RSAT - peak-motifs result

Analysis: motifs_DEGs_post-c (27/06/2025 16:54)

peak-motifs  -v 1 -title motifs_DEGs_post-c -i $RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: cccgccc (sig=6.85; e-value=1.4e-07) RC: gggcggg oligos_6nt_mkv2_m2 assembly: cagctg (sig=1.61; e-value=0.025) RC: cagctg oligos_6nt_mkv2_m3 assembly: gcacgc (sig=1.45; e-value=0.035) RC: gcgtgc oligos_6nt_mkv2_m4 assembly: agtcag (sig=1.42; e-value=0.038) RC: ctgact oligos_6nt_mkv2_m5 assembly: cccgccg (sig=6.85; e-value=1.4e-07) RC: cggcggg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: taccgta (sig=4.84; e-value=1.4e-05) RC: tacggta oligos_7nt_mkv2_m2 assembly: ccgccgcc (sig=3.92; e-value=0.00012) RC: ggcggcgg oligos_7nt_mkv2_m3 assembly: tcccgccc (sig=3.47; e-value=0.00034) RC: gggcggga oligos_7nt_mkv2_m4 assembly: cacacacgca (sig=2.59; e-value=0.0026) RC: tgcgtgtgtg oligos_7nt_mkv2_m5 assembly: cgccccc (sig=1.49; e-value=0.032) RC: gggggcg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=6.85; evalue=1.4e-07 yyCCCGCCcbc GVGGGCGGGRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 40 (17.70%) Max nb of predicted sites per peak: 4  (CHLRE_12g503200v5) Mean nb of predicted sites per peak: 1.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=1.61; evalue=0.025 wgCAGCTGcw WGCAGCTGCW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 40 (17.70%) Max nb of predicted sites per peak: 4  (CHLRE_17g708750v5) Mean nb of predicted sites per peak: 2.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=1.45; evalue=0.035 ayGCACGCac GTGCGTGCRT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 36 (15.93%) Max nb of predicted sites per peak: 28  (CHLRE_14g629200v5) Mean nb of predicted sites per peak: 2.36	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=1.42; evalue=0.038 msAGTCAGdw WHCTGACTSK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 45 (19.91%) Max nb of predicted sites per peak: 3  (CHLRE_17g717900v5) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=6.85; evalue=1.4e-07 cbCCCGCCmsc GSKGGCGGGVG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 49 (21.68%) Max nb of predicted sites per peak: 3  (CHLRE_16g687742v5) Mean nb of predicted sites per peak: 1.31	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=4.84; evalue=1.4e-05 vrTACcGTAyb VRTACGGTAYB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (11.06%) Max nb of predicted sites per peak: 6  (CHLRE_13g581700v5) Mean nb of predicted sites per peak: 2.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=3.92; evalue=0.00012 csCCGCCGCCsc GSGGCGGCGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (10.18%) Max nb of predicted sites per peak: 10  (CHLRE_17g731591v5) Mean nb of predicted sites per peak: 1.96	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=3.47; evalue=0.00034 syTCCCGCCChc GDGGGCGGGARS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 28 (12.39%) Max nb of predicted sites per peak: 3  (CHLRE_16g687742v5) Mean nb of predicted sites per peak: 1.36	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=2.59; evalue=0.0026 CACACACACACACA TGTGTGTGTGTGTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (7.52%) Max nb of predicted sites per peak: 114  (CHLRE_09g386700v5) Mean nb of predicted sites per peak: 28.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=1.49; evalue=0.032 chCGCCCCCkm KMGGGGGCGDG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 48 (21.24%) Max nb of predicted sites per peak: 3  (CHLRE_04g221450v5) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title motifs_DEGs_post-c -i $RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj

Warning: Not a single pattern was found in file tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/06/27/peak-motifs.2025-06-27.165408_2025-06-27.165408_kPhdjj/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab