/var/www/html/rsat/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	11	148
		file1	2	10	180
		file1	3	10	203
		file1	4	10	73
		file1	5	11	206
		file1	6	11	152
		file1	7	12	285
		file1	8	12	194
		file1	9	14	539
		file1	10	11	124
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		11		148
		file2		2		10		180
		file2		3		10		203
		file2		4		10		73
		file2		5		11		206
		file2		6		11		152
		file2		7		12		285
		file2		8		12		194
		file2		9		14		539
		file2		10		11		124
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 0.958 0.958 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 0.958 0.958 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 0.957 0.878 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 0.957 0.878 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 0.905 0.830 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 0.905 0.830 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 0.783 0.717 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 0.783 0.717 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m5 0.797 0.613 12 11 10 13 0.7692 0.8333 0.9091 D -1
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m2 0.797 0.613 11 12 10 13 0.7692 0.9091 0.8333 D 1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 0.737 0.567 12 11 10 13 0.7692 0.8333 0.9091 D -1
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 0.737 0.567 11 12 10 13 0.7692 0.9091 0.8333 D 1
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 0.809 0.560 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 0.809 0.560 11 11 9 13 0.6923 0.8182 0.8182 D 2
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m3 0.828 0.532 11 12 9 14 0.6429 0.8182 0.7500 D -3
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m5 0.828 0.532 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m5 0.734 0.508 11 11 9 13 0.6923 0.8182 0.8182 D 2
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m5 0.734 0.508 11 11 9 13 0.6923 0.8182 0.8182 D -2 
 Host name	rsat
 Job started	2025-06-27.165434
 Job done	2025-06-27.165440
 Seconds	0.35
	user	0.35
	system	0.19
	cuser	4.49
;	csystem	0.89