RSAT - peak-motifs result

Analysis: ZF_uninj_activeenhancers_introndistalonly_oligo6nt (02/07/2025 11:14)

peak-motifs  -v 1 -title ZF_uninj_activeenhancers_introndistalonly_oligo6nt -i $RSAT/public_html/tmp/www-data/2025/07/02/peak-motifs.2025-07-02.110950_2025-07-02.110950_AJ8Vps/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos -nmotifs 10 -minol 6 -maxol 6 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/07/02/peak-motifs.2025-07-02.110950_2025-07-02.110950_AJ8Vps

motif discovery
oligos_6nt_mkv4	oligos_6nt_mkv4_m1 assembly: tactgta (sig=80.12; e-value=7.6e-81) RC: tacagta oligos_6nt_mkv4_m2 assembly: caaaacact (sig=46.58; e-value=2.6e-47) RC: agtgttttg oligos_6nt_mkv4_m3 assembly: cttatc (sig=25.75; e-value=1.8e-26) RC: gataag oligos_6nt_mkv4_m4 assembly: tatttta (sig=21.71; e-value=1.9e-22) RC: taaaata oligos_6nt_mkv4_m5 assembly: tacatttca (sig=13.69; e-value=2e-14) RC: tgaaatgta oligos_6nt_mkv4_m6 assembly: gacaga (sig=12.87; e-value=1.3e-13) RC: tctgtc oligos_6nt_mkv4_m7 assembly: ccacag (sig=12.16; e-value=6.9e-13) RC: ctgtgg oligos_6nt_mkv4_m8 assembly: atgtga (sig=11.65; e-value=2.2e-12) RC: tcacat oligos_6nt_mkv4_m9 assembly: tacatac (sig=11.04; e-value=9.1e-12) RC: gtatgta oligos_6nt_mkv4_m10 assembly: cacctca (sig=11.03; e-value=9.3e-12) RC: tgaggtg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv4_m1	k-mer sig=80.12; evalue=7.6e-81 watACTGTAtw WATACAGTATW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor watACTGTAtw ZBTB32 MA1580.1 R 10 0.9091 0.924 0.840 NA NA OSR1 MA1542.2 D 8 0.7273 0.750 0.546 NA NA ZKSCAN1 MA1585.2 R 8 0.6667 0.707 0.471 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1297 (30.73%) Max nb of predicted sites per peak: 12  (chr5:16419536-16420514) Mean nb of predicted sites per peak: 1.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv4_m2	k-mer sig=46.58; evalue=2.6e-47 amCAAAACactmm KKAGTGTTTTGKT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor amCAAAACactmm SOX18 MA1563.2 D 8 0.6154 0.770 0.474 NA NA Sox5 MA0087.3 D 8 0.6154 0.751 0.462 NA NA SOX9 MA0077.2 R 8 0.6154 0.728 0.448 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 952 (22.56%) Max nb of predicted sites per peak: 4  (chr24:1722725-1723778) Mean nb of predicted sites per peak: 1.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv4_m3	k-mer sig=25.75; evalue=1.8e-26 cbCtTATCgs SCGATAAGVG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor cbCtTATCgs GATA6 MA1104.3 D 8 0.8000 0.934 0.747 NA NA TRPS1 MA1970.2 D 8 0.8000 0.933 0.747 NA NA Gata3 MA0037.5 D 8 0.8000 0.928 0.742 NA NA Total matches= 14 (11 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1109 (26.28%) Max nb of predicted sites per peak: 5  (chr13:26006453-26007920) Mean nb of predicted sites per peak: 1.21	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv4_m4	k-mer sig=21.71; evalue=1.9e-22 wwTATttTAtw WATAAAATAWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwTATttTAtw MEF2C MA0497.2 R 11 1.0000 0.705 0.705 NA NA MEF2A MA0052.5 R 10 0.9091 0.708 0.644 NA NA TBP MA0108.3 R 7 0.6364 0.857 0.545 NA NA Total matches= 20 (17 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2144 (50.81%) Max nb of predicted sites per peak: 31  (chr2:13086106-13087073) Mean nb of predicted sites per peak: 2.01	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv4_m5	k-mer sig=13.69; evalue=2e-14 wwtaCATTTCakw WMTGAAATGTAWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwtaCATTTCakw TEAD1 MA0090.4 D 9 0.6923 0.781 0.541 NA NA TEAD4 MA0809.3 D 8 0.6154 0.811 0.499 NA NA TEAD3 MA0808.1 D 8 0.6154 0.740 0.455 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 836 (19.81%) Max nb of predicted sites per peak: 4  (chr13:24982684-24984559) Mean nb of predicted sites per peak: 1.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6nt_mkv4_m6	k-mer sig=12.87; evalue=1.3e-13 caGACaGAsr YSTCTGTCTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor caGACaGAsr MEIS2 MA0774.1 D 8 0.8000 0.758 0.606 NA NA MEIS3 MA0775.2 D 7 0.7000 0.861 0.602 NA NA Neurod2 MA0668.3 D 7 0.6364 0.778 0.495 NA NA Total matches= 13 (10 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1847 (43.77%) Max nb of predicted sites per peak: 41  (chr23:29939959-29943754) Mean nb of predicted sites per peak: 1.64	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6nt_mkv4_m7	k-mer sig=12.16; evalue=6.9e-13 ssCCaCaGcs SGCTGTGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCCaCaGcs Runx1 MA0002.3 R 8 0.7273 0.886 0.644 NA NA ZNF354C MA0130.1 D 6 0.6000 0.932 0.559 NA NA Bcl11B MA1989.2 D 8 0.7273 0.747 0.543 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1888 (44.74%) Max nb of predicted sites per peak: 6  (chr13:26858767-26860267) Mean nb of predicted sites per peak: 1.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6nt_mkv4_m8	k-mer sig=11.65; evalue=2.2e-12 gmATGTGAcs SGTCACATKC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gmATGTGAcs USF1 MA0093.4 D 9 0.8182 0.838 0.686 NA NA MITF MA0620.4 R 9 0.8182 0.718 0.588 NA NA Arntl MA0603.2 R 8 0.8000 0.701 0.561 NA NA Total matches= 9 (6 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1897 (44.95%) Max nb of predicted sites per peak: 5  (chr11:6567325-6568258) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6nt_mkv4_m9	k-mer sig=11.04; evalue=9.1e-12 hatACATACws SWGTATGTATD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor hatACATACws POU5F1B MA0792.1 R 8 0.6667 0.710 0.473 NA NA POU2F1 MA0785.2 R 8 0.6667 0.706 0.471 NA NA Foxl2 MA1607.2 R 8 0.6154 0.741 0.456 NA NA Total matches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 679 (16.09%) Max nb of predicted sites per peak: 7  (chr2:5045652-5046636) Mean nb of predicted sites per peak: 1.22	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6nt_mkv4_m10	k-mer sig=11.03; evalue=9.3e-12 chCACCTCAsm KSTGAGGTGDG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor chCACCTCAsm XBP1 MA0844.2 D 11 1.0000 0.717 0.717 NA NA SREBF1 MA0595.1 D 10 0.9091 0.767 0.697 NA NA SREBF2 MA0596.1 R 10 0.9091 0.750 0.682 NA NA Total matches= 21 (18 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 565 (13.39%) Max nb of predicted sites per peak: 3  (chr25:29604403-29606396) Mean nb of predicted sites per peak: 1.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title ZF_uninj_activeenhancers_introndistalonly_oligo6nt -i $RSAT/public_html/tmp/www-data/2025/07/02/peak-motifs.2025-07-02.110950_2025-07-02.110950_AJ8Vps/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos -nmotifs 10 -minol 6 -maxol 6 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/07/02/peak-motifs.2025-07-02.110950_2025-07-02.110950_AJ8Vps