82 87 93 87 65 68 57 49 47 50 51 43 31 35 41 41
ag ag 5162 43.3 49 7.0e-01 11 -1.05 12 50 47 46 61 58 50 58 57 79 75 89 69 76 99 99 104 115 125 130 134 147 157 235 246 260 276 243 190 131 115 104 124 106 109 100 97 109 90 78 76 66 56 51 62 63 56 46 50 48 50
ct ct 5053 35.1 49 9.3e-01 15 -1.17 13 50 48 50 56 51 52 61 55 58 63 75 81 106 98 100 108 123 106 114 130 127 168 198 223 228 241 260 205 145 124 123 111 119 107 100 85 77 88 81 83 78 59 72 57 57 51 59 44 57 41
tg tg 6541 34.5 49 9.4e-01 15 -1.18 14 50 66 81 74 67 75 70 79 81 95 100 105 117 115 121 129 115 138 145 153 167 200 261 299 355 311 291 251 192 165 160 148 158 131 130 106 107 114 117 106 95 109 87 82 64 66 83 68 76 66
tc tc 4272 33.5 49 9.6e-01 15 -1.18 15 50 39 36 42 40 34 47 50 67 63 71 68 77 72 77 85 97 94 109 114 118 122 158 200 191 226 216 183 115 103 113 83 91 86 83 83 81 71 70 56 66 60 47 46 47 43 51 50 40 41
gc gc 8973 33.1 49 9.6e-01 15 -1.19 16 92 95 101 104 96 107 92 103 119 133 135 149 155 158 180 192 186 199 187 200 213 254 369 431 484 451 392 321 251 231 209 235 209 197 179 154 146 146 146 144 126 129 109 107 105 94 105 99 76 78 
 Host name	rsat
 Job started	2025-06-27.165412
 Job done	2025-06-27.165412
 Seconds	0.56
	user	0.57
	system	0.03
	cuser	0.01
;	csystem	0