; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/07/10/oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/07/10/oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/07/10/oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/07/10/oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/07/10/oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 65 67 9 18 23 10 1 23 5 7 88 63
c 153 84 306 314 5 312 335 9 321 317 68 126
g 76 154 23 11 314 12 9 316 17 16 148 88
t 62 51 18 13 14 22 11 8 13 16 52 79
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m1_rc.png
;
a 138 159 65 27 430 430 48 423 421 367 200 179 141
c 85 75 17 24 6 10 24 10 14 21 78 49 89
g 106 79 32 391 9 5 368 14 8 49 98 104 106
t 127 143 342 14 11 11 16 9 13 19 80 124 120
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m2_rc.png
;
a 433 474 871 943 989 972 931 293 909 893 889 213 355 343
c 195 210 74 39 24 27 53 83 57 52 47 57 195 217
g 188 177 68 43 22 30 40 75 58 46 55 63 212 184
t 261 216 64 52 42 48 53 626 53 86 86 744 315 333
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m3_rc.png
;
a 47 41 21 21 17 13 20 23 20 9 5 20 8 12 27 33 42 46
c 79 100 41 164 184 32 70 194 2 197 211 13 181 201 14 71 111 66
g 52 54 148 19 16 177 22 9 206 9 7 197 24 8 179 102 44 96
t 59 42 27 33 20 15 125 11 9 22 14 7 24 16 17 31 40 29
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m4_rc.png
;
a 56 44 137 7 5 158 5 1 155 9 49 61
c 29 41 3 13 3 3 12 10 6 136 45 20
g 53 32 17 141 10 0 145 6 1 7 20 50
t 27 48 8 4 147 4 3 148 3 13 51 34
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m5_rc.png
;
a 37 45 37 14 13 10 7 15 18 10 6 118 9 31 140 33 38
c 105 45 95 190 7 22 213 3 11 202 7 32 169 28 26 87 66
g 53 102 77 12 211 198 4 212 200 8 201 66 35 154 45 74 98
t 42 45 28 21 6 7 13 7 8 17 23 21 24 24 26 43 35
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m6_rc.png
;
a 19 24 3 7 4 4 6 6 3 4 8 3 8 25 14
c 27 23 90 6 74 84 73 3 91 87 5 78 78 19 38
g 21 21 0 9 4 6 7 8 0 2 10 5 3 21 21
t 30 29 4 75 15 3 11 80 3 4 74 11 8 32 24
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m7_rc.png
;
a 44 68 12 2 6 200 5 7 17 9 46 68
c 96 85 13 242 237 5 237 231 6 231 101 56
g 46 55 217 5 2 47 8 6 221 9 58 83
t 70 48 14 7 11 4 6 12 12 7 51 49
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m8_rc.png
;
a 42 40 2 174 13 5 173 7 7 26 47 56
c 37 48 186 7 5 183 6 10 185 16 56 67
g 63 83 4 12 180 6 19 179 4 150 73 46
t 58 29 8 7 2 6 2 4 4 8 24 31
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m9_rc.png
;
a 215 246 472 126 109 525 518 124 526 508 516 472 242 188
c 111 78 35 28 31 12 13 28 25 24 20 35 97 110
g 131 157 28 366 422 32 27 408 26 33 40 47 119 138
t 130 106 52 67 25 18 29 27 10 22 11 33 129 151
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m10_rc.png
;
a 181 190 71 28 25 592 31 19 611 180 149
c 231 214 38 639 650 20 633 664 26 228 241
g 135 162 575 25 21 68 24 22 49 145 195
t 173 154 36 28 24 40 32 15 34 167 135
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m11_rc.png
;
a 91 65 280 0 0 0 280 0 55 67
c 55 111 0 0 0 280 0 0 49 67
g 67 49 0 0 280 0 0 0 111 55
t 67 55 0 280 0 0 0 280 65 91
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m12_rc.png
;
a 26 41 30 12 16 10 4 8 12 9 7 107 5 19 43 37 28
c 96 41 96 160 5 15 186 7 11 185 6 35 158 22 94 62 59
g 47 88 62 14 175 183 2 188 175 6 173 53 29 148 45 67 88
t 39 38 20 22 12 0 16 5 10 8 22 13 16 19 26 42 33
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m13_rc.png
;
a 42 36 0 134 134 0 0 134 46 36
c 23 21 0 0 0 0 0 0 25 35
g 36 35 134 0 0 134 134 0 43 42
t 33 42 0 0 0 0 0 0 20 21
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m14_rc.png
;
a 28 29 136 5 9 137 3 6 5 7 48 46
c 61 51 5 147 6 10 157 4 4 154 34 45
g 51 70 18 8 151 18 3 155 155 4 59 41
t 29 19 10 9 3 4 6 4 5 4 28 37
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m15_rc.png
;
a 43 29 6 9 4 7 8 2 3 126 33 34
c 53 58 3 138 144 2 16 149 4 18 54 42
g 31 33 143 5 5 146 13 5 149 5 44 58
t 31 38 6 6 5 3 121 2 2 9 27 24
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m16_rc.png
;
a 180 182 607 36 39 645 37 36 642 194 172
c 248 245 38 620 629 8 632 646 26 207 231
g 172 146 44 40 21 37 21 26 34 143 160
t 125 152 36 29 36 35 35 17 23 181 162
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m17_rc.png
;
a 71 25 0 0 129 0 0 129 29 44
c 13 12 0 0 0 0 0 0 37 29
g 21 66 129 129 0 129 0 0 26 12
t 24 26 0 0 0 0 129 0 37 44
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m18_rc.png
;
a 31 69 0 0 185 0 0 185 59 50
c 66 31 0 185 0 0 185 0 47 62
g 40 34 0 0 0 0 0 0 28 26
t 48 51 185 0 0 185 0 0 51 47
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m19_rc.png
;
a 64 180 0 324 0 324 0 324 58 188
c 39 35 0 0 0 0 0 0 51 33
g 33 51 0 0 0 0 0 0 35 39
t 188 58 324 0 324 0 324 0 180 64
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m20.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/07/10//oligo-analysis_2025-07-10.135435_0BOAjr_pssm_count_matrices_logo_m20_rc.png
;
; Host name rsat
; Job started 2025-07-10.135451
; Job done 2025-07-10.135457
; Seconds 0.35
; user 0.35
; system 0.17
; cuser 5.1
; csystem 0.83