RSAT - peak-motifs result

Analysis: YfjB (16/07/2025 10:13)

peak-motifs  -v 1 -title YfjB -i $RSAT/public_html/tmp/www-data/2025/07/16/peak-motifs.2025-07-16.101253_2025-07-16.101253_QHn925/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/07/16/peak-motifs.2025-07-16.101253_2025-07-16.101253_QHn925

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: atcgccagac (sig=7.97; e-value=1.1e-08) RC: gtctggcgat oligos_6nt_mkv2_m2 assembly: ttccagcaataaa (sig=3.70; e-value=0.0002) RC: tttattgctggaa oligos_6nt_mkv2_m3 assembly: gcctgaa (sig=3.32; e-value=0.00048) RC: ttcaggc oligos_6nt_mkv2_m4 assembly: gacaaaa (sig=3.01; e-value=0.00098) RC: ttttgtc oligos_6nt_mkv2_m5 assembly: atctcttcccc (sig=2.43; e-value=0.0037) RC: ggggaagagat	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: atcgccagc (sig=3.25; e-value=0.00056) RC: gctggcgat oligos_7nt_mkv2_m2 assembly: cttcttc (sig=2.52; e-value=0.003) RC: gaagaag oligos_7nt_mkv2_m3 assembly: agcaata (sig=1.63; e-value=0.023) RC: tattgct oligos_7nt_mkv2_m4 assembly: tcagcaac (sig=1.58; e-value=0.026) RC: gttgctga oligos_7nt_mkv2_m5 assembly: atcaggc (sig=1.54; e-value=0.029) RC: gcctgat	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=7.97; evalue=1.1e-08 hyatCGCCAGmsvv BBSKCTGGCGATRD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 44 (28.21%) Max nb of predicted sites per peak: 3  (ASM584v2_4415676_4417287) Mean nb of predicted sites per peak: 1.32	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=3.70; evalue=0.0002 wytTCCAGCAAtaAawy RWTTTATTGCTGGAARW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 37 (23.72%) Max nb of predicted sites per peak: 4  (ASM584v2_2817277_2818887) Mean nb of predicted sites per peak: 1.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=3.32; evalue=0.00048 mkGCCTGAagv BCTTCAGGCMK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 59 (37.82%) Max nb of predicted sites per peak: 5  (ASM584v2_4440342_4441648) Mean nb of predicted sites per peak: 1.49	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=3.01; evalue=0.00098 shGACAAAAks SMTTTTGTCDS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (17.31%) Max nb of predicted sites per peak: 2  (ASM584v2_4504075_4504899) Mean nb of predicted sites per peak: 1.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=2.43; evalue=0.0037 yyatCTCTTCCcssb VSSGGGAAGAGATRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 39 (25.00%) Max nb of predicted sites per peak: 4  (ASM584v2_2817277_2818887) Mean nb of predicted sites per peak: 1.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=3.25; evalue=0.00056 yyatCGCCAGCrv BYGCTGGCGATRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 57 (36.54%) Max nb of predicted sites per peak: 3  (ASM584v2_111339_111725) Mean nb of predicted sites per peak: 1.19	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=2.52; evalue=0.003 mtCTTCTTCmb VKGAAGAAGAK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (16.03%) Max nb of predicted sites per peak: 3  (ASM584v2_223243_224512) Mean nb of predicted sites per peak: 1.32	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=1.63; evalue=0.023 tcAGCAATAhm KDTATTGCTGA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (17.31%) Max nb of predicted sites per peak: 2  (ASM584v2_3705806_3706201) Mean nb of predicted sites per peak: 1.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=1.58; evalue=0.026 ykTCAGCAACar YTGTTGCTGAMR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 41 (26.28%) Max nb of predicted sites per peak: 3  (ASM584v2_4533850_4534868) Mean nb of predicted sites per peak: 1.27	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=1.54; evalue=0.029 kyATCAGGCvk MBGCCTGATRM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 47 (30.13%) Max nb of predicted sites per peak: 4  (ASM584v2_111339_111725) Mean nb of predicted sites per peak: 2.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title YfjB -i $RSAT/public_html/tmp/www-data/2025/07/16/peak-motifs.2025-07-16.101253_2025-07-16.101253_QHn925/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/07/16/peak-motifs.2025-07-16.101253_2025-07-16.101253_QHn925

Warning: Not a single pattern was found in file tmp/www-data/2025/07/16/peak-motifs.2025-07-16.101253_2025-07-16.101253_QHn925/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/07/16/peak-motifs.2025-07-16.101253_2025-07-16.101253_QHn925/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab