peak-motifs Med_uninj_H3K27ac+-H3K4me1

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=22.88; evalue=1.3e-23

watACTGTAww

WWTACAGTATW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor watACTGTAww

ZBTB32 MA1580.1 R 10 0.9091 0.925 0.841 NA NA

OSR1 MA1542.2 D 8 0.7273 0.749 0.544 NA NA

ZKSCAN1 MA1585.2 R 8 0.6667 0.706 0.470 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 565 (17.02%)
Max nb of predicted sites per peak: 5
(9:20386829-20390121)
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=16.72; evalue=1.9e-17

ytCtTATCkg

CMGATAAGAR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ytCtTATCkg

GATA6 MA1104.3 D 8 0.8000 0.940 0.752 NA NA

TRPS1 MA1970.2 D 8 0.8000 0.939 0.751 NA NA

Gata3 MA0037.5 D 8 0.8000 0.935 0.748 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 886 (26.69%)
Max nb of predicted sites per peak: 4
(6:20324784-20327946)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=13.35; evalue=4.5e-14

sbCTGCAGvs

SBCTGCAGVS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sbCTGCAGvs

Zic3 MA0697.3 R 7 0.7000 0.722 0.505 NA NA

Zic1::Zic2 MA1628.2 D 7 0.7000 0.713 0.499 NA NA

TCF12 MA1648.2 R 6 0.5455 0.817 0.445 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1587 (47.80%)
Max nb of predicted sites per peak: 16
(11:25931247-25933671)
Mean nb of predicted sites per peak: 2.92

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=12.59; evalue=2.6e-13

rggGGAGGGGArg

CYTCCCCTCCCCY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rggGGAGGGGArg

ZNF148 MA1653.2 R 10 0.7692 0.945 0.727 NA NA

PATZ1 MA1961.2 D 11 0.8462 0.791 0.669 NA NA

ZNF281 MA1630.3 D 10 0.7692 0.842 0.648 NA NA

Total matches= 24 (21 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1333 (40.15%)
Max nb of predicted sites per peak: 28
(20:9462670-9468027)
Mean nb of predicted sites per peak: 2.34

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=12.51; evalue=3.1e-13

wwtAAAATAww

WWTATTTTAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtAAAATAww

MEF2C MA0497.2 D 11 1.0000 0.804 0.804 NA NA

MEF2A MA0052.5 D 10 0.9091 0.807 0.734 NA NA

Hmga1 MA2124.1 R 8 0.7273 0.827 0.601 NA NA

Total matches= 20 (17 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1272 (38.31%)
Max nb of predicted sites per peak: 7
(23:14087303-14089070)
Mean nb of predicted sites per peak: 1.45

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_mkv4_m6

k-mer sig=10.96; evalue=1.1e-11

wwtACATTTCakh

DMTGAAATGTAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtACATTTCakh

TEAD1 MA0090.4 D 9 0.6923 0.784 0.542 NA NA

TEAD4 MA0809.3 D 8 0.6154 0.808 0.497 NA NA

TEAD3 MA0808.1 D 8 0.6154 0.733 0.451 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 705 (21.23%)
Max nb of predicted sites per peak: 3
(7:8547626-8550042)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_mkv4_m7

k-mer sig=9.51; evalue=3.1e-10

rmagaCAAAACAra

TYTGTTTTGTCTKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmagaCAAAACAra

Foxj3 MA0851.2 D 9 0.6429 0.725 0.466 NA NA

ZNF384 MA1125.2 D 8 0.5714 0.776 0.443 NA NA

FOXN3 MA1489.1 D 8 0.5714 0.736 0.421 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 755 (22.74%)
Max nb of predicted sites per peak: 4
(13:5163125-5165044)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_mkv4_m8

k-mer sig=8.10; evalue=7.9e-09

mwGTAAACtaaa

TTTAGTTTACWK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mwGTAAACtaaa

Foxj3 MA0851.2 D 9 0.7500 0.835 0.626 NA NA

Foxq1 MA0040.2 R 10 0.8333 0.741 0.618 NA NA

FOXP2 MA0593.2 D 9 0.7500 0.823 0.617 NA NA

Total matches= 32 (29 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 442 (13.31%)
Max nb of predicted sites per peak: 3
(7:3941338-3947740)
Mean nb of predicted sites per peak: 1.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_mkv4_m9

k-mer sig=7.97; evalue=1.1e-08

rraAGAAAAGra

TYCTTTTCTTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rraAGAAAAGra

ZNF677 MA2101.1 D 11 0.8462 0.777 0.658 NA NA

HOXB13 MA0901.3 D 9 0.7500 0.717 0.538 NA NA

Gata3 MA0037.5 R 8 0.6667 0.782 0.521 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 706 (21.27%)
Max nb of predicted sites per peak: 3
(7:30367658-30370654)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_mkv4_m10

k-mer sig=7.79; evalue=1.6e-08

wmATGCAAaa

TTTTGCATKW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmATGCAAaa

POU2F3 MA0627.3 D 9 0.9000 0.891 0.802 NA NA

POU3F1 MA0786.2 D 10 1.0000 0.796 0.796 NA NA

HLF MA0043.4 D 9 0.9000 0.822 0.740 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 903 (27.20%)
Max nb of predicted sites per peak: 4
(19:12820647-12825139)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: Med_uninj_H3K27ac+-H3K4me1_introndistalonly (02/07/2025 13:19)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results