RSAT - peak-motifs result

Analysis: ZF_uninj_activeenhancers_introndistal_positional (02/07/2025 10:26)

peak-motifs  -v 1 -title ZF_uninj_activeenhancers_introndistal_positional -i $RSAT/public_html/tmp/www-data/2025/07/02/peak-motifs.2025-07-02.101323_2025-07-02.101323_KQRyu3/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions -nmotifs 10 -minol 6 -maxol 6 -merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/07/02/peak-motifs.2025-07-02.101323_2025-07-02.101323_KQRyu3

motif discovery
positions_6-6nt	positions_6-6nt_m1 assembly: taaaattaaaaaataatata (sig=46.10; e-value=7.9e-47) RC: tatattattttttaatttta positions_6-6nt_m2 assembly: atattaaaaaataaaattaa (sig=46.10; e-value=7.9e-47) RC: ttaattttattttttaatat positions_6-6nt_m3 assembly: tatattatttaattttttaa (sig=46.10; e-value=7.9e-47) RC: ttaaaaaattaaataatata positions_6-6nt_m4 assembly: aaataaaattaaaaaatata (sig=46.10; e-value=7.9e-47) RC: tatattttttaattttattt positions_6-6nt_m5 assembly: aattttaatttaaaattaaa (sig=42.53; e-value=3e-43) RC: tttaattttaaattaaaatt positions_6-6nt_m6 assembly: ttaaaaaattattttttaat (sig=46.10; e-value=7.9e-47) RC: attaaaaaataattttttaa positions_6-6nt_m7 assembly: ataataattttttaattaaa (sig=44.67; e-value=2.1e-45) RC: tttaattaaaaaattattat positions_6-6nt_m8 assembly: acacacagc (sig=23.73; e-value=1.9e-24) RC: gctgtgtgt positions_6-6nt_m9 assembly: ccagaggagagagctg (sig=21.91; e-value=1.2e-22) RC: cagctctctcctctgg positions_6-6nt_m10 assembly: ctccagcaggaa (sig=17.93; e-value=1.2e-18) RC: ttcctgctggag	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_6-6nt	oligos_6-6nt_m1 assembly: tactgta (sig=80.12; e-value=7.6e-81) RC: tacagta oligos_6-6nt_m2 assembly: caaaacact (sig=46.58; e-value=2.6e-47) RC: agtgttttg oligos_6-6nt_m3 assembly: cttatc (sig=25.75; e-value=1.8e-26) RC: gataag oligos_6-6nt_m4 assembly: tatttta (sig=21.71; e-value=1.9e-22) RC: taaaata oligos_6-6nt_m5 assembly: tacatttca (sig=13.69; e-value=2e-14) RC: tgaaatgta oligos_6-6nt_m6 assembly: gacaga (sig=12.87; e-value=1.3e-13) RC: tctgtc oligos_6-6nt_m7 assembly: ccacag (sig=12.16; e-value=6.9e-13) RC: ctgtgg oligos_6-6nt_m8 assembly: atgtga (sig=11.65; e-value=2.2e-12) RC: tcacat oligos_6-6nt_m9 assembly: tacatac (sig=11.04; e-value=9.1e-12) RC: gtatgta oligos_6-6nt_m10 assembly: cacctca (sig=11.03; e-value=9.3e-12) RC: tgaggtg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
dyads	dyads_m1 assembly: tcctctctctctctcc (sig=350.00; e-value=0) RC: ggagagagagagagga dyads_m2 assembly: tacacaaacacacacact (sig=350.00; e-value=0) RC: agtgtgtgtgtttgtgta dyads_m3 assembly: ataaataaaata (sig=350.00; e-value=0) RC: tattttatttat dyads_m4 assembly: gagacagagagagga (sig=350.00; e-value=0) RC: tcctctctctgtctc dyads_m5 assembly: tactgta (sig=350.00; e-value=0) RC: tacagta dyads_m6 assembly: aatgta (sig=316.84; e-value=1.4e-317) RC: tacatt dyads_m7 assembly: aatgaa (sig=293.17; e-value=6.8e-294) RC: ttcatt dyads_m8 assembly: aacaga (sig=293.11; e-value=7.8e-294) RC: tctgtt dyads_m9 assembly: ataaataaaaata (sig=350.00; e-value=0) RC: tatttttatttat dyads_m10 assembly: aacact (sig=284.61; e-value=2.5e-285) RC: agtgtt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   positions_6-6nt_m1	k-mer sig=46.10; evalue=7.9e-47 wwtaaaattaaaaaAtAatataww WWTATATTATTTTTTAATTTTAWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwtaaaattaaaaaAtAatataww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1934 (45.83%) Max nb of predicted sites per peak: 98  (chr19:35215881-35219369) Mean nb of predicted sites per peak: 6.80	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   positions_6-6nt_m2	k-mer sig=46.10; evalue=7.9e-47 wwatattaaaaaAtAaaattaaww WWTTAATTTTATTTTTTAATATWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwatattaaaaaAtAaaattaaww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1994 (47.25%) Max nb of predicted sites per peak: 97  (chr19:35215881-35219369) Mean nb of predicted sites per peak: 6.76	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   positions_6-6nt_m3	k-mer sig=46.10; evalue=7.9e-47 wwtataTTattTaaTtttttaaww WWTTAAAAAATTAAATAATATAWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwtataTTattTaaTtttttaaww Lhx3 MA0135.2 R 12 0.5000 0.802 0.401 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1914 (45.36%) Max nb of predicted sites per peak: 101  (chr19:35215881-35219369) Mean nb of predicted sites per peak: 6.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   positions_6-6nt_m4	k-mer sig=46.10; evalue=7.9e-47 wwaaAtaaaAtwaaaaaatAtaww WWTATATTTTTTWATTTTATTTWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaaAtaaaAtwaaaaaatAtaww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2017 (47.80%) Max nb of predicted sites per peak: 106  (chr8:48196689-48197885) Mean nb of predicted sites per peak: 7.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   positions_6-6nt_m5	k-mer sig=42.53; evalue=3e-43 wwaattttaatttaaaattaaaww WWTTTAATTTTAAATTAAAATTWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaattttaatttaaaattaaaww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1413 (33.48%) Max nb of predicted sites per peak: 59  (chr25:1560093-1562455) Mean nb of predicted sites per peak: 3.95	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   positions_6-6nt_m6	k-mer sig=46.10; evalue=7.9e-47 wwttaaaaaattattttttaatww WWATTAAAAAATAATTTTTTAAWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwttaaaaaattattttttaatww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1613 (38.22%) Max nb of predicted sites per peak: 62  (chr8:10175593-10176654) Mean nb of predicted sites per peak: 4.34	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   positions_6-6nt_m7	k-mer sig=44.67; evalue=2.1e-45 wwataaTaattttttaattaaaww WWTTTAATTAAAAAATTATTATWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwataaTaattttttaattaaaww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1710 (40.52%) Max nb of predicted sites per peak: 115  (chr8:10175593-10176654) Mean nb of predicted sites per peak: 5.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   positions_6-6nt_m8	k-mer sig=23.73; evalue=1.9e-24 acACACACASccr YGGSTGTGTGTGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor acACACACASccr Zic2 MA1629.2 D 8 0.5714 0.742 0.424 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1974 (46.78%) Max nb of predicted sites per peak: 118  (chr3:3825598-3827282) Mean nb of predicted sites per peak: 6.95	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   positions_6-6nt_m9	k-mer sig=21.91; evalue=1.2e-22 sgCCaGaGGaGaGaGCtGvr YBCAGCTCTCTCCTCTGGCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor sgCCaGaGGaGaGaGCtGvr Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1211 (28.70%) Max nb of predicted sites per peak: 10  (chr17:27882955-27884301) Mean nb of predicted sites per peak: 1.41	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   positions_6-6nt_m10	k-mer sig=17.93; evalue=1.2e-18 ssCtCCAGCaGGaavv BBTTCCTGCTGGAGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCtCCAGCaGGaavv Zic2 MA1629.2 D 9 0.5625 0.815 0.458 NA NA Zic3 MA0697.3 D 7 0.4375 0.993 0.434 NA NA Zic1::Zic2 MA1628.2 D 7 0.4375 0.990 0.433 NA NA Total matches= 9 (6 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 874 (20.71%) Max nb of predicted sites per peak: 4  (chr8:7947503-7948707) Mean nb of predicted sites per peak: 1.23	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_6-6nt_m1	k-mer sig=80.12; evalue=7.6e-81 watACTGTAtw WATACAGTATW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor watACTGTAtw ZBTB32 MA1580.1 R 10 0.9091 0.924 0.840 NA NA OSR1 MA1542.2 D 8 0.7273 0.750 0.546 NA NA ZKSCAN1 MA1585.2 R 8 0.6667 0.707 0.471 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1297 (30.73%) Max nb of predicted sites per peak: 12  (chr5:16419536-16420514) Mean nb of predicted sites per peak: 1.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_6-6nt_m2	k-mer sig=46.58; evalue=2.6e-47 amCAAAACactmm KKAGTGTTTTGKT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor amCAAAACactmm SOX18 MA1563.2 D 8 0.6154 0.770 0.474 NA NA Sox5 MA0087.3 D 8 0.6154 0.751 0.462 NA NA SOX9 MA0077.2 R 8 0.6154 0.728 0.448 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 952 (22.56%) Max nb of predicted sites per peak: 4  (chr24:1722725-1723778) Mean nb of predicted sites per peak: 1.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   oligos_6-6nt_m3	k-mer sig=25.75; evalue=1.8e-26 cbCtTATCgs SCGATAAGVG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor cbCtTATCgs GATA6 MA1104.3 D 8 0.8000 0.934 0.747 NA NA TRPS1 MA1970.2 D 8 0.8000 0.933 0.747 NA NA Gata3 MA0037.5 D 8 0.8000 0.928 0.742 NA NA Total matches= 14 (11 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1109 (26.28%) Max nb of predicted sites per peak: 5  (chr13:26006453-26007920) Mean nb of predicted sites per peak: 1.21	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   oligos_6-6nt_m4	k-mer sig=21.71; evalue=1.9e-22 wwTATttTAtw WATAAAATAWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwTATttTAtw MEF2C MA0497.2 R 11 1.0000 0.705 0.705 NA NA MEF2A MA0052.5 R 10 0.9091 0.708 0.644 NA NA TBP MA0108.3 R 7 0.6364 0.857 0.545 NA NA Total matches= 20 (17 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2144 (50.81%) Max nb of predicted sites per peak: 31  (chr2:13086106-13087073) Mean nb of predicted sites per peak: 2.01	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   oligos_6-6nt_m5	k-mer sig=13.69; evalue=2e-14 wwtaCATTTCakw WMTGAAATGTAWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwtaCATTTCakw TEAD1 MA0090.4 D 9 0.6923 0.781 0.541 NA NA TEAD4 MA0809.3 D 8 0.6154 0.811 0.499 NA NA TEAD3 MA0808.1 D 8 0.6154 0.740 0.455 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 836 (19.81%) Max nb of predicted sites per peak: 4  (chr13:24982684-24984559) Mean nb of predicted sites per peak: 1.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   oligos_6-6nt_m6	k-mer sig=12.87; evalue=1.3e-13 caGACaGAsr YSTCTGTCTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor caGACaGAsr MEIS2 MA0774.1 D 8 0.8000 0.758 0.606 NA NA MEIS3 MA0775.2 D 7 0.7000 0.861 0.602 NA NA Neurod2 MA0668.3 D 7 0.6364 0.778 0.495 NA NA Total matches= 13 (10 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1847 (43.77%) Max nb of predicted sites per peak: 41  (chr23:29939959-29943754) Mean nb of predicted sites per peak: 1.64	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   oligos_6-6nt_m7	k-mer sig=12.16; evalue=6.9e-13 ssCCaCaGcs SGCTGTGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCCaCaGcs Runx1 MA0002.3 R 8 0.7273 0.886 0.644 NA NA ZNF354C MA0130.1 D 6 0.6000 0.932 0.559 NA NA Bcl11B MA1989.2 D 8 0.7273 0.747 0.543 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1888 (44.74%) Max nb of predicted sites per peak: 6  (chr13:26858767-26860267) Mean nb of predicted sites per peak: 1.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   oligos_6-6nt_m8	k-mer sig=11.65; evalue=2.2e-12 gmATGTGAcs SGTCACATKC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gmATGTGAcs USF1 MA0093.4 D 9 0.8182 0.838 0.686 NA NA MITF MA0620.4 R 9 0.8182 0.718 0.588 NA NA Arntl MA0603.2 R 8 0.8000 0.701 0.561 NA NA Total matches= 9 (6 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1897 (44.95%) Max nb of predicted sites per peak: 5  (chr11:6567325-6568258) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   oligos_6-6nt_m9	k-mer sig=11.04; evalue=9.1e-12 hatACATACws SWGTATGTATD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor hatACATACws POU5F1B MA0792.1 R 8 0.6667 0.710 0.473 NA NA POU2F1 MA0785.2 R 8 0.6667 0.706 0.471 NA NA Foxl2 MA1607.2 R 8 0.6154 0.741 0.456 NA NA Total matches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 679 (16.09%) Max nb of predicted sites per peak: 7  (chr2:5045652-5046636) Mean nb of predicted sites per peak: 1.22	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   oligos_6-6nt_m10	k-mer sig=11.03; evalue=9.3e-12 chCACCTCAsm KSTGAGGTGDG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor chCACCTCAsm XBP1 MA0844.2 D 11 1.0000 0.717 0.717 NA NA SREBF1 MA0595.1 D 10 0.9091 0.767 0.697 NA NA SREBF2 MA0596.1 R 10 0.9091 0.750 0.682 NA NA Total matches= 21 (18 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 565 (13.39%) Max nb of predicted sites per peak: 3  (chr25:29604403-29606396) Mean nb of predicted sites per peak: 1.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 21   dyads_m1	k-mer sig=350.00; evalue=0 CtYyCTCTCTCTCTCTCyCt AGRGAGAGAGAGAGAGRRAG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor CtYyCTCTCTCTCTCTCyCt Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1203 (28.51%) Max nb of predicted sites per peak: 55  (chr12:37846516-37847896) Mean nb of predicted sites per peak: 7.92	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 22   dyads_m2	k-mer sig=350.00; evalue=0 CaCACACACACACACACACaCa TGTGTGTGTGTGTGTGTGTGTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor CaCACACACACACACACACaCa Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1088 (25.78%) Max nb of predicted sites per peak: 192  (chr20:53035388-53038129) Mean nb of predicted sites per peak: 13.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 23   dyads_m3	k-mer sig=350.00; evalue=0 aaAtAAAtAAAatAaw WTTATTTTATTTATTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAtAAAtAAAatAaw FOXD3 MA0041.3 D 13 0.7647 0.748 0.572 NA NA FOXC2 MA0846.2 D 10 0.5882 0.777 0.457 NA NA PBX2 MA1113.3 D 9 0.5625 0.798 0.449 NA NA Total matches= 13 (10 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1959 (46.42%) Max nb of predicted sites per peak: 37  (chr1:25245954-25247710) Mean nb of predicted sites per peak: 2.80	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 24   dyads_m4	k-mer sig=350.00; evalue=0 GaGAGASAGAGAGAGrGaG CTCYCTCTCTCTSTCTCTC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor GaGAGASAGAGAGAGrGaG Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1208 (28.63%) Max nb of predicted sites per peak: 50  (chr3:51787462-51788859) Mean nb of predicted sites per peak: 7.28	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 25   dyads_m5	k-mer sig=350.00; evalue=0 waTACTGTAtw WATACAGTATW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waTACTGTAtw ZBTB32 MA1580.1 R 10 0.9091 0.914 0.831 NA NA OSR1 MA1542.2 D 8 0.7273 0.758 0.551 NA NA ZKSCAN1 MA1585.2 R 8 0.6667 0.713 0.475 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1289 (30.55%) Max nb of predicted sites per peak: 12  (chr5:16419536-16420514) Mean nb of predicted sites per peak: 1.45	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 26   dyads_m6	k-mer sig=316.84; evalue=1.4e-317 waAATGTAaw WTTACATTTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waAATGTAaw ZBTB32 MA1580.1 R 10 1.0000 0.701 0.701 NA NA TEAD2 MA1121.2 R 7 0.7000 0.783 0.548 NA NA DMRTA1 MA1707.2 R 8 0.6667 0.794 0.529 NA NA Total matches= 14 (11 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2084 (49.38%) Max nb of predicted sites per peak: 7  (chr1:38341456-38342878) Mean nb of predicted sites per peak: 1.49	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 27   dyads_m7	k-mer sig=293.17; evalue=6.8e-294 wrAATGAAwr YWTTCATTYW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wrAATGAAwr ZNF24 MA1124.1 R 10 0.7692 0.826 0.635 NA NA ONECUT1 MA0679.3 D 9 0.9000 0.702 0.632 NA NA Irf1 MA0050.4 D 9 0.7500 0.727 0.545 NA NA Total matches= 36 (33 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1606 (38.06%) Max nb of predicted sites per peak: 24  (chr6:29172344-29173309) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 28   dyads_m8	k-mer sig=293.11; evalue=7.8e-294 waAACAGAvv BBTCTGTTTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waAACAGAvv Stat2 MA1623.2 D 10 1.0000 0.834 0.834 NA NA ZIM3 MA1709.2 D 9 0.7500 0.896 0.672 NA NA ZNF341 MA1655.2 D 8 0.8000 0.704 0.563 NA NA Total matches= 35 (32 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1882 (44.60%) Max nb of predicted sites per peak: 8  (chr23:29939959-29943754) Mean nb of predicted sites per peak: 1.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 29   dyads_m9	k-mer sig=350.00; evalue=0 awAtaaATAaaaAtAww WWTATTTTTATTTATWT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor awAtaaATAaaaAtAww FOXD3 MA0041.3 D 13 0.7222 0.757 0.547 NA NA MEF2C MA0497.2 D 11 0.6471 0.742 0.480 NA NA FOXC1 MA0032.2 D 11 0.6471 0.737 0.477 NA NA Total matches= 9 (6 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1959 (46.42%) Max nb of predicted sites per peak: 79  (chr25:1560093-1562455) Mean nb of predicted sites per peak: 4.98	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 30   dyads_m10	k-mer sig=284.61; evalue=2.5e-285 mmAACACTgy RCAGTGTTKK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mmAACACTgy Nkx3-2 MA0122.4 D 9 0.8182 0.741 0.606 NA NA SOX18 MA1563.2 D 8 0.8000 0.735 0.588 NA NA Sox5 MA0087.3 D 8 0.8000 0.710 0.568 NA NA Total matches= 36 (33 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1914 (45.36%) Max nb of predicted sites per peak: 5  (chr7:33009807-33011065) Mean nb of predicted sites per peak: 1.36	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title ZF_uninj_activeenhancers_introndistal_positional -i $RSAT/public_html/tmp/www-data/2025/07/02/peak-motifs.2025-07-02.101323_2025-07-02.101323_KQRyu3/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions -nmotifs 10 -minol 6 -maxol 6 -merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/07/02/peak-motifs.2025-07-02.101323_2025-07-02.101323_KQRyu3