peak-motifs ZF_uninj_H3K4me1only_introndistalonly

Motif discovery

Motif 1 positions_6-6nt_m1

k-mer sig=300; evalue=1e-300

aCaCACACACaCaC

GTGTGTGTGTGTGT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aCaCACACACaCaC

KLF9 MA1107.3 D 11 0.7857 0.740 0.582 NA NA

MSANTD3 MA1523.2 D 7 0.5000 0.821 0.410 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4244 (41.04%)
Max nb of predicted sites per peak: 188
(chr5:1759754-1760776)
Mean nb of predicted sites per peak: 11.62

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 positions_6-6nt_m2

k-mer sig=300; evalue=1e-300

wwaattaaaaaattatatttaaww

WWTTAAATATAATTTTTTAATTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwaattaaaaaattatatttaaww

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4109 (39.74%)
Max nb of predicted sites per peak: 105
(chr8:25142692-25143658)
Mean nb of predicted sites per peak: 4.95

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 positions_6-6nt_m3

k-mer sig=300; evalue=1e-300

wwaattaaaTaattttatTatTww

WWAATAATAAAATTATTTAATTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwaattaaaTaattttatTatTww

PHOX2B MA0681.3 R 12 0.5000 0.872 0.436 NA NA

Lhx3 MA0135.2 D 12 0.5000 0.868 0.434 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3774 (36.50%)
Max nb of predicted sites per peak: 104
(chr8:25142692-25143658)
Mean nb of predicted sites per peak: 6.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 positions_6-6nt_m4

k-mer sig=300; evalue=1e-300

svCAGCAGaGCCss

SSGGCTCTGCTGBS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svCAGCAGaGCCss

ZNF331 MA1726.2 D 10 0.7143 0.859 0.614 NA NA

ZNF317 MA1593.2 D 8 0.5714 0.961 0.549 NA NA

Zic2 MA1629.2 D 9 0.6429 0.757 0.487 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2384 (23.06%)
Max nb of predicted sites per peak: 4
(chr3:28112171-28113615)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 positions_6-6nt_m5

k-mer sig=300; evalue=1e-300

wwttATAtTATAww

WWTATAATATAAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwttATAtTATAww

PROP1 MA0715.1 R 10 0.6667 0.715 0.476 NA NA

TBP MA0108.3 R 7 0.5000 0.893 0.446 NA NA

Arid5a MA0602.2 R 8 0.5714 0.774 0.442 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2771 (26.80%)
Max nb of predicted sites per peak: 74
(chr8:25142692-25143658)
Mean nb of predicted sites per peak: 2.43

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6-6nt_m6

k-mer sig=300; evalue=1e-300

wwAatwtAatatAaTaaAATrtaa

TTAYATTTTATTATATTAWATTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwAatwtAatatAaTaaAATrtaa

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3303 (31.94%)
Max nb of predicted sites per peak: 88
(chr8:25142692-25143658)
Mean nb of predicted sites per peak: 3.88

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6-6nt_m7

k-mer sig=300; evalue=1e-300

vrCAGCAGAGAGAsr

YSTCTCTCTGCTGYB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vrCAGCAGAGAGAsr

ZNF317 MA1593.2 D 8 0.5333 0.963 0.514 NA NA

ZNF768 MA1731.2 R 9 0.6000 0.854 0.512 NA NA

Zic2 MA1629.2 D 9 0.6000 0.739 0.443 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3246 (31.39%)
Max nb of predicted sites per peak: 8
(chr7:33924752-33925683)
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6-6nt_m8

k-mer sig=300; evalue=1e-300

wattAaAttAaaaaatAtaAtAww

WWTATTATATTTTTTAATTTAATW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wattAaAttAaaaaatAtaAtAww

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4112 (39.77%)
Max nb of predicted sites per peak: 154
(chr11:40764223-40765439)
Mean nb of predicted sites per peak: 6.61

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6-6nt_m9

k-mer sig=300; evalue=1e-300

wwaTwawTawTwtTATTaTTwTtw

WAAWAATAATAAWAWTAWTWATWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwaTwawTawTwtTATTaTTwTtw

PHOX2B MA0681.3 R 12 0.5000 0.828 0.414 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3728 (36.05%)
Max nb of predicted sites per peak: 125
(chr11:44733852-44734631)
Mean nb of predicted sites per peak: 6.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6-6nt_m10

k-mer sig=300; evalue=1e-300

yyyCycCTCTCTCycy

RGRGAGAGAGGRGRRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyyCycCTCTCTCycy

ZNF768 MA1731.2 D 9 0.5625 0.754 0.424 NA NA

ZNF257 MA1710.2 R 9 0.5294 0.782 0.414 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4227 (40.88%)
Max nb of predicted sites per peak: 83
(chr8:36763730-36764825)
Mean nb of predicted sites per peak: 4.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 dyads_m1

k-mer sig=350.00; evalue=0

ysTCTGAArr

YYTTCAGASR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ysTCTGAArr

ZBTB26 MA1579.2 R 8 0.8000 0.738 0.591 NA NA

HAND2 MA1638.2 R 6 0.6000 0.821 0.493 NA NA

NEUROG2 MA1642.2 R 6 0.5455 0.804 0.439 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4010 (38.78%)
Max nb of predicted sites per peak: 7
(chr6:50057131-50058317)
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 dyads_m2

k-mer sig=350.00; evalue=0

rsACTGAAvr

YBTTCAGTSY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsACTGAAvr

ZBTB32 MA1580.1 R 10 1.0000 0.704 0.704 NA NA

Irf1 MA0050.4 D 9 0.7500 0.819 0.614 NA NA

Stat2 MA1623.2 D 9 0.8182 0.709 0.580 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4200 (40.62%)
Max nb of predicted sites per peak: 6
(chr8:40807472-40808293)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 dyads_m3

k-mer sig=350.00; evalue=0

CtCTCTCTCTCTCTCyCt

AGRGAGAGAGAGAGAGAG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CtCTCTCTCTCTCTCyCt

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2827 (27.34%)
Max nb of predicted sites per peak: 86
(chr11:19565641-19566713)
Mean nb of predicted sites per peak: 8.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 dyads_m4

k-mer sig=350.00; evalue=0

aaAAAwaAATra

TYATTTWTTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaAAAwaAATra

ONECUT3 MA0757.2 D 12 1.0000 0.775 0.775 NA NA

DUX4 MA0468.1 D 11 0.9167 0.700 0.642 NA NA

ONECUT1 MA0679.3 D 9 0.7500 0.800 0.600 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5415 (52.37%)
Max nb of predicted sites per peak: 24
(chr20:7741647-7742642)
Mean nb of predicted sites per peak: 1.93

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 dyads_m5

k-mer sig=350.00; evalue=0

CaCACACACACACACACACaC

GTGTGTGTGTGTGTGTGTGTG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CaCACACACACACACACACaC

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3198 (30.93%)
Max nb of predicted sites per peak: 225
(chr21:7657538-7658944)
Mean nb of predicted sites per peak: 15.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 dyads_m6

k-mer sig=350.00; evalue=0

asACTGCAsr

YSTGCAGTST

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor asACTGCAsr

ZBTB32 MA1580.1 R 10 1.0000 0.707 0.707 NA NA

RUNX2 MA0511.2 D 9 0.9000 0.706 0.636 NA NA

Ddit3::Cebpa MA0019.2 R 9 0.8182 0.708 0.579 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3457 (33.43%)
Max nb of predicted sites per peak: 9
(chr19:17485319-17488100)
Mean nb of predicted sites per peak: 1.35

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 dyads_m7

k-mer sig=350.00; evalue=0

tGtGTGTGTGTGTGTGTGtG

CACACACACACACACACACA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tGtGTGTGTGTGTGTGTGtG

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3037 (29.37%)
Max nb of predicted sites per peak: 194
(chr7:70792592-70794047)
Mean nb of predicted sites per peak: 14.54

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 dyads_m8

k-mer sig=350.00; evalue=0

rvAGTGAAvg

CBTTCACTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvAGTGAAvg

IRF7 MA0772.2 D 10 0.7692 0.720 0.554 NA NA

Irf1 MA0050.4 D 9 0.7500 0.727 0.545 NA NA

Nr2e1 MA0676.1 D 8 0.7273 0.714 0.519 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3774 (36.50%)
Max nb of predicted sites per peak: 7
(chr15:3349755-3351344)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 dyads_m9

k-mer sig=350.00; evalue=0

amAACAGTst

ASACTGTTKT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor amAACAGTst

OVOL1 MA1544.2 R 10 1.0000 0.711 0.711 NA NA

ZBTB32 MA1580.1 D 10 1.0000 0.705 0.705 NA NA

SOX18 MA1563.2 D 8 0.8000 0.718 0.574 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3470 (33.56%)
Max nb of predicted sites per peak: 5
(chr17:24207103-24208048)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 dyads_m10

k-mer sig=350.00; evalue=0

waAtaAaAtaAATAAww

WWTTATTTATTTTATTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waAtaAaAtaAATAAww

FOXD3 MA0041.3 D 14 0.8235 0.704 0.580 NA NA

ONECUT3 MA0757.2 D 12 0.7059 0.772 0.545 NA NA

FOXE1 MA1487.3 D 12 0.7059 0.722 0.510 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4839 (46.80%)
Max nb of predicted sites per peak: 49
(chr20:22120413-22122559)
Mean nb of predicted sites per peak: 3.89

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: ZF_uninj_H3K4me1only_introndistalonly_positional (02/07/2025 10:26)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aCaCACACACaCaC

KLF9 MA1107.3 D 11 0.7857 0.740 0.582 NA NA

MSANTD3 MA1523.2 D 7 0.5000 0.821 0.410 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwaattaaaaaattatatttaaww

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwaattaaaTaattttatTatTww

PHOX2B MA0681.3 R 12 0.5000 0.872 0.436 NA NA

Lhx3 MA0135.2 D 12 0.5000 0.868 0.434 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwAatwtAatatAaTaaAATrtaa

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wattAaAttAaaaaatAtaAtAww

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwaTwawTawTwtTATTaTTwTtw

PHOX2B MA0681.3 R 12 0.5000 0.828 0.414 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyyCycCTCTCTCycy

ZNF768 MA1731.2 D 9 0.5625 0.754 0.424 NA NA

ZNF257 MA1710.2 R 9 0.5294 0.782 0.414 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CtCTCTCTCTCTCTCyCt

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CaCACACACACACACACACaC

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tGtGTGTGTGTGTGTGTGtG

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: ZF_uninj_H3K4me1only_introndistalonly_positional (02/07/2025 10:26)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor aCaCACACACaCaC KLF9 MA1107.3 D 11 0.7857 0.740 0.582 NA NA MSANTD3 MA1523.2 D 7 0.5000 0.821 0.410 NA NA Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwaattaaaaaattatatttaaww Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwaattaaaTaattttatTatTww PHOX2B MA0681.3 R 12 0.5000 0.872 0.436 NA NA Lhx3 MA0135.2 D 12 0.5000 0.868 0.434 NA NA Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwAatwtAatatAaTaaAATrtaa Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wattAaAttAaaaaatAtaAtAww Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwaTwawTawTwtTATTaTTwTtw PHOX2B MA0681.3 R 12 0.5000 0.828 0.414 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor yyyCycCTCTCTCycy ZNF768 MA1731.2 D 9 0.5625 0.754 0.424 NA NA ZNF257 MA1710.2 R 9 0.5294 0.782 0.414 NA NA Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor CtCTCTCTCTCTCTCyCt Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor CaCACACACACACACACACaC Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor tGtGTGTGTGTGTGTGTGtG Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aCaCACACACaCaC

KLF9 MA1107.3 D 11 0.7857 0.740 0.582 NA NA

MSANTD3 MA1523.2 D 7 0.5000 0.821 0.410 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwaattaaaaaattatatttaaww

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwaattaaaTaattttatTatTww

PHOX2B MA0681.3 R 12 0.5000 0.872 0.436 NA NA

Lhx3 MA0135.2 D 12 0.5000 0.868 0.434 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwAatwtAatatAaTaaAATrtaa

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wattAaAttAaaaaatAtaAtAww

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwaTwawTawTwtTATTaTTwTtw

PHOX2B MA0681.3 R 12 0.5000 0.828 0.414 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyyCycCTCTCTCycy

ZNF768 MA1731.2 D 9 0.5625 0.754 0.424 NA NA

ZNF257 MA1710.2 R 9 0.5294 0.782 0.414 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CtCTCTCTCTCTCTCyCt

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CaCACACACACACACACACaC

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tGtGTGTGTGTGTGTGTGtG

Total matches= 0