peak-motifs pr1079_vs

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=6.93; evalue=1.2e-07

scWTYCACAwtkyWsy

RSWRMAWTGTGRAWGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scWTYCACAwtkyWsy

Total matches= 0

No match

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scWTYCACAwtkyWsy

homer_91_Foxh1 homer_91_Foxh1 R 11 0.6471 0.840 0.543 NA NA

homer_249_RUNX2 homer_249_RUNX2 D 12 0.7500 0.701 0.526 NA NA

homer_248_RUNX1 homer_248_RUNX1 D 10 0.6250 0.723 0.452 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scWTYCACAwtkyWsy

FOXH1 MA0479.2 D 8 0.5000 0.877 0.438 NA NA

Runx1 MA0002.3 R 9 0.5625 0.754 0.424 NA NA

Bcl11B MA1989.2 D 9 0.5625 0.745 0.419 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 4
(ENST00000456174.6)
Mean nb of predicted sites per peak: 4.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=3.52; evalue=0.0003

wGAGAAAAwyG

CRWTTTTCTCW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wGAGAAAAwyG

TAL1_disc2 TAL1_disc2 D 9 0.8182 0.700 0.573 NA NA

ZNF75A_1 ZNF75A_1 R 10 0.7692 0.712 0.548 NA NA

GATA_known22 GATA_known22 D 8 0.7273 0.715 0.520 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wGAGAAAAwyG

homer_238_Rbpj1 homer_238_Rbpj1 R 8 0.6154 0.716 0.441 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wGAGAAAAwyG

ZNF75A MA2097.1 R 10 0.7692 0.722 0.555 NA NA

ZNF384 MA1125.2 D 8 0.7273 0.715 0.520 NA NA

PRDM1 MA0508.4 R 7 0.6364 0.805 0.513 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 2
(ENST00000456174.6)
Mean nb of predicted sites per peak: 2.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=3.52; evalue=0.0003

TTTAGACCTAAG

CTTAGGTCTAAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TTTAGACCTAAG

HNF4_disc3 HNF4_disc3 D 9 0.7500 0.701 0.525 NA NA

RARA_10 RARA_10 R 10 0.5882 0.748 0.440 NA NA

NR2F6_4 NR2F6_4 R 10 0.5882 0.720 0.424 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TTTAGACCTAAG

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TTTAGACCTAAG

Rarg MA0859.2 R 10 0.5882 0.740 0.436 NA NA

Nr2F6 MA0728.1 R 10 0.5882 0.720 0.424 NA NA

SMAD3 MA0795.1 D 8 0.5714 0.702 0.401 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 1
(ENST00000456174.6)
Mean nb of predicted sites per peak: 1.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=3.52; evalue=0.0003

sswGGGGAAGmCTk

MAGKCTTCCCCWSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sswGGGGAAGmCTk

NFKB_disc2 NFKB_disc2 D 12 0.8571 0.728 0.624 NA NA

MZF1_1 MZF1_1 D 8 0.5714 0.905 0.517 NA NA

SPI1_known1 SPI1_known1 D 8 0.5714 0.869 0.497 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sswGGGGAAGmCTk

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sswGGGGAAGmCTk

ZNF75D MA1601.2 D 12 0.8571 0.732 0.628 NA NA

Wt1 MA1627.2 R 10 0.7143 0.700 0.500 NA NA

RELB MA1117.2 R 7 0.5000 0.819 0.409 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 2
(ENST00000456174.6)
Mean nb of predicted sites per peak: 2.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=3.52; evalue=0.0003

GAAGACTGwsAs

STSWCAGTCTTC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GAAGACTGwsAs

SMAD3_1 SMAD3_1 R 9 0.7500 0.700 0.525 NA NA

MEIS2_3 MEIS2_3 R 7 0.5833 0.747 0.436 NA NA

MEIS3_4 MEIS3_4 R 7 0.5833 0.745 0.434 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GAAGACTGwsAs

homer_165_Meis1 homer_165_Meis1 D 9 0.6923 0.755 0.523 NA NA

homer_295_Tgif1 homer_295_Tgif1 R 8 0.6667 0.720 0.480 NA NA

homer_217_PBX1 homer_217_PBX1 D 9 0.6000 0.735 0.441 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GAAGACTGwsAs

MEIS3 MA0775.2 R 7 0.5833 0.745 0.435 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 2
(ENST00000456174.6)
Mean nb of predicted sites per peak: 2.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=3.52; evalue=0.0003

ymAGCTACrm

KYGTAGCTKR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymAGCTACrm

RFX5_known7 RFX5_known7 D 9 0.5625 0.717 0.403 NA NA

HLF_1 HLF_1 D 7 0.5385 0.744 0.401 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymAGCTACrm

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymAGCTACrm

DMRTA2 MA1478.2 D 6 0.6000 0.812 0.487 NA NA

OSR1 MA1542.2 D 7 0.6364 0.706 0.449 NA NA

BHLHE22 MA1635.2 D 6 0.6000 0.706 0.424 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 2
(ENST00000456174.6)
Mean nb of predicted sites per peak: 2.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_test_vs_ctrl_m7

k-mer sig=3.52; evalue=0.0003

CCATCTCACCTTTAGAC

GTCTAAAGGTGAGATGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CCATCTCACCTTTAGAC

NR4A_known4 NR4A_known4 R 11 0.6471 0.783 0.507 NA NA

RARG_1 RARG_1 R 14 0.7000 0.718 0.503 NA NA

RARG_4 RARG_4 R 13 0.6500 0.713 0.464 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CCATCTCACCTTTAGAC

homer_282_Tbet homer_282_Tbet R 10 0.5882 0.710 0.418 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CCATCTCACCTTTAGAC

HNF4A MA1494.2 R 12 0.6316 0.759 0.479 NA NA

TBX20 MA0689.1 R 11 0.6471 0.711 0.460 NA NA

Rarg MA0859.2 R 12 0.6000 0.759 0.455 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 1
(ENST00000456174.6)
Mean nb of predicted sites per peak: 1.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_test_vs_ctrl_m8

k-mer sig=3.52; evalue=0.0003

TwkyCTCAAGmw

WKCTTGAGRMWA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TwkyCTCAAGmw

NKX2-1_2 NKX2-1_2 D 10 0.7143 0.737 0.527 NA NA

NKX2-1_1 NKX2-1_1 D 9 0.6923 0.759 0.525 NA NA

NKX2-5_1 NKX2-5_1 D 7 0.5833 0.738 0.430 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TwkyCTCAAGmw

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TwkyCTCAAGmw

ZBTB6 MA1581.2 R 9 0.7500 0.767 0.575 NA NA

TFAP2C MA0814.3 R 9 0.7500 0.701 0.526 NA NA

RUNX3 MA0684.3 D 8 0.6667 0.711 0.474 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 2
(ENST00000456174.6)
Mean nb of predicted sites per peak: 2.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_test_vs_ctrl_m9

k-mer sig=3.52; evalue=0.0003

rmwwTGTGGATky

RMATCCACAWWKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmwwTGTGGATky

RUNX1_9 RUNX1_9 D 11 0.8462 0.718 0.607 NA NA

RUNX2_3 RUNX2_3 R 8 0.6154 0.756 0.466 NA NA

RUNX2_2 RUNX2_2 D 8 0.6154 0.741 0.456 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmwwTGTGGATky

homer_91_Foxh1 homer_91_Foxh1 D 11 0.7857 0.856 0.673 NA NA

homer_249_RUNX2 homer_249_RUNX2 R 12 0.9231 0.717 0.662 NA NA

homer_248_RUNX1 homer_248_RUNX1 R 10 0.7692 0.769 0.592 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmwwTGTGGATky

FOXH1 MA0479.2 R 8 0.6154 0.927 0.570 NA NA

Bcl11B MA1989.2 R 9 0.6923 0.782 0.542 NA NA

Runx1 MA0002.3 D 9 0.6923 0.763 0.529 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 2
(ENST00000456174.6)
Mean nb of predicted sites per peak: 2.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_test_vs_ctrl_m10

k-mer sig=0.28; evalue=0.52

GGACAGACCT

AGGTCTGTCC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GGACAGACCT

SMAD3_1 SMAD3_1 R 9 0.9000 0.717 0.645 NA NA

NR3C1_known5 NR3C1_known5 R 7 0.6364 0.804 0.512 NA NA

RAR_1 RAR_1 R 7 0.5833 0.787 0.459 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GGACAGACCT

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GGACAGACCT

Hand1 MA2123.1 D 9 0.9000 0.754 0.679 NA NA

SMAD2 MA1964.2 D 6 0.6000 0.778 0.467 NA NA

Nr1H2 MA1996.2 R 6 0.6000 0.775 0.465 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 0 (0.00%)
Max nb of predicted sites per peak:
Mean nb of predicted sites per peak: 0.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_test_vs_ctrl_m1

k-mer sig=4.65; evalue=2.2e-05

GTGAATCCACAAAGC

GCTTTGTGGATTCAC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GTGAATCCACAAAGC

RUNX1_9 RUNX1_9 R 11 0.7333 0.716 0.525 NA NA

RUNX3_4 RUNX3_4 D 10 0.6667 0.728 0.485 NA NA

RUNX2_3 RUNX2_3 D 8 0.5333 0.781 0.416 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GTGAATCCACAAAGC

homer_91_Foxh1 homer_91_Foxh1 R 12 0.8000 0.795 0.636 NA NA

homer_248_RUNX1 homer_248_RUNX1 D 10 0.6667 0.760 0.506 NA NA

homer_247_RUNX homer_247_RUNX D 10 0.6667 0.700 0.467 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GTGAATCCACAAAGC

FOXH1 MA0479.2 D 8 0.5333 0.980 0.522 NA NA

Bcl11B MA1989.2 D 9 0.6000 0.811 0.486 NA NA

Runx1 MA0002.3 R 9 0.6000 0.768 0.461 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 1
(ENST00000456174.6)
Mean nb of predicted sites per peak: 1.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_test_vs_ctrl_m2

k-mer sig=4.65; evalue=2.2e-05

rrGAAGACTGws

SWCAGTCTTCYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGAAGACTGws

SMAD_1 SMAD_1 D 8 0.6154 0.747 0.460 NA NA

SPI1_known2 SPI1_known2 D 7 0.5833 0.742 0.433 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGAAGACTGws

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGAAGACTGws

ZNF680 MA1729.2 D 9 0.6429 0.829 0.533 NA NA

IKZF2 MA2326.1 D 6 0.5000 0.882 0.441 NA NA

Elf5 MA0136.4 D 7 0.5385 0.748 0.403 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 2
(ENST00000456174.6)
Mean nb of predicted sites per peak: 2.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_test_vs_ctrl_m3

k-mer sig=4.65; evalue=2.2e-05

CTwGAGAAAAwy

RWTTTTCTCWAG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CTwGAGAAAAwy

ALX4_1 ALX4_1 D 12 0.9231 0.709 0.654 NA NA

GATA_known22 GATA_known22 D 8 0.6667 0.715 0.477 NA NA

HMGA1_1 HMGA1_1 D 7 0.5833 0.786 0.459 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CTwGAGAAAAwy

homer_279_STAT6 homer_279_STAT6 R 10 0.7143 0.702 0.502 NA NA

homer_278_STAT6 homer_278_STAT6 D 8 0.5714 0.737 0.421 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CTwGAGAAAAwy

Stat6 MA0520.2 D 8 0.5714 0.850 0.485 NA NA

ZNF384 MA1125.2 D 8 0.6667 0.715 0.477 NA NA

PRDM1 MA0508.4 R 7 0.5833 0.805 0.470 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 2
(ENST00000456174.6)
Mean nb of predicted sites per peak: 2.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_test_vs_ctrl_m4

k-mer sig=4.65; evalue=2.2e-05

kAACTTCTGmC

GKCAGAAGTTM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kAACTTCTGmC

NR2C2_disc2 NR2C2_disc2 D 9 0.7500 0.749 0.562 NA NA

RARA_5 RARA_5 R 11 0.7333 0.718 0.526 NA NA

RARA_10 RARA_10 R 11 0.7333 0.701 0.514 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kAACTTCTGmC

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kAACTTCTGmC

Ptf1A MA1618.2 R 9 0.8182 0.713 0.584 NA NA

OSR2 MA1646.2 R 8 0.7273 0.777 0.565 NA NA

Rarg MA0859.2 R 11 0.7333 0.715 0.524 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 2
(ENST00000456174.6)
Mean nb of predicted sites per peak: 2.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_test_vs_ctrl_m5

k-mer sig=4.65; evalue=2.2e-05

AGGCTTCCCCACCC

GGGTGGGGAAGCCT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AGGCTTCCCCACCC

FOXO3_6 FOXO3_6 D 11 0.7857 0.742 0.583 NA NA

FOXO1_5 FOXO1_5 D 11 0.7333 0.781 0.573 NA NA

FOXO4_5 FOXO4_5 D 11 0.7333 0.774 0.568 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AGGCTTCCCCACCC

homer_160_Maz homer_160_Maz R 8 0.5714 0.866 0.495 NA NA

homer_148_KLF5 homer_148_KLF5 R 9 0.6000 0.775 0.465 NA NA

homer_147_Klf4 homer_147_Klf4 D 9 0.6000 0.743 0.446 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AGGCTTCCCCACCC

ZNF75D MA1601.2 R 12 0.8571 0.844 0.724 NA NA

KLF4 MA0039.5 D 8 0.5714 0.995 0.569 NA NA

KLF1 MA0493.3 R 8 0.5714 0.918 0.524 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 1
(ENST00000456174.6)
Mean nb of predicted sites per peak: 1.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_test_vs_ctrl_m6

k-mer sig=0.81; evalue=0.15

GGAAGGGGTGGGG

CCCCACCCCTTCC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GGAAGGGGTGGGG

CCNT2_disc2 CCNT2_disc2 R 10 0.7692 0.895 0.689 NA NA

HF1H3B_1 HF1H3B_1 D 13 0.9286 0.737 0.684 NA NA

SP2_disc3 SP2_disc3 D 10 0.7692 0.855 0.658 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GGAAGGGGTGGGG

homer_146_KLF3 homer_146_KLF3 R 12 0.7500 0.768 0.576 NA NA

homer_148_KLF5 homer_148_KLF5 D 9 0.6429 0.830 0.534 NA NA

homer_160_Maz homer_160_Maz D 8 0.6154 0.866 0.533 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GGAAGGGGTGGGG

KLF4 MA0039.5 R 8 0.6154 0.995 0.612 NA NA

KLF10 MA1511.2 D 9 0.6923 0.873 0.604 NA NA

SP1 MA0079.5 D 9 0.6923 0.852 0.590 NA NA

Total matches= 21 (18 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 1
(ENST00000456174.6)
Mean nb of predicted sites per peak: 1.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_7nt_test_vs_ctrl_m7

k-mer sig=0.81; evalue=0.15

AGACCTAAGGAC

GTCCTTAGGTCT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AGACCTAAGGAC

HNF4_disc3 HNF4_disc3 D 9 0.7500 0.701 0.525 NA NA

TCF7L1_2 TCF7L1_2 D 10 0.7143 0.704 0.503 NA NA

RXRA_disc1 RXRA_disc1 D 8 0.5714 0.711 0.407 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AGACCTAAGGAC

homer_300_THRb homer_300_THRb D 7 0.5385 0.745 0.401 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AGACCTAAGGAC

TCF7L1 MA1421.1 D 10 0.7143 0.704 0.503 NA NA

HOXA4 MA1496.2 R 7 0.5833 0.711 0.415 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 1
(ENST00000456174.6)
Mean nb of predicted sites per peak: 1.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_7nt_test_vs_ctrl_m8

k-mer sig=0.81; evalue=0.15

TTTCTCwAGCyw

WRGCTWGAGAAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TTTCTCwAGCyw

TRIM28_disc2 TRIM28_disc2 R 7 0.5000 0.916 0.458 NA NA

NR2E3_1 NR2E3_1 D 7 0.5833 0.766 0.447 NA NA

GATA_known11 GATA_known11 R 7 0.5833 0.739 0.431 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TTTCTCwAGCyw

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TTTCTCwAGCyw

PRDM1 MA0508.4 D 6 0.4615 0.999 0.461 NA NA

Nr2e3 MA0164.2 D 6 0.5000 0.812 0.406 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 2
(ENST00000456174.6)
Mean nb of predicted sites per peak: 2.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_7nt_test_vs_ctrl_m9

k-mer sig=0.81; evalue=0.15

TCCAGGCCCAC

GTGGGCCTGGA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TCCAGGCCCAC

SP8_1 SP8_1 D 11 0.9167 0.701 0.642 NA NA

PRDM4_1 PRDM4_1 D 11 0.8462 0.745 0.630 NA NA

CACD_2 CACD_2 D 8 0.7273 0.726 0.528 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TCCAGGCCCAC

homer_149_Klf9 homer_149_Klf9 D 11 0.9167 0.705 0.646 NA NA

homer_331_ZNF711 homer_331_ZNF711 R 8 0.7273 0.791 0.575 NA NA

homer_311_ZFX homer_311_ZFX R 8 0.7273 0.757 0.551 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TCCAGGCCCAC

SP3 MA0746.3 D 11 1.0000 0.716 0.716 NA NA

KLF11 MA1512.2 D 10 0.9091 0.781 0.710 NA NA

SP9 MA1564.2 D 10 0.9091 0.754 0.685 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 1
(ENST00000456174.6)
Mean nb of predicted sites per peak: 1.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 oligos_7nt_test_vs_ctrl_m10

k-mer sig=0.81; evalue=0.15

ACAAAGCACGTT

AACGTGCTTTGT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ACAAAGCACGTT

MYC_disc6 MYC_disc6 D 9 0.7500 0.751 0.563 NA NA

REST_disc10 REST_disc10 R 9 0.7500 0.735 0.551 NA NA

HNF4_disc5 HNF4_disc5 D 9 0.7500 0.727 0.546 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ACAAAGCACGTT

homer_122_TACGTGCV homer_122_TACGTGCV R 8 0.6667 0.750 0.500 NA NA

homer_123_RTACGTGC homer_123_RTACGTGC R 7 0.5385 0.869 0.468 NA NA

homer_262_Sox3 homer_262_Sox3 R 7 0.5385 0.795 0.428 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ACAAAGCACGTT

SOX10 MA0442.3 D 6 0.5000 1.000 0.500 NA NA

HIF1A MA1106.2 R 6 0.5000 0.995 0.498 NA NA

Dmrt1 MA1603.2 D 8 0.6154 0.779 0.479 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1 (100.00%)
Max nb of predicted sites per peak: 1
(ENST00000456174.6)
Mean nb of predicted sites per peak: 1.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus ENCODE database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]
Motifs versus Homer database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: pr1079_vs_pr1077 (12/07/2025 21:15)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scWTYCACAwtkyWsy

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wGAGAAAAwyG

homer_238_Rbpj1 homer_238_Rbpj1 R 8 0.6154 0.716 0.441 NA NA

Total matches= 1

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TTTAGACCTAAG

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sswGGGGAAGmCTk

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GAAGACTGwsAs

MEIS3 MA0775.2 R 7 0.5833 0.745 0.435 NA NA

Total matches= 1

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymAGCTACrm

RFX5_known7 RFX5_known7 D 9 0.5625 0.717 0.403 NA NA

HLF_1 HLF_1 D 7 0.5385 0.744 0.401 NA NA

Total matches= 2

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymAGCTACrm

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CCATCTCACCTTTAGAC

homer_282_Tbet homer_282_Tbet R 10 0.5882 0.710 0.418 NA NA

Total matches= 1

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TwkyCTCAAGmw

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GGACAGACCT

Total matches= 0

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGAAGACTGws

SMAD_1 SMAD_1 D 8 0.6154 0.747 0.460 NA NA

SPI1_known2 SPI1_known2 D 7 0.5833 0.742 0.433 NA NA

Total matches= 2

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGAAGACTGws

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CTwGAGAAAAwy

homer_279_STAT6 homer_279_STAT6 R 10 0.7143 0.702 0.502 NA NA

homer_278_STAT6 homer_278_STAT6 D 8 0.5714 0.737 0.421 NA NA

Total matches= 2

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kAACTTCTGmC

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AGACCTAAGGAC

homer_300_THRb homer_300_THRb D 7 0.5385 0.745 0.401 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AGACCTAAGGAC

TCF7L1 MA1421.1 D 10 0.7143 0.704 0.503 NA NA

HOXA4 MA1496.2 R 7 0.5833 0.711 0.415 NA NA

Total matches= 2

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TTTCTCwAGCyw

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TTTCTCwAGCyw

PRDM1 MA0508.4 D 6 0.4615 0.999 0.461 NA NA

Nr2e3 MA0164.2 D 6 0.5000 0.812 0.406 NA NA

Total matches= 2

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TCCAGGCCCAC

SP8_1 SP8_1 D 11 0.9167 0.701 0.642 NA NA

PRDM4_1 PRDM4_1 D 11 0.8462 0.745 0.630 NA NA

CACD_2 CACD_2 D 8 0.7273 0.726 0.528 NA NA

Total matches= 15 (12 more)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: pr1079_vs_pr1077 (12/07/2025 21:15)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

ENCODE name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor scWTYCACAwtkyWsy Total matches= 0

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wGAGAAAAwyG homer_238_Rbpj1 homer_238_Rbpj1 R 8 0.6154 0.716 0.441 NA NA Total matches= 1

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor TTTAGACCTAAG Total matches= 0

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor sswGGGGAAGmCTk Total matches= 0

ENCODE name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor GAAGACTGwsAs SMAD3_1 SMAD3_1 R 9 0.7500 0.700 0.525 NA NA MEIS2_3 MEIS2_3 R 7 0.5833 0.747 0.436 NA NA MEIS3_4 MEIS3_4 R 7 0.5833 0.745 0.434 NA NA Total matches= 5 (2 more)

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor GAAGACTGwsAs MEIS3 MA0775.2 R 7 0.5833 0.745 0.435 NA NA Total matches= 1

ENCODE name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ymAGCTACrm RFX5_known7 RFX5_known7 D 9 0.5625 0.717 0.403 NA NA HLF_1 HLF_1 D 7 0.5385 0.744 0.401 NA NA Total matches= 2

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ymAGCTACrm Total matches= 0

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor CCATCTCACCTTTAGAC homer_282_Tbet homer_282_Tbet R 10 0.5882 0.710 0.418 NA NA Total matches= 1

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor TwkyCTCAAGmw Total matches= 0

ENCODE name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rmwwTGTGGATky RUNX1_9 RUNX1_9 D 11 0.8462 0.718 0.607 NA NA RUNX2_3 RUNX2_3 R 8 0.6154 0.756 0.466 NA NA RUNX2_2 RUNX2_2 D 8 0.6154 0.741 0.456 NA NA Total matches= 5 (2 more)

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor GGACAGACCT Total matches= 0

ENCODE name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rrGAAGACTGws SMAD_1 SMAD_1 D 8 0.6154 0.747 0.460 NA NA SPI1_known2 SPI1_known2 D 7 0.5833 0.742 0.433 NA NA Total matches= 2

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rrGAAGACTGws Total matches= 0

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor CTwGAGAAAAwy homer_279_STAT6 homer_279_STAT6 R 10 0.7143 0.702 0.502 NA NA homer_278_STAT6 homer_278_STAT6 D 8 0.5714 0.737 0.421 NA NA Total matches= 2

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor kAACTTCTGmC Total matches= 0

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor AGACCTAAGGAC homer_300_THRb homer_300_THRb D 7 0.5385 0.745 0.401 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor AGACCTAAGGAC TCF7L1 MA1421.1 D 10 0.7143 0.704 0.503 NA NA HOXA4 MA1496.2 R 7 0.5833 0.711 0.415 NA NA Total matches= 2

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor TTTCTCwAGCyw Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor TTTCTCwAGCyw PRDM1 MA0508.4 D 6 0.4615 0.999 0.461 NA NA Nr2e3 MA0164.2 D 6 0.5000 0.812 0.406 NA NA Total matches= 2

ENCODE name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor TCCAGGCCCAC SP8_1 SP8_1 D 11 0.9167 0.701 0.642 NA NA PRDM4_1 PRDM4_1 D 11 0.8462 0.745 0.630 NA NA CACD_2 CACD_2 D 8 0.7273 0.726 0.528 NA NA Total matches= 15 (12 more)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scWTYCACAwtkyWsy

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wGAGAAAAwyG

homer_238_Rbpj1 homer_238_Rbpj1 R 8 0.6154 0.716 0.441 NA NA

Total matches= 1

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TTTAGACCTAAG

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sswGGGGAAGmCTk

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GAAGACTGwsAs

MEIS3 MA0775.2 R 7 0.5833 0.745 0.435 NA NA

Total matches= 1

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymAGCTACrm

RFX5_known7 RFX5_known7 D 9 0.5625 0.717 0.403 NA NA

HLF_1 HLF_1 D 7 0.5385 0.744 0.401 NA NA

Total matches= 2

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymAGCTACrm

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CCATCTCACCTTTAGAC

homer_282_Tbet homer_282_Tbet R 10 0.5882 0.710 0.418 NA NA

Total matches= 1

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TwkyCTCAAGmw

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GGACAGACCT

Total matches= 0

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGAAGACTGws

SMAD_1 SMAD_1 D 8 0.6154 0.747 0.460 NA NA

SPI1_known2 SPI1_known2 D 7 0.5833 0.742 0.433 NA NA

Total matches= 2

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGAAGACTGws

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CTwGAGAAAAwy

homer_279_STAT6 homer_279_STAT6 R 10 0.7143 0.702 0.502 NA NA

homer_278_STAT6 homer_278_STAT6 D 8 0.5714 0.737 0.421 NA NA

Total matches= 2

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kAACTTCTGmC

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AGACCTAAGGAC

homer_300_THRb homer_300_THRb D 7 0.5385 0.745 0.401 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AGACCTAAGGAC

TCF7L1 MA1421.1 D 10 0.7143 0.704 0.503 NA NA

HOXA4 MA1496.2 R 7 0.5833 0.711 0.415 NA NA

Total matches= 2

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TTTCTCwAGCyw

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor TTTCTCwAGCyw

PRDM1 MA0508.4 D 6 0.4615 0.999 0.461 NA NA

Nr2e3 MA0164.2 D 6 0.5000 0.812 0.406 NA NA

Total matches= 2